Strain Fitness in Pantoea sp. MT58 around IAI47_16195

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
3,428,915	+		IAI47_16185	0.89	-0.0
3,428,915	+		IAI47_16185	0.89	+0.3
3,428,915	+		IAI47_16185	0.89	-0.4
3,428,916	-		IAI47_16185	0.89	-0.8
3,428,977	+				-0.1
3,428,978	-				-1.4
3,429,022	+				+1.3
3,429,022	+				-0.1
3,429,022	+				+0.8
3,429,022	+				+0.9
3,429,023	-				-2.0
3,429,023	-				-1.1
3,429,062	+				-0.2
3,429,062	+				-1.0
3,429,063	-				+0.2
3,429,063	-				+2.2
3,429,063	-				-1.2
3,429,065	+				+0.4
3,429,065	+				-0.5
3,429,066	-				+1.4
3,429,098	+				+0.3
3,429,104	+				+1.3
3,429,105	-				+1.7
3,429,107	+				-0.5
3,429,108	-				+0.3
3,429,109	+				+0.3
3,429,110	-				+1.2
3,429,142	+				-1.0
3,429,147	+				-1.2
3,429,166	-				+1.9
3,429,170	-				+0.2
3,429,173	+				+0.4
3,429,173	+				+0.1
3,429,173	+				+0.7
3,429,173	+				-1.8
3,429,186	+				-1.5
3,429,187	-				+1.1
3,429,187	-				+0.5
3,429,187	-				-0.8
3,429,197	+				-0.1
3,429,198	-				+0.8
3,429,238	+		IAI47_16190	0.12	-2.7
3,429,238	+		IAI47_16190	0.12	+0.9
3,429,239	-		IAI47_16190	0.12	+1.2
3,429,239	-		IAI47_16190	0.12	+1.7
3,429,258	+		IAI47_16190	0.15	+1.9
3,429,259	-		IAI47_16190	0.15	-0.4
3,429,259	-		IAI47_16190	0.15	-1.2
3,429,297	+		IAI47_16190	0.22	+0.3
3,429,298	-		IAI47_16190	0.22	-0.2
3,429,390	+		IAI47_16190	0.38	+0.3
3,429,543	+		IAI47_16190	0.64	+0.3
3,429,543	+		IAI47_16190	0.64	+0.0
3,429,544	-		IAI47_16190	0.64	-0.2
3,429,546	+		IAI47_16190	0.64	+0.9
3,429,546	+		IAI47_16190	0.64	-0.4
3,429,546	+		IAI47_16190	0.64	-0.4
3,429,546	+		IAI47_16190	0.64	-0.3
3,429,547	-		IAI47_16190	0.64	+3.1
3,429,697	+				-0.2
3,429,697	+				+0.6
3,429,697	+				-2.5
3,429,697	+				-1.7
3,429,697	+				+1.5
3,429,697	+				-0.7
3,429,697	+				-0.4
3,429,697	+				+2.9
3,429,697	+				-0.0
3,429,697	+				-0.7
3,429,698	-				+0.2
3,429,698	-				-0.9
3,429,698	-				-0.8
3,429,728	-				+1.3
3,429,744	+				+0.1
3,429,744	+				-0.1
3,429,744	+				+0.0
3,429,744	+				+0.6
3,429,749	+				+0.3
3,429,749	+				-0.7
3,429,749	+				-0.1
3,429,749	+				+0.8
3,429,749	+				-0.4
3,429,749	+				+0.9
3,429,749	+				+1.7
3,429,749	+				-0.5
3,429,750	-				-0.1
3,429,750	-				-0.5
3,429,750	-				-1.0
3,429,750	-				-0.3
3,429,750	-				-1.2
3,429,750	-				+0.2
3,429,759	+				+0.3
3,429,759	+				-0.3
3,429,759	+				-0.5
3,429,759	+				-0.1
3,429,760	-				-0.1
3,429,760	-				-0.2
3,429,760	-				+1.0
3,429,760	-				-0.3
3,429,794	-				+0.7
