Strain Fitness in Pantoea sp. MT58 around IAI47_17700

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
3,757,202	+		IAI47_17695	0.31	-1.7
3,757,202	+		IAI47_17695	0.31	-2.6
3,757,203	-		IAI47_17695	0.31	-3.2
3,757,203	-		IAI47_17695	0.31	-3.7
3,757,203	-		IAI47_17695	0.31	-3.5
3,757,212	+		IAI47_17695	0.32	-3.6
3,757,212	+		IAI47_17695	0.32	-2.0
3,757,212	+		IAI47_17695	0.32	-4.1
3,757,212	+		IAI47_17695	0.32	-3.2
3,757,212	+		IAI47_17695	0.32	-1.7
3,757,212	+		IAI47_17695	0.32	-3.9
3,757,212	+		IAI47_17695	0.32	-2.2
3,757,213	-		IAI47_17695	0.32	-4.1
3,757,228	-		IAI47_17695	0.33	-3.1
3,757,228	-		IAI47_17695	0.33	-2.6
3,757,228	-		IAI47_17695	0.33	-4.3
3,757,287	+		IAI47_17695	0.37	-2.0
3,757,287	+		IAI47_17695	0.37	-4.4
3,757,287	+		IAI47_17695	0.37	-3.0
3,757,288	-		IAI47_17695	0.37	-2.7
3,757,288	-		IAI47_17695	0.37	-3.7
3,757,288	-		IAI47_17695	0.37	-3.7
3,757,299	+		IAI47_17695	0.38	-3.7
3,757,299	+		IAI47_17695	0.38	-1.7
3,757,300	-		IAI47_17695	0.38	-2.0
3,757,300	-		IAI47_17695	0.38	-1.7
3,757,320	+		IAI47_17695	0.40	-1.7
3,757,344	+		IAI47_17695	0.41	-4.3
3,757,344	+		IAI47_17695	0.41	-3.5
3,757,344	+		IAI47_17695	0.41	-2.5
3,757,345	-		IAI47_17695	0.41	-3.1
3,757,345	-		IAI47_17695	0.41	-2.6
3,757,345	-		IAI47_17695	0.41	-4.8
3,757,355	+		IAI47_17695	0.42	-2.0
3,757,355	+		IAI47_17695	0.42	-1.5
3,757,355	+		IAI47_17695	0.42	-2.2
3,757,355	+		IAI47_17695	0.42	-2.0
3,757,356	-		IAI47_17695	0.42	-2.2
3,757,384	-		IAI47_17695	0.44	-4.0
3,757,384	-		IAI47_17695	0.44	-2.7
3,757,384	-		IAI47_17695	0.44	-3.1
3,757,404	+		IAI47_17695	0.45	-3.0
3,757,404	+		IAI47_17695	0.45	-1.7
3,757,405	-		IAI47_17695	0.45	-1.7
3,757,405	-		IAI47_17695	0.45	-0.7
3,757,444	+		IAI47_17695	0.48	-0.2
3,757,445	-		IAI47_17695	0.48	-0.7
3,757,480	+		IAI47_17695	0.51	-2.5
3,757,482	+		IAI47_17695	0.51	-0.7
3,757,482	+		IAI47_17695	0.51	-2.2
3,757,483	-		IAI47_17695	0.51	-2.7
3,757,535	+		IAI47_17695	0.54	-2.5
3,757,535	+		IAI47_17695	0.54	-1.7
3,757,535	+		IAI47_17695	0.54	-0.7
3,757,536	-		IAI47_17695	0.54	-0.1
3,757,536	-		IAI47_17695	0.54	-1.2
3,757,539	-		IAI47_17695	0.55	-0.7
3,757,539	-		IAI47_17695	0.55	-3.7
3,757,539	-		IAI47_17695	0.55	-3.4
3,757,562	+		IAI47_17695	0.56	-1.7
3,757,562	+		IAI47_17695	0.56	-4.0
3,757,563	-		IAI47_17695	0.56	-2.4
3,757,563	-		IAI47_17695	0.56	-2.5
3,757,600	+		IAI47_17695	0.59	-3.2
