Strain Fitness in Pantoea sp. MT58 around IAI47_16390

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
3,471,463	+		IAI47_16375	0.41	-1.1
3,471,463	+		IAI47_16375	0.41	+0.6
3,471,463	+		IAI47_16375	0.41	+0.9
3,471,463	+		IAI47_16375	0.41	+1.1
3,471,464	-		IAI47_16375	0.41	-0.1
3,471,464	-		IAI47_16375	0.41	+1.4
3,471,464	-		IAI47_16375	0.41	+1.2
3,471,464	-		IAI47_16375	0.41	+0.7
3,471,464	-		IAI47_16375	0.41	-0.6
3,471,464	-		IAI47_16375	0.41	+1.2
3,471,520	+		IAI47_16375	0.47	+0.6
3,471,520	+		IAI47_16375	0.47	+1.2
3,471,521	-		IAI47_16375	0.47	+1.9
3,471,613	-		IAI47_16375	0.56	+0.4
3,471,624	+		IAI47_16375	0.57	-0.3
3,471,624	+		IAI47_16375	0.57	+0.0
3,471,625	-		IAI47_16375	0.57	+0.8
3,471,625	-		IAI47_16375	0.57	+1.8
3,471,625	-		IAI47_16375	0.57	-0.1
3,471,625	-		IAI47_16375	0.57	+0.7
3,471,625	-		IAI47_16375	0.57	+0.9
3,471,642	+		IAI47_16375	0.59	+1.7
3,471,662	+		IAI47_16375	0.61	+0.2
3,471,662	+		IAI47_16375	0.61	-0.6
3,471,662	+		IAI47_16375	0.61	+0.8
3,471,662	+		IAI47_16375	0.61	+1.4
3,471,662	+		IAI47_16375	0.61	+0.0
3,471,663	-		IAI47_16375	0.61	+1.4
3,471,694	-				+1.8
3,471,698	+		IAI47_16375	0.64	+2.2
3,471,698	+		IAI47_16375	0.64	+0.9
3,471,698	+		IAI47_16375	0.64	+0.8
3,471,698	+		IAI47_16375	0.64	+2.4
3,471,698	+		IAI47_16375	0.64	+1.9
3,471,698	+		IAI47_16375	0.64	-0.2
3,471,699	-		IAI47_16375	0.64	+1.0
3,471,699	-		IAI47_16375	0.64	+1.8
3,471,831	+		IAI47_16375	0.77	+0.4
3,471,831	+		IAI47_16375	0.77	-0.6
3,471,831	+		IAI47_16375	0.77	+0.4
3,471,831	+		IAI47_16375	0.77	+2.5
3,471,831	+		IAI47_16375	0.77	+0.4
3,471,831	+		IAI47_16375	0.77	+0.4
3,471,831	+		IAI47_16375	0.77	+0.4
3,471,831	+		IAI47_16375	0.77	+2.4
3,471,831	+		IAI47_16375	0.77	+0.3
3,471,831	+		IAI47_16375	0.77	-0.6
3,471,832	-		IAI47_16375	0.77	+0.6
3,471,832	-		IAI47_16375	0.77	+2.1
3,471,832	-		IAI47_16375	0.77	+0.8
3,471,832	-		IAI47_16375	0.77	+0.1
3,471,832	-		IAI47_16375	0.77	-0.1
3,471,832	-		IAI47_16375	0.77	+2.2
3,471,832	-		IAI47_16375	0.77	+0.6
3,471,832	-		IAI47_16375	0.77	+0.8
3,471,832	-		IAI47_16375	0.77	+0.6
3,471,832	-		IAI47_16375	0.77	+2.1
3,471,832	-		IAI47_16375	0.77	-0.0
3,471,832	-		IAI47_16375	0.77	-0.6
3,471,905	+		IAI47_16375	0.84	-0.1
3,471,905	+		IAI47_16375	0.84	+0.9
3,471,906	-		IAI47_16375	0.84	-0.6
3,471,906	-		IAI47_16375	0.84	+1.4
3,471,906	-		IAI47_16375	0.84	+0.4
3,471,906	-		IAI47_16375	0.84	+1.7
3,471,936	+		IAI47_16375	0.87	+0.5
3,471,936	+		IAI47_16375	0.87	+0.8
3,471,936	+		IAI47_16375	0.87	-0.0
