Strain Fitness in Pantoea sp. MT58 around IAI47_16210

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
3,432,259	+		IAI47_16205	0.28	-3.2
3,432,260	-		IAI47_16205	0.28	-2.0
3,432,260	-		IAI47_16205	0.28	-1.2
3,432,260	-		IAI47_16205	0.28	-2.8
3,432,292	+		IAI47_16205	0.31	-2.8
3,432,293	-		IAI47_16205	0.31	-1.7
3,432,293	-		IAI47_16205	0.31	-4.1
3,432,293	-		IAI47_16205	0.31	-2.5
3,432,293	-		IAI47_16205	0.31	-0.7
3,432,293	-		IAI47_16205	0.31	-2.5
3,432,307	+		IAI47_16205	0.32	-2.2
3,432,308	-		IAI47_16205	0.32	-3.8
3,432,346	+		IAI47_16205	0.35	-4.1
3,432,353	-		IAI47_16205	0.36	-1.2
3,432,501	+		IAI47_16205	0.47	-3.0
3,432,501	+		IAI47_16205	0.47	-1.7
3,432,502	-		IAI47_16205	0.47	-2.0
3,432,502	-		IAI47_16205	0.47	-1.7
3,432,502	-		IAI47_16205	0.47	-2.2
3,432,504	+		IAI47_16205	0.47	+0.3
3,432,665	-		IAI47_16205	0.60	-3.1
3,432,741	+		IAI47_16205	0.66	-3.4
3,432,741	+		IAI47_16205	0.66	-3.2
3,432,742	-		IAI47_16205	0.66	-2.2
3,432,822	+		IAI47_16205	0.72	-2.5
3,432,822	+		IAI47_16205	0.72	-2.0
3,432,822	+		IAI47_16205	0.72	-2.7
3,432,823	-		IAI47_16205	0.72	-3.1
3,432,823	-		IAI47_16205	0.72	-3.5
3,432,823	-		IAI47_16205	0.72	-3.7
3,432,841	+		IAI47_16205	0.74	-1.7
3,432,841	+		IAI47_16205	0.74	-3.1
3,432,842	-		IAI47_16205	0.74	-2.8
3,432,862	+		IAI47_16205	0.75	-4.0
3,432,863	-		IAI47_16205	0.75	-3.1
3,432,952	+		IAI47_16205	0.82	-2.2
3,433,162	+				-3.5
3,433,163	-				-5.1
3,433,170	+				-2.5
3,433,170	+				-2.0
3,433,170	+				-4.7
3,433,170	+				-1.7
3,433,170	+				-2.7
3,433,171	-				-3.5
3,433,225	+				-3.0
3,433,225	+				-3.1
3,433,225	+				-0.7
3,433,225	+				-2.7
3,433,226	-				-3.6
3,433,226	-				-5.7
3,433,226	-				-3.6
3,433,254	+				-1.7
3,433,254	+				-1.7
3,433,255	-				-2.5
3,433,255	-				-3.0
3,433,255	-				-3.8
3,433,255	-				-3.6
3,433,255	-				-2.5
3,433,255	-				-2.7
3,433,339	+		IAI47_16210	0.17	-1.7
3,433,414	-		IAI47_16210	0.25	-0.7
3,433,468	+		IAI47_16210	0.31	-3.1
3,433,468	+		IAI47_16210	0.31	-2.0
3,433,468	+		IAI47_16210	0.31	-3.7
3,433,469	-		IAI47_16210	0.31	-0.7
3,433,469	-		IAI47_16210	0.31	-3.1
3,433,469	-		IAI47_16210	0.31	-3.8
3,433,469	-		IAI47_16210	0.31	-2.5
3,433,513	+		IAI47_16210	0.35	-3.9
3,433,514	-		IAI47_16210	0.35	-3.4
3,433,514	-		IAI47_16210	0.35	-2.8
3,433,514	-		IAI47_16210	0.35	-4.2