3,757,600	+		IAI47_17695	0.59	-2.0
3,757,601	-		IAI47_17695	0.59	-3.1
3,757,632	+		IAI47_17695	0.61	-3.0
3,757,633	-		IAI47_17695	0.61	+0.3
3,757,633	-		IAI47_17695	0.61	-2.0
3,757,635	-		IAI47_17695	0.61	-2.7
3,757,635	-		IAI47_17695	0.61	+0.3
3,757,635	-		IAI47_17695	0.61	-0.4
3,757,647	+		IAI47_17695	0.62	-0.7
3,757,648	-		IAI47_17695	0.62	-3.6
3,757,688	+		IAI47_17695	0.65	-2.7
3,757,689	-		IAI47_17695	0.65	-3.9
3,757,689	-		IAI47_17695	0.65	-3.1
3,757,689	-		IAI47_17695	0.65	-5.3
3,757,689	-		IAI47_17695	0.65	-3.1
3,757,734	+		IAI47_17695	0.68	-2.2
3,757,734	+		IAI47_17695	0.68	-2.0
3,757,735	-		IAI47_17695	0.68	-4.4
3,757,735	-		IAI47_17695	0.68	-1.5
3,757,818	+		IAI47_17695	0.74	-1.2
3,757,818	+		IAI47_17695	0.74	-3.7
3,757,818	+		IAI47_17695	0.74	-2.5
3,757,818	+		IAI47_17695	0.74	-3.0
3,757,819	-		IAI47_17695	0.74	-1.7
3,757,819	-		IAI47_17695	0.74	-3.4
3,757,819	-		IAI47_17695	0.74	-2.5
3,757,819	-		IAI47_17695	0.74	-0.7
3,757,819	-		IAI47_17695	0.74	-1.7
3,757,871	-		IAI47_17695	0.77	-3.1
3,757,903	-		IAI47_17695	0.80	-3.7
3,757,938	+		IAI47_17695	0.82	-2.0
3,757,939	-		IAI47_17695	0.82	-2.0
3,757,939	-		IAI47_17695	0.82	-3.1
3,757,939	-		IAI47_17695	0.82	-2.0
3,757,939	-		IAI47_17695	0.82	-2.8
3,758,011	+		IAI47_17695	0.87	-0.7
3,758,060	-				-2.0
3,758,060	-				-2.0
3,758,174	-				-1.7
3,758,174	-				-2.7
3,758,293	-		IAI47_17700	0.10	-1.7
3,758,369	+		IAI47_17700	0.19	-2.5
3,758,446	+		IAI47_17700	0.27	-1.2
3,758,446	+		IAI47_17700	0.27	+0.3
3,758,447	-		IAI47_17700	0.27	-5.3
3,758,447	-		IAI47_17700	0.27	-4.4
3,758,606	+		IAI47_17700	0.45	-3.7
3,758,606	+		IAI47_17700	0.45	-0.7
3,758,607	-		IAI47_17700	0.45	-2.0
3,758,612	+		IAI47_17700	0.45	-3.9
3,758,612	+		IAI47_17700	0.45	-2.8
3,758,612	+		IAI47_17700	0.45	+0.3
3,758,612	+		IAI47_17700	0.45	-1.2
3,758,612	+		IAI47_17700	0.45	-2.1
3,758,612	+		IAI47_17700	0.45	-3.8
3,758,612	+		IAI47_17700	0.45	-3.8
3,758,612	+		IAI47_17700	0.45	-0.7
3,758,613	-		IAI47_17700	0.45	-2.5
3,758,613	-		IAI47_17700	0.45	-4.3
3,758,648	-		IAI47_17700	0.49	-1.7
3,758,668	+		IAI47_17700	0.51	-2.5
3,758,668	+		IAI47_17700	0.51	-2.2
3,758,668	+		IAI47_17700	0.51	-2.5
3,758,668	+		IAI47_17700	0.51	-0.7
3,758,668	+		IAI47_17700	0.51	-3.0
3,758,668	+		IAI47_17700	0.51	-2.2
3,758,668	+		IAI47_17700	0.51	-3.7
3,758,668	+		IAI47_17700	0.51	-2.7