3,429,794	-				+0.3
3,429,794	-				+0.6
3,429,816	+				-1.4
3,429,816	+				-0.5
3,429,816	+				-0.0
3,429,816	+				-2.0
3,429,817	-				+3.4
3,429,817	-				-0.1
3,429,817	-				-0.7
3,429,819	+				+0.5
3,429,819	+				+0.6
3,429,819	+				-0.7
3,429,819	+				+0.3
3,429,819	+				+0.1
3,429,819	+				-0.0
3,429,819	+				+0.7
3,429,819	+				-0.1
3,429,819	+				+0.9
3,429,819	+				-0.5
3,429,819	+				-1.4
3,429,820	-				-0.6
3,429,820	-				-1.1
3,429,820	-				+0.8
3,429,820	-				+1.0
3,429,820	-				+0.1
3,429,820	-				-0.2
3,429,820	-				-0.1
3,429,820	-				-0.2
3,429,821	+				+0.1
3,429,821	+				-0.1
3,429,821	+				-0.5
3,429,821	+				+0.5
3,429,821	+				-1.8
3,429,821	+				+0.2
3,429,822	-				+1.0
3,429,822	-				+0.1
3,429,822	-				-0.7
3,429,822	-				+1.3
3,429,822	-				+0.0
3,429,941	-				-0.8
3,429,967	+				-0.2
3,429,967	+				+1.3
3,429,967	+				+0.1
3,429,968	-				+0.6
3,430,041	+		IAI47_16195	0.17	+1.3
3,430,041	+		IAI47_16195	0.17	+0.1
3,430,041	+		IAI47_16195	0.17	+1.1
3,430,041	+		IAI47_16195	0.17	-0.2
3,430,042	-		IAI47_16195	0.17	+2.5
3,430,051	+		IAI47_16195	0.18	-0.9
3,430,051	+		IAI47_16195	0.18	-2.0
3,430,182	+		IAI47_16195	0.32	-0.4
3,430,197	+		IAI47_16195	0.33	+0.3
3,430,197	+		IAI47_16195	0.33	+0.9
3,430,197	+		IAI47_16195	0.33	+0.3
3,430,197	+		IAI47_16195	0.33	-0.8
3,430,198	-		IAI47_16195	0.33	+0.3
3,430,198	-		IAI47_16195	0.33	+1.0
3,430,198	-		IAI47_16195	0.33	+0.0
3,430,200	+		IAI47_16195	0.33	-0.2
3,430,200	+		IAI47_16195	0.33	+2.3
3,430,200	+		IAI47_16195	0.33	-0.9
3,430,200	+		IAI47_16195	0.33	-0.3
3,430,200	+		IAI47_16195	0.33	-0.7
3,430,200	+		IAI47_16195	0.33	+0.3
3,430,200	+		IAI47_16195	0.33	+1.0
3,430,200	+		IAI47_16195	0.33	+0.1
3,430,200	+		IAI47_16195	0.33	+1.9
3,430,201	-		IAI47_16195	0.34	+0.1
3,430,201	-		IAI47_16195	0.34	-0.4
3,430,201	-		IAI47_16195	0.34	+0.3
3,430,201	-		IAI47_16195	0.34	-0.9
3,430,206	+		IAI47_16195	0.34	-1.8
3,430,207	-		IAI47_16195	0.34	+0.9
3,430,251	+		IAI47_16195	0.39	-0.3
3,430,251	+		IAI47_16195	0.39	+0.6
3,430,252	-		IAI47_16195	0.39	-0.1
3,430,252	-		IAI47_16195	0.39	+0.1
3,430,262	-		IAI47_16195	0.40	-0.8
3,430,262	-		IAI47_16195	0.40	-0.8
3,430,276	+		IAI47_16195	0.41	+0.3
3,430,276	+		IAI47_16195	0.41	+1.3
3,430,277	-		IAI47_16195	0.42	+1.2
3,430,278	+		IAI47_16195	0.42	+0.9
3,430,279	-		IAI47_16195	0.42	+0.3
3,430,279	-		IAI47_16195	0.42	+0.8
3,430,279	-		IAI47_16195	0.42	-1.2
3,430,375	+		IAI47_16195	0.52	+0.0