3,433,514	-		IAI47_16210	0.35	-2.0
3,433,514	-		IAI47_16210	0.35	-2.0
3,433,514	-		IAI47_16210	0.35	-3.6
3,433,530	+		IAI47_16210	0.37	-3.2
3,433,546	+		IAI47_16210	0.39	-4.7
3,433,585	-		IAI47_16210	0.43	-1.7
3,433,690	+		IAI47_16210	0.54	-2.5
3,433,690	+		IAI47_16210	0.54	-3.5
3,433,690	+		IAI47_16210	0.54	-1.7
3,433,690	+		IAI47_16210	0.54	-0.7
3,433,690	+		IAI47_16210	0.54	-4.9
3,433,691	-		IAI47_16210	0.55	-1.7
3,433,691	-		IAI47_16210	0.55	-2.5
3,433,691	-		IAI47_16210	0.55	-4.5
3,433,695	+		IAI47_16210	0.55	-4.0
3,433,695	+		IAI47_16210	0.55	-2.8
3,433,696	-		IAI47_16210	0.55	-1.7
3,433,696	-		IAI47_16210	0.55	-4.5
3,433,696	-		IAI47_16210	0.55	-3.7
3,433,696	-		IAI47_16210	0.55	-2.8
3,433,806	-		IAI47_16210	0.67	-3.1
3,433,806	-		IAI47_16210	0.67	-3.1
3,433,846	+		IAI47_16210	0.71	-1.7
3,433,846	+		IAI47_16210	0.71	-1.7
3,433,846	+		IAI47_16210	0.71	-2.0
3,433,846	+		IAI47_16210	0.71	-3.6
3,433,846	+		IAI47_16210	0.71	-2.8
3,433,847	-		IAI47_16210	0.71	-2.0
3,433,847	-		IAI47_16210	0.71	-2.8
3,433,847	-		IAI47_16210	0.71	-4.6
3,433,847	-		IAI47_16210	0.71	-2.8
3,433,847	-		IAI47_16210	0.71	-0.7
3,433,847	-		IAI47_16210	0.71	-2.2
3,433,917	+		IAI47_16210	0.79	-3.4
3,433,917	+		IAI47_16210	0.79	-4.5
3,433,917	+		IAI47_16210	0.79	-1.7
3,433,917	+		IAI47_16210	0.79	-4.5
3,433,917	+		IAI47_16210	0.79	-3.2
3,433,918	-		IAI47_16210	0.79	-2.5
3,433,918	-		IAI47_16210	0.79	-3.4
3,433,918	-		IAI47_16210	0.79	-4.4
3,433,924	+		IAI47_16210	0.80	-5.0
3,433,924	+		IAI47_16210	0.80	-2.2
3,433,924	+		IAI47_16210	0.80	-2.0
3,433,924	+		IAI47_16210	0.80	-3.7
3,433,924	+		IAI47_16210	0.80	-2.0
3,433,925	-		IAI47_16210	0.80	-3.1
3,433,925	-		IAI47_16210	0.80	-3.5
3,433,925	-		IAI47_16210	0.80	-4.8
3,434,117	+				-1.2
3,434,117	+				-2.7
3,434,117	+				-3.4
3,434,118	-				-2.2
3,434,118	-				-3.0
3,434,118	-				-2.7
3,434,118	-				-3.1
3,434,118	-				-4.2
3,434,118	-				-2.0
3,434,118	-				-4.1
3,434,142	+				-3.6
3,434,143	-				-0.2
3,434,143	-				-0.9
3,434,143	-				+0.7
3,434,195	+				-3.8
3,434,196	-				-2.0
3,434,196	-				-3.0
3,434,196	-				-2.2
3,434,226	-				-2.7
3,434,226	-				-1.2
3,434,226	-				-4.0
3,434,229	-				-1.2
3,434,237	+				-3.6
3,434,237	+				-3.7
3,434,237	+				-3.0
3,434,238	-				-3.8
3,434,271	+				-4.1
3,434,271	+				-4.6