3,471,936	+		IAI47_16375	0.87	-0.3
3,471,937	-		IAI47_16375	0.87	-0.1
3,471,937	-		IAI47_16375	0.87	+1.1
3,471,961	+		IAI47_16375	0.90	+0.8
3,472,042	+				-0.1
3,472,042	+				+0.1
3,472,042	+				+0.4
3,472,042	+				-1.6
3,472,042	+				-0.3
3,472,042	+				-0.6
3,472,042	+				+0.4
3,472,042	+				-1.1
3,472,042	+				-1.2
3,472,043	-				-0.2
3,472,077	-				+2.4
3,472,077	-				+0.9
3,472,077	-				-0.3
3,472,085	+				+1.2
3,472,085	+				-0.4
3,472,086	-				-0.9
3,472,145	+				+0.4
3,472,145	+				+0.4
3,472,145	+				+1.2
3,472,145	+				-0.3
3,472,145	+				+2.6
3,472,145	+				+0.4
3,472,146	-				+0.8
3,472,146	-				+0.4
3,472,146	-				+1.0
3,472,146	-				+0.4
3,472,146	-				-0.4
3,472,146	-				+1.4
3,472,146	-				+0.8
3,472,164	+				+0.6
3,472,165	-				-2.0
3,472,174	-				+0.9
3,472,174	-				+0.9
3,472,194	+				-0.1
3,472,194	+				-0.6
3,472,194	+				-0.3
3,472,195	-				+1.1
3,472,433	+				+0.6
3,472,433	+				+0.5
3,472,433	+				-0.3
3,472,433	+				-0.2
3,472,501	+		IAI47_16390	0.56	-1.3
3,472,596	+				-0.2
3,472,597	-				+0.0
3,472,675	+				-0.3
3,472,676	-				+0.0
3,472,683	+				+1.7
3,472,684	-				-0.4
3,472,684	-				-1.5
3,472,684	-				-0.8
3,472,686	+				+1.1
3,472,687	-				+0.4
3,472,687	-				-1.2
3,472,687	-				-0.9
3,472,730	+		IAI47_16395	0.16	-0.6
3,472,731	-		IAI47_16395	0.16	+0.4
3,472,751	+		IAI47_16395	0.23	-0.2
3,472,752	-		IAI47_16395	0.24	-0.6
3,472,752	-		IAI47_16395	0.24	-0.1
3,472,752	-		IAI47_16395	0.24	-0.6
3,472,758	+		IAI47_16395	0.26	+0.4
3,472,758	+		IAI47_16395	0.26	-2.0
3,472,758	+		IAI47_16395	0.26	-0.2
3,472,758	+		IAI47_16395	0.26	+1.4
3,472,758	+		IAI47_16395	0.26	+0.4
3,472,777	+		IAI47_16395	0.32	+1.4
3,472,777	+		IAI47_16395	0.32	+0.4
3,472,777	+		IAI47_16395	0.32	-0.4
3,472,777	+		IAI47_16395	0.32	-0.8
3,472,777	+		IAI47_16395	0.32	+0.0
3,472,778	-		IAI47_16395	0.33	+2.6
3,472,778	-		IAI47_16395	0.33	+0.5
3,472,778	-		IAI47_16395	0.33	-0.6
3,472,778	-		IAI47_16395	0.33	+0.2
3,472,778	-		IAI47_16395	0.33	-0.0
3,472,781	+		IAI47_16395	0.34	-2.0
3,472,781	+		IAI47_16395	0.34	-0.3
3,472,781	+		IAI47_16395	0.34	+1.4
3,472,781	+		IAI47_16395	0.34	-1.1
3,472,781	+		IAI47_16395	0.34	+0.4
3,472,781	+		IAI47_16395	0.34	+0.2
3,472,781	+		IAI47_16395	0.34	-1.7
3,472,781	+		IAI47_16395	0.34	-0.6
3,472,781	+		IAI47_16395	0.34	+1.4
3,472,781	+		IAI47_16395	0.34	+0.4
3,472,782	-		IAI47_16395	0.34	-0.4
3,472,782	-		IAI47_16395	0.34	-0.6
3,472,782	-		IAI47_16395	0.34	+1.1
3,472,782	-		IAI47_16395	0.34	-0.6