3,430,375	+		IAI47_16195	0.52	+0.3
3,430,375	+		IAI47_16195	0.52	-0.2
3,430,375	+		IAI47_16195	0.52	-0.7
3,430,376	-		IAI47_16195	0.52	+0.7
3,430,384	+		IAI47_16195	0.53	+0.3
3,430,384	+		IAI47_16195	0.53	+0.7
3,430,384	+		IAI47_16195	0.53	-0.1
3,430,384	+		IAI47_16195	0.53	+1.3
3,430,384	+		IAI47_16195	0.53	+0.8
3,430,385	-		IAI47_16195	0.53	+1.9
3,430,385	-		IAI47_16195	0.53	+1.9
3,430,429	+		IAI47_16195	0.57	+0.1
3,430,430	-		IAI47_16195	0.58	+1.3
3,430,430	-		IAI47_16195	0.58	+0.2
3,430,466	-		IAI47_16195	0.61	-1.0
3,430,479	+		IAI47_16195	0.63	+1.3
3,430,479	+		IAI47_16195	0.63	+2.3
3,430,480	-		IAI47_16195	0.63	+0.7
3,430,527	+		IAI47_16195	0.68	-0.0
3,430,527	+		IAI47_16195	0.68	-1.7
3,430,527	+		IAI47_16195	0.68	+1.1
3,430,527	+		IAI47_16195	0.68	+0.1
3,430,528	-		IAI47_16195	0.68	+0.2
3,430,528	-		IAI47_16195	0.68	+0.6
3,430,528	-		IAI47_16195	0.68	+1.6
3,430,666	+		IAI47_16195	0.82	+0.8
3,430,667	-		IAI47_16195	0.82	+0.8
3,430,667	-		IAI47_16195	0.82	+1.9
3,430,667	-		IAI47_16195	0.82	-0.7
3,430,667	-		IAI47_16195	0.82	+1.2
3,430,667	-		IAI47_16195	0.82	+2.3
3,430,687	+		IAI47_16195	0.84	-1.7
3,430,688	-		IAI47_16195	0.85	+1.3
3,430,693	-		IAI47_16195	0.85	+1.3
3,430,755	+				-1.6
3,430,755	+				-0.2
3,430,755	+				+0.2
3,430,755	+				+1.3
3,430,756	-				+1.2
3,430,793	+				+0.9
3,430,793	+				+0.8
3,430,793	+				+2.3
3,430,794	-				-0.7
3,430,794	-				+0.1
3,430,798	+				-1.7
3,430,798	+				-0.2
3,430,798	+				+1.9
3,430,798	+				+2.6
3,430,799	-				-1.7
3,430,799	-				+0.3
3,430,799	-				-0.4
3,430,799	-				+1.7
3,430,801	+				+0.5
3,430,801	+				+0.5
3,430,801	+				+2.9
3,430,801	+				-1.2
3,430,801	+				-0.2
3,430,801	+				-1.4
3,430,801	+				-1.7
3,430,801	+				+0.3
3,430,802	-				-0.1
3,430,802	-				-0.2
3,430,802	-				-0.4
3,430,802	-				+1.3
3,430,802	-				+0.3
3,430,802	-				-0.5
3,430,802	-				+0.5
3,430,802	-				-0.7
3,430,802	-				-0.3
3,430,802	-				+2.8
3,430,802	-				+0.9
3,430,819	+				-0.0
3,430,819	+				-1.0
3,430,819	+				-0.7
3,430,819	+				+1.3
3,430,820	-				+0.6
3,430,820	-				+0.1
3,430,820	-				+1.3
3,430,820	-				-0.7
3,430,820	-				+0.9
3,430,847	+				+0.6
3,430,847	+				+0.8
3,430,847	+				+0.4
3,430,847	+				+0.9
3,430,847	+				-2.5
3,430,847	+				+1.1
3,430,848	-				-0.0
3,430,848	-				+1.3
3,430,848	-				+0.1
3,430,851	+				+0.3
3,430,851	+				-1.8
3,430,851	+				+0.3
3,430,851	+				-0.9
3,430,852	-				+0.3
3,430,852	-				+1.7
3,430,852	-				+1.5
