Strain Fitness in Pantoea sp. MT58 around IAI47_17705

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
3,758,718	-		IAI47_17700	0.57	-3.6
3,758,784	+		IAI47_17700	0.64	-2.5
3,758,784	+		IAI47_17700	0.64	-2.8
3,758,784	+		IAI47_17700	0.64	-2.0
3,758,784	+		IAI47_17700	0.64	-4.2
3,758,784	+		IAI47_17700	0.64	-3.2
3,758,785	-		IAI47_17700	0.64	-2.0
3,758,785	-		IAI47_17700	0.64	-2.2
3,758,785	-		IAI47_17700	0.64	-1.2
3,758,787	+		IAI47_17700	0.64	-1.2
3,758,787	+		IAI47_17700	0.64	-1.2
3,758,787	+		IAI47_17700	0.64	-0.7
3,758,788	-		IAI47_17700	0.65	-1.7
3,758,788	-		IAI47_17700	0.65	-1.7
3,758,788	-		IAI47_17700	0.65	-2.7
3,758,847	-		IAI47_17700	0.71	-1.0
3,758,906	-		IAI47_17700	0.78	-2.8
3,758,906	-		IAI47_17700	0.78	-3.8
3,758,906	-		IAI47_17700	0.78	-0.7
3,758,906	-		IAI47_17700	0.78	-1.7
3,759,003	-		IAI47_17700	0.88	-3.1
3,759,014	+		IAI47_17700	0.89	-2.8
3,759,156	+				-1.2
3,759,247	+				+0.4
3,759,247	+				+4.6
3,759,247	+				+0.7
3,759,247	+				-0.1
3,759,248	-				+0.5
3,759,248	-				+2.2
3,759,248	-				-0.0
3,759,248	-				+1.8
3,759,248	-				+0.6
3,759,274	+				+0.1
3,759,274	+				-0.5
3,759,274	+				+0.3
3,759,275	-				+1.0
3,759,275	-				+0.4
3,759,321	-				+0.7
3,759,380	+				-1.5
3,759,381	-				-1.4
3,759,381	-				+1.3
3,759,381	-				+1.3
3,759,381	-				+0.3
3,759,408	+				+2.0
3,759,408	+				-1.7
3,759,409	-				+1.0
3,759,409	-				+0.3
3,759,409	-				+0.1
3,759,418	+				+1.4
3,759,418	+				+0.1
3,759,418	+				-0.1
3,759,419	-				+0.8
3,759,419	-				+1.2
3,759,430	+				+0.6
3,759,482	+				-1.7
3,759,483	-				-0.4
3,759,483	-				-0.4
3,759,494	+				-0.4
3,759,495	-				+0.1
3,759,518	+				+0.5
3,759,518	+				-0.4
3,759,519	-				+0.8
3,759,519	-				+0.2
3,759,527	+				+0.5
3,759,527	+				-0.1
3,759,527	+				-0.2
3,759,528	-				-0.2
3,759,528	-				+0.3
3,759,528	-				-0.5
3,759,528	-				-1.0
3,759,528	-				-0.4
3,759,528	-				+0.4
3,759,547	-				+0.2
3,759,564	+				+0.3
3,759,614	-				+0.8
3,759,624	+				-0.5
3,759,624	+				+0.9
3,759,624	+				-0.2
3,759,625	-				+0.1
3,759,625	-				+0.9
3,759,628	+				-0.5
3,759,628	+				+1.6
3,759,628	+				-0.5
3,759,629	-				-1.2
3,759,629	-				-0.5
3,759,629	-				+0.3
3,759,668	+				-2.0
3,759,669	-				-0.9
3,759,684	+				+0.3
3,759,685	-				+0.5
3,759,685	-				+0.1
3,759,685	-				+0.3
3,759,685	-				-0.7
3,759,685	-				-0.5
3,759,692	-				+1.3
3,759,692	-				+0.5
3,759,693	+				+1.3
3,759,693	+				-0.8
3,759,693	+				-0.4
3,759,693	+				-0.1
3,759,693	+				+0.5
3,759,694	-				+0.1
3,759,694	-				+0.7
3,759,694	-				-2.0
3,759,694	-				+0.3
3,759,717	+				-0.4
3,759,717	+				-0.2
3,759,717	+				+0.9
3,759,717	+				+0.3
3,759,717	+				+0.4
3,759,717	+				-0.1
3,759,717	+				+0.6
3,759,717	+				+1.6
3,759,717	-				+0.3
3,759,718	-				-1.2
3,759,718	-				+0.7
3,759,718	-				-0.7
3,759,718	-				-0.0
3,759,718	-				-0.5
3,759,718	-				-1.8
3,759,718	-				+0.3
3,759,718	-				-0.7
3,759,718	-				-0.5
3,759,718	-				+1.9
3,759,718	-				+1.0
3,759,719	+				+3.1
3,759,719	+				-0.5
3,759,720	-				-0.4
3,759,720	-				-0.7
3,759,720	-				-0.7
3,759,720	-				+0.1
3,759,720	-				-1.2