3,758,668	+		IAI47_17700	0.51	-3.0
3,758,668	+		IAI47_17700	0.51	-3.4
3,758,668	+		IAI47_17700	0.51	-1.7
3,758,668	+		IAI47_17700	0.51	-1.7
3,758,669	-		IAI47_17700	0.52	-2.0
3,758,669	-		IAI47_17700	0.52	-3.4
3,758,669	-		IAI47_17700	0.52	-3.0
3,758,669	-		IAI47_17700	0.52	-2.8
3,758,669	-		IAI47_17700	0.52	-2.5
3,758,669	-		IAI47_17700	0.52	-1.7
3,758,669	-		IAI47_17700	0.52	-3.6
3,758,718	-		IAI47_17700	0.57	-3.6
3,758,784	+		IAI47_17700	0.64	-2.5
3,758,784	+		IAI47_17700	0.64	-2.8
3,758,784	+		IAI47_17700	0.64	-2.0
3,758,784	+		IAI47_17700	0.64	-4.2
3,758,784	+		IAI47_17700	0.64	-3.2
3,758,785	-		IAI47_17700	0.64	-2.0
3,758,785	-		IAI47_17700	0.64	-2.2
3,758,785	-		IAI47_17700	0.64	-1.2
3,758,787	+		IAI47_17700	0.64	-1.2
3,758,787	+		IAI47_17700	0.64	-1.2
3,758,787	+		IAI47_17700	0.64	-0.7
3,758,788	-		IAI47_17700	0.65	-1.7
3,758,788	-		IAI47_17700	0.65	-1.7
3,758,788	-		IAI47_17700	0.65	-2.7
3,758,847	-		IAI47_17700	0.71	-1.0
3,758,906	-		IAI47_17700	0.78	-2.8
3,758,906	-		IAI47_17700	0.78	-3.8
3,758,906	-		IAI47_17700	0.78	-0.7
3,758,906	-		IAI47_17700	0.78	-1.7
3,759,003	-		IAI47_17700	0.88	-3.1
3,759,014	+		IAI47_17700	0.89	-2.8
3,759,156	+				-1.2
3,759,247	+				+0.4
3,759,247	+				+4.6
3,759,247	+				+0.7
3,759,247	+				-0.1
3,759,248	-				+0.5
3,759,248	-				+2.2
3,759,248	-				-0.0
3,759,248	-				+1.8
3,759,248	-				+0.6
3,759,274	+				+0.1
3,759,274	+				-0.5
3,759,274	+				+0.3
3,759,275	-				+1.0
3,759,275	-				+0.4
3,759,321	-				+0.7
3,759,380	+				-1.5
3,759,381	-				-1.4
3,759,381	-				+1.3
3,759,381	-				+1.3
3,759,381	-				+0.3
3,759,408	+				+2.0
3,759,408	+				-1.7
3,759,409	-				+1.0
3,759,409	-				+0.3
3,759,409	-				+0.1
3,759,418	+				+1.4
3,759,418	+				+0.1
3,759,418	+				-0.1
3,759,419	-				+0.8
3,759,419	-				+1.2
3,759,430	+				+0.6
3,759,482	+				-1.7
3,759,483	-				-0.4
3,759,483	-				-0.4
3,759,494	+				-0.4
3,759,495	-				+0.1
3,759,518	+				+0.5
3,759,518	+				-0.4
3,759,519	-				+0.8
3,759,519	-				+0.2
3,759,527	+				+0.5
3,759,527	+				-0.1
3,759,527	+				-0.2
3,759,528	-				-0.2
3,759,528	-				+0.3
3,759,528	-				-0.5
3,759,528	-				-1.0
3,759,528	-				-0.4
3,759,528	-				+0.4
3,759,547	-				+0.2
3,759,564	+				+0.3
3,759,614	-				+0.8
3,759,624	+				-0.5
3,759,624	+				+0.9
3,759,624	+				-0.2
3,759,625	-				+0.1
3,759,625	-				+0.9
3,759,628	+				-0.5