3,434,271	+				-2.0
3,434,272	-				-1.7
3,434,273	+				-2.5
3,434,273	+				-3.2
3,434,274	-				-2.5
3,434,274	-				-0.7
3,434,274	-				-2.8
3,434,274	-				-2.5
3,434,313	+				-1.7
3,434,313	+				-2.2
3,434,313	+				-4.7
3,434,345	+				-3.5
3,434,346	-				-2.8
3,434,346	-				-3.4
3,434,346	-				-3.1
3,434,424	+		IAI47_16215	0.13	-2.8
3,434,424	+		IAI47_16215	0.13	-0.7
3,434,424	+		IAI47_16215	0.13	-1.2
3,434,424	+		IAI47_16215	0.13	-2.2
3,434,424	+		IAI47_16215	0.13	-1.2
3,434,424	+		IAI47_16215	0.13	-3.4
3,434,425	-		IAI47_16215	0.13	-2.8
3,434,425	-		IAI47_16215	0.13	+0.3
3,434,425	-		IAI47_16215	0.13	-1.2
3,434,425	-		IAI47_16215	0.13	-4.4
3,434,484	+		IAI47_16215	0.15	-0.7
3,434,484	+		IAI47_16215	0.15	-3.5
3,434,535	+		IAI47_16215	0.17	-2.0
3,434,652	+		IAI47_16215	0.22	-2.0
3,434,652	+		IAI47_16215	0.22	-2.0
3,434,653	-		IAI47_16215	0.22	-3.0
3,434,760	+		IAI47_16215	0.26	-2.7
3,434,765	+		IAI47_16215	0.26	-1.2
3,434,766	-		IAI47_16215	0.26	-2.2
3,434,813	+		IAI47_16215	0.28	-1.7
3,434,814	-		IAI47_16215	0.28	-0.7
3,434,814	-		IAI47_16215	0.28	-2.8
3,434,814	-		IAI47_16215	0.28	-2.8
3,434,814	-		IAI47_16215	0.28	-1.7
3,434,814	-		IAI47_16215	0.28	-2.5
3,434,816	+		IAI47_16215	0.28	-3.7
3,434,817	-		IAI47_16215	0.28	-2.0
3,434,817	-		IAI47_16215	0.28	-2.0
3,434,817	-		IAI47_16215	0.28	-3.7
3,434,888	+		IAI47_16215	0.31	-2.8
3,434,888	+		IAI47_16215	0.31	-3.0
3,434,888	+		IAI47_16215	0.31	-5.2
3,434,888	+		IAI47_16215	0.31	-2.7
3,434,888	+		IAI47_16215	0.31	-2.2
3,434,889	-		IAI47_16215	0.31	-2.2
3,434,948	+		IAI47_16215	0.34	-2.0
3,434,948	+		IAI47_16215	0.34	-2.0
3,434,948	+		IAI47_16215	0.34	-3.1
3,434,948	+		IAI47_16215	0.34	-3.4
3,434,948	+		IAI47_16215	0.34	-0.7
3,434,949	-		IAI47_16215	0.34	-3.6
3,434,949	-		IAI47_16215	0.34	-3.1
3,434,957	-		IAI47_16215	0.34	-2.0
3,434,983	-		IAI47_16215	0.35	-4.0
3,435,025	+		IAI47_16215	0.37	-1.2
3,435,025	+		IAI47_16215	0.37	-2.2
3,435,026	-		IAI47_16215	0.37	-3.5
3,435,026	-		IAI47_16215	0.37	-0.7
3,435,026	-		IAI47_16215	0.37	-0.7
3,435,026	-		IAI47_16215	0.37	-1.7
3,435,026	-		IAI47_16215	0.37	-2.0
3,435,033	+		IAI47_16215	0.37	-2.0
3,435,066	+		IAI47_16215	0.39	-5.2
3,435,067	-		IAI47_16215	0.39	-3.0
3,435,094	-		IAI47_16215	0.40	-3.6
3,435,094	-		IAI47_16215	0.40	-2.2
3,435,094	-		IAI47_16215	0.40	-2.5