3,759,720	-				+0.3
3,759,720	-				+1.6
3,759,720	-				+0.1
3,759,720	-				-0.7
3,759,720	-				-0.3
3,759,720	-				-1.5
3,759,720	-				-0.7
3,759,770	+		IAI47_17705	0.23	-0.1
3,759,801	-		IAI47_17705	0.31	-2.8
3,759,801	-		IAI47_17705	0.31	-0.1
3,759,801	-		IAI47_17705	0.31	+0.5
3,759,840	-		IAI47_17705	0.42	-0.7
3,759,891	-		IAI47_17705	0.55	-0.1
3,759,891	-		IAI47_17705	0.55	-1.0
3,759,931	+		IAI47_17705	0.66	+2.3
3,759,931	+		IAI47_17705	0.66	-0.2
3,759,932	-		IAI47_17705	0.66	-2.1
3,759,933	+		IAI47_17705	0.67	-0.7
3,759,933	+		IAI47_17705	0.67	+0.6
3,759,933	+		IAI47_17705	0.67	-1.3
3,759,933	+		IAI47_17705	0.67	-0.8
3,759,934	-		IAI47_17705	0.67	-1.7
3,759,934	-		IAI47_17705	0.67	+0.2
3,759,934	-		IAI47_17705	0.67	+0.1
3,759,934	-		IAI47_17705	0.67	+0.5
3,759,934	-		IAI47_17705	0.67	+1.0
3,759,950	+		IAI47_17705	0.71	+0.8
3,759,950	+		IAI47_17705	0.71	+0.3
3,759,951	-		IAI47_17705	0.71	-0.1
3,759,951	-		IAI47_17705	0.71	-0.9
3,759,951	-		IAI47_17705	0.71	+1.0
3,759,951	-		IAI47_17705	0.71	-1.2
3,759,951	-		IAI47_17705	0.71	-0.4
3,759,951	-		IAI47_17705	0.71	+0.6
3,759,951	-		IAI47_17705	0.71	+0.0
3,759,951	-		IAI47_17705	0.71	-1.2
3,759,959	+		IAI47_17705	0.74	-1.5
3,759,959	+		IAI47_17705	0.74	+0.7
3,760,047	-				+1.1
3,760,061	+				+0.7
3,760,072	+				-0.4
3,760,073	-				+0.8
3,760,115	+				+0.3
3,760,115	+				+0.6
3,760,115	+				+0.1
3,760,115	+				-0.7
3,760,115	+				+0.8
3,760,115	+				-0.8
3,760,115	+				+0.3
3,760,116	-				+0.7
3,760,116	-				+2.1
3,760,116	-				-0.4
3,760,116	-				-0.9
3,760,116	-				+2.3
3,760,116	-				+0.3
3,760,116	-				-1.7
3,760,116	-				-0.1
3,760,116	-				+0.0
3,760,116	-				+1.0
3,760,116	-				+2.3
3,760,119	+				-0.7
3,760,119	+				+1.9
3,760,119	+				+0.3
3,760,119	+				-0.4
3,760,119	+				-2.5
3,760,119	+				-0.8
3,760,119	+				-1.1
3,760,120	-				+1.3
3,760,120	-				+0.3
3,760,120	-				+0.1
3,760,120	-				+1.3
3,760,120	-				-0.2
3,760,120	-				+0.6
3,760,120	-				+1.1
3,760,120	-				+0.6
3,760,120	-				-2.5
3,760,120	-				+0.3
3,760,120	-				-0.1
3,760,120	-				+0.3
3,760,120	-				+0.2
3,760,120	-				-1.0
3,760,127	+				-1.4
3,760,127	+				-0.4
3,760,127	+				+1.7
3,760,127	+				-0.2
3,760,127	+				+0.0
3,760,127	+				+0.0
3,760,128	-				+0.3
3,760,128	-				-1.0
3,760,128	-				+0.5
3,760,128	-				-0.2
3,760,137	+				-0.7
3,760,137	+				+0.4
3,760,137	+				+1.5
3,760,137	+				-0.1
3,760,185	+				+1.8
3,760,185	+				+0.3
3,760,186	-				-0.4
3,760,186	-				-1.3
3,760,186	-				+0.6
3,760,186	-				-0.6
3,760,187	+				-0.4
3,760,187	+				-0.6
3,760,187	+				-0.4
3,760,188	-				-0.3
3,760,206	+				-1.2
3,760,207	+				+0.9
3,760,207	+				+2.4
3,760,207	+				-2.5
3,760,207	+				-1.7
3,760,208	-				-0.7
3,760,208	-				-0.1
3,760,216	+				-0.7
3,760,216	+				+1.8
3,760,216	+				+1.8
3,760,216	+				+1.7
3,760,217	-				-0.2
3,760,217	-				+1.3
3,760,222	-				-0.4
3,760,249	+				-0.7
3,760,249	+				+0.3
3,760,250	-				+0.8
3,760,250	-				-0.2
3,760,303	-				-0.7
3,760,337	+				-1.0
3,760,337	+				-0.1
3,760,337	+				-1.2
3,760,349	+				+0.3
3,760,349	+				+0.2
3,760,349	+				+0.2