3,472,782	-		IAI47_16395	0.34	+2.9
3,472,886	+		IAI47_16395	0.71	-0.3
3,472,886	+		IAI47_16395	0.71	+0.0
3,472,886	+		IAI47_16395	0.71	+0.2
3,472,886	+		IAI47_16395	0.71	-0.2
3,472,886	+		IAI47_16395	0.71	-1.1
3,472,886	+		IAI47_16395	0.71	-0.0
3,472,887	-		IAI47_16395	0.71	-1.1
3,472,887	-		IAI47_16395	0.71	-1.2
3,472,887	-		IAI47_16395	0.71	-0.6
3,472,887	-		IAI47_16395	0.71	+0.9
3,472,887	-		IAI47_16395	0.71	+0.0
3,472,887	-		IAI47_16395	0.71	+0.7
3,472,887	-		IAI47_16395	0.71	-2.0
3,472,887	-		IAI47_16395	0.71	-0.0
3,472,900	+		IAI47_16395	0.75	-0.6
3,472,901	-		IAI47_16395	0.76	+0.4
3,472,961	+				+2.1
3,472,962	-				+1.1
3,472,962	-				+0.4
3,472,962	-				-1.3
3,473,007	-				-1.6
3,473,082	+				-1.7
3,473,097	-				-0.2
3,473,105	+				-2.2
3,473,105	+				+1.2
3,473,106	-				+0.4
3,473,106	-				+0.4
3,473,106	-				+1.1
3,473,108	+				+2.4
3,473,108	+				-0.6
3,473,109	-				+0.5
3,473,124	-				-0.1
3,473,154	-				+0.1
3,473,173	+				-0.9
3,473,193	+				+0.9
3,473,193	+				+1.2
3,473,194	-				+0.9
3,473,194	-				-1.1
3,473,197	+				+0.9
3,473,197	+				+0.4
3,473,198	-				-0.4
3,473,198	-				-0.3
3,473,198	-				-0.1
3,473,199	+				+0.9
3,473,199	+				+0.1
3,473,200	-				-0.5
3,473,208	+				-3.0
3,473,208	+				+0.0
3,473,216	+				+1.7
3,473,216	+				+0.4
3,473,216	+				+2.7
3,473,217	-				-1.6
3,473,236	+				-0.3
3,473,236	+				-0.1
3,473,237	-				-0.6
3,473,294	+				-1.2
3,473,329	+		IAI47_16400	0.12	+1.1
3,473,370	+		IAI47_16400	0.15	+0.4
3,473,371	-		IAI47_16400	0.15	-0.7
3,473,376	+		IAI47_16400	0.16	-0.5
3,473,376	+		IAI47_16400	0.16	+0.0
3,473,377	-		IAI47_16400	0.16	+1.6
3,473,388	+		IAI47_16400	0.17	-0.9
3,473,389	-		IAI47_16400	0.17	+0.4
3,473,391	+		IAI47_16400	0.17	+0.0
3,473,464	+		IAI47_16400	0.24	+0.9
3,473,465	-		IAI47_16400	0.24	-0.8
3,473,465	-		IAI47_16400	0.24	+1.1
3,473,465	-		IAI47_16400	0.24	-0.8
3,473,465	-		IAI47_16400	0.24	-0.1
3,473,465	-		IAI47_16400	0.24	+0.4
3,473,484	+		IAI47_16400	0.26	-0.8
3,473,484	+		IAI47_16400	0.26	+0.4
3,473,484	+		IAI47_16400	0.26	+0.1
3,473,489	+		IAI47_16400	0.26	-0.2
3,473,489	+		IAI47_16400	0.26	+1.1
3,473,490	-		IAI47_16400	0.26	-0.8
3,473,509	+		IAI47_16400	0.28	-1.0
3,473,509	+		IAI47_16400	0.28	+1.2
3,473,509	+		IAI47_16400	0.28	-1.2
3,473,509	+		IAI47_16400	0.28	-0.4
3,473,513	-		IAI47_16400	0.28	+0.6
3,473,532	+		IAI47_16400	0.30	-0.1
3,473,532	+		IAI47_16400	0.30	-1.2
3,473,532	+		IAI47_16400	0.30	-0.6
3,473,532	+		IAI47_16400	0.30	-1.2
3,473,533	-		IAI47_16400	0.30	+1.9