3,759,628	+				+1.6
3,759,628	+				-0.5
3,759,629	-				-1.2
3,759,629	-				-0.5
3,759,629	-				+0.3
3,759,668	+				-2.0
3,759,669	-				-0.9
3,759,684	+				+0.3
3,759,685	-				+0.5
3,759,685	-				+0.1
3,759,685	-				+0.3
3,759,685	-				-0.7
3,759,685	-				-0.5
3,759,692	-				+1.3
3,759,692	-				+0.5
3,759,693	+				+1.3
3,759,693	+				-0.8
3,759,693	+				-0.4
3,759,693	+				-0.1
3,759,693	+				+0.5
3,759,694	-				+0.1
3,759,694	-				+0.7
3,759,694	-				-2.0
3,759,694	-				+0.3
3,759,717	+				-0.4
3,759,717	+				-0.2
3,759,717	+				+0.9
3,759,717	+				+0.3
3,759,717	+				+0.4
3,759,717	+				-0.1
3,759,717	+				+0.6
3,759,717	+				+1.6
3,759,717	-				+0.3
3,759,718	-				-1.2
3,759,718	-				+0.7
3,759,718	-				-0.7
3,759,718	-				-0.0
3,759,718	-				-0.5
3,759,718	-				-1.8
3,759,718	-				+0.3
3,759,718	-				-0.7
3,759,718	-				-0.5
3,759,718	-				+1.9
3,759,718	-				+1.0
3,759,719	+				+3.1
3,759,719	+				-0.5
3,759,720	-				-0.4
3,759,720	-				-0.7
3,759,720	-				-0.7
3,759,720	-				+0.1
3,759,720	-				-1.2
3,759,720	-				+0.3
3,759,720	-				+1.6
3,759,720	-				+0.1
3,759,720	-				-0.7
3,759,720	-				-0.3
3,759,720	-				-1.5
3,759,720	-				-0.7
3,759,770	+		IAI47_17705	0.23	-0.1
3,759,801	-		IAI47_17705	0.31	-2.8
3,759,801	-		IAI47_17705	0.31	-0.1
3,759,801	-		IAI47_17705	0.31	+0.5
3,759,840	-		IAI47_17705	0.42	-0.7
3,759,891	-		IAI47_17705	0.55	-0.1
3,759,891	-		IAI47_17705	0.55	-1.0
3,759,931	+		IAI47_17705	0.66	+2.3
3,759,931	+		IAI47_17705	0.66	-0.2
3,759,932	-		IAI47_17705	0.66	-2.1
3,759,933	+		IAI47_17705	0.67	-0.7
3,759,933	+		IAI47_17705	0.67	+0.6
3,759,933	+		IAI47_17705	0.67	-1.3
3,759,933	+		IAI47_17705	0.67	-0.8
3,759,934	-		IAI47_17705	0.67	-1.7
3,759,934	-		IAI47_17705	0.67	+0.2
3,759,934	-		IAI47_17705	0.67	+0.1
3,759,934	-		IAI47_17705	0.67	+0.5
3,759,934	-		IAI47_17705	0.67	+1.0
3,759,950	+		IAI47_17705	0.71	+0.8
3,759,950	+		IAI47_17705	0.71	+0.3
3,759,951	-		IAI47_17705	0.71	-0.1
3,759,951	-		IAI47_17705	0.71	-0.9
3,759,951	-		IAI47_17705	0.71	+1.0
3,759,951	-		IAI47_17705	0.71	-1.2
3,759,951	-		IAI47_17705	0.71	-0.4
3,759,951	-		IAI47_17705	0.71	+0.6
3,759,951	-		IAI47_17705	0.71	+0.0
3,759,951	-		IAI47_17705	0.71	-1.2
3,759,959	+		IAI47_17705	0.74	-1.5
3,759,959	+		IAI47_17705	0.74	+0.7
3,760,047	-				+1.1
3,760,061	+				+0.7
3,760,072	+				-0.4
3,760,073	-				+0.8