3,760,350	-				+0.8
3,760,350	-				+1.3
3,760,350	-				-0.6
3,760,350	-				-3.0
3,760,350	-				-1.0
3,760,350	-				+1.1
3,760,382	+				+0.2
3,760,382	+				+0.1
3,760,383	-				-0.2
3,760,383	-				-0.1
3,760,383	-				-0.7
3,760,405	+				-0.7
3,760,405	+				-2.0
3,760,406	-				-0.7
3,760,406	-				-0.7
3,760,406	-				+1.8
3,760,407	+				-0.7
3,760,407	+				-1.1
3,760,407	+				-1.6
3,760,407	+				-0.9
3,760,407	+				-0.1
3,760,407	+				+0.0
3,760,407	+				+1.3
3,760,407	+				-0.6
3,760,407	+				-0.9
3,760,407	+				-1.0
3,760,407	+				-3.0
3,760,407	+				-1.8
3,760,407	+				-0.4
3,760,407	+				+1.3
3,760,407	+				-0.2
3,760,407	+				+0.7
3,760,407	+				-0.2
3,760,408	-				-1.2
3,760,408	-				+0.8
3,760,408	-				-1.2
3,760,408	-				+1.3
3,760,408	-				+0.3
3,760,408	-				+2.3
3,760,408	-				-0.1
3,760,408	-				-0.9
3,760,408	-				-0.5
3,760,408	-				-0.4
3,760,408	-				+2.0
3,760,408	-				-0.5
3,760,408	-				+0.0
3,760,408	-				+0.1
3,760,408	-				+0.2
3,760,408	-				+1.1
3,760,408	-				-0.8
3,760,408	-				-0.9
3,760,408	-				+1.0
3,760,408	-				-1.0
3,760,408	-				-0.7
3,760,408	-				+0.2
3,760,408	-				+1.1
3,760,437	-				+0.5
3,760,549	+				-2.7
3,760,550	-				+0.1
3,760,556	-				+0.1
3,760,556	-				+1.1
3,760,559	+				-0.9
3,760,559	+				+0.2
3,760,559	+				+0.3
3,760,559	+				+0.3
3,760,559	+				+1.3
3,760,560	-				+1.2
3,760,560	-				-1.1
3,760,561	+				-1.5
3,760,591	+				+0.8
3,760,591	+				-1.0
3,760,591	+				-1.2
3,760,592	-				-1.5
3,760,592	-				+0.2
3,760,592	-				+0.6
3,760,650	+				-0.6
3,760,650	+				+0.0
3,760,651	-				-0.1
3,760,651	-				-0.5
3,760,651	-				-1.7
3,760,651	-				-0.1
3,760,651	-				+0.3
3,760,651	-				+0.8
3,760,651	-				+1.1
3,760,683	+				+0.9
3,760,683	+				+0.3
3,760,683	+				-0.3
3,760,683	+				-0.7
3,760,684	-				-0.7
3,760,684	-				+0.2
3,760,684	-				-1.2
3,760,700	+				-0.4
3,760,700	+				+0.1
3,760,701	-				-1.0
3,760,701	-				-0.4
3,760,701	-				+1.7
3,760,701	-				-1.7
3,760,789	-				-0.7
3,760,789	-				-0.7
3,760,797	+		IAI47_17710	0.10	-0.4
3,760,797	+		IAI47_17710	0.10	+0.9
3,760,797	+		IAI47_17710	0.10	-0.7
3,760,797	+		IAI47_17710	0.10	+1.2
3,760,798	-		IAI47_17710	0.10	-2.0
3,760,848	+		IAI47_17710	0.14	+0.5
3,760,848	+		IAI47_17710	0.14	+1.1
3,760,849	-		IAI47_17710	0.14	+0.3
3,760,849	-		IAI47_17710	0.14	+0.6
3,760,849	-		IAI47_17710	0.14	-1.2
3,760,976	+		IAI47_17710	0.24	-2.5
3,760,976	+		IAI47_17710	0.24	-1.0
3,760,976	+		IAI47_17710	0.24	-1.7
3,760,977	-		IAI47_17710	0.24	+0.9
3,760,977	-		IAI47_17710	0.24	+2.4
3,760,990	-		IAI47_17710	0.25	-0.7
3,760,990	-		IAI47_17710	0.25	-1.2
3,760,990	-		IAI47_17710	0.25	+0.3
3,760,990	-		IAI47_17710	0.25	-0.1
3,760,990	-		IAI47_17710	0.25	-2.0
3,761,004	+		IAI47_17710	0.26	+1.3
3,761,005	-		IAI47_17710	0.26	+0.8
3,761,005	-		IAI47_17710	0.26	+0.9
3,761,012	+		IAI47_17710	0.27	+0.3
3,761,012	+		IAI47_17710	0.27	+1.3
3,761,013	-		IAI47_17710	0.27	+0.3
3,761,013	-		IAI47_17710	0.27	-0.4
3,761,013	-		IAI47_17710	0.27	-0.2
3,761,013	-		IAI47_17710	0.27	-2.7
3,761,013	-		IAI47_17710	0.27	+0.3
3,761,043	-		IAI47_17710	0.29	+0.3