3,430,881	+				+2.3
3,430,884	+				-0.4
3,430,884	+				-0.7
3,430,884	+				+0.6
3,430,884	+				-1.1
3,430,885	-				+0.2
3,430,885	-				+1.2
3,430,885	-				-0.0
3,430,885	-				-0.9
3,430,885	-				-0.2
3,430,943	+				+2.3
3,430,943	+				+1.1
3,430,944	-				+1.7
3,430,944	-				-0.2
3,430,944	-				-0.1
3,430,995	+				-0.1
3,431,014	+				+0.9
3,431,015	-				-0.1
3,431,015	-				-0.8
3,431,015	-				-0.6
3,431,042	+				+0.9
3,431,042	+				-1.7
3,431,042	+				-0.6
3,431,042	+				+0.3
3,431,042	+				-0.3
3,431,042	+				-0.1
3,431,042	+				+0.2
3,431,043	-				+0.3
3,431,043	-				-0.1
3,431,066	+				+0.2
3,431,066	+				+0.3
3,431,079	+				+0.5
3,431,079	+				+1.0
3,431,079	+				+0.6
3,431,079	+				-0.0
3,431,079	+				+0.5
3,431,080	-				-1.8
3,431,080	-				-0.3
3,431,189	-		IAI47_16200	0.19	+2.7
3,431,234	+		IAI47_16200	0.25	-1.2
3,431,234	+		IAI47_16200	0.25	+0.5
3,431,235	-		IAI47_16200	0.25	+0.2
3,431,280	-		IAI47_16200	0.31	-0.1
3,431,291	+		IAI47_16200	0.32	+0.9
3,431,291	+		IAI47_16200	0.32	+0.2
3,431,291	+		IAI47_16200	0.32	+0.9
3,431,292	-		IAI47_16200	0.32	-0.9
3,431,304	+		IAI47_16200	0.34	-2.8
3,431,304	+		IAI47_16200	0.34	+0.9
3,431,304	+		IAI47_16200	0.34	+0.1
3,431,304	+		IAI47_16200	0.34	-0.3
3,431,304	+		IAI47_16200	0.34	+1.9
3,431,304	+		IAI47_16200	0.34	+0.4
3,431,304	+		IAI47_16200	0.34	+0.1
3,431,304	+		IAI47_16200	0.34	-0.3
3,431,304	+		IAI47_16200	0.34	-0.7
3,431,304	+		IAI47_16200	0.34	-0.4
3,431,304	+		IAI47_16200	0.34	-1.3
3,431,305	-		IAI47_16200	0.34	-0.5
3,431,305	-		IAI47_16200	0.34	+0.0
3,431,305	-		IAI47_16200	0.34	+1.3
3,431,305	-		IAI47_16200	0.34	+0.3
3,431,305	-		IAI47_16200	0.34	+1.3
3,431,305	-		IAI47_16200	0.34	-0.0
3,431,305	-		IAI47_16200	0.34	-0.9
3,431,305	-		IAI47_16200	0.34	+0.3
3,431,385	+		IAI47_16200	0.44	-0.7
3,431,385	+		IAI47_16200	0.44	+0.3
3,431,385	+		IAI47_16200	0.44	+0.1
3,431,385	+		IAI47_16200	0.44	+1.9
3,431,386	-		IAI47_16200	0.44	+1.2
3,431,463	-		IAI47_16200	0.54	-0.5
3,431,472	+		IAI47_16200	0.55	+1.6
3,431,473	-		IAI47_16200	0.56	+0.1
3,431,473	-		IAI47_16200	0.56	+0.8
3,431,473	-		IAI47_16200	0.56	+0.3
3,431,473	-		IAI47_16200	0.56	-0.2
3,431,565	+		IAI47_16200	0.67	-1.8
3,431,609	+		IAI47_16200	0.73	-0.3
3,431,609	+		IAI47_16200	0.73	-0.9
3,431,609	+		IAI47_16200	0.73	+0.3
3,431,610	-		IAI47_16200	0.73	+0.8
3,431,643	+		IAI47_16200	0.78	+0.0
3,431,643	+		IAI47_16200	0.78	-0.2
3,431,643	+		IAI47_16200	0.78	+0.6
3,431,643	+		IAI47_16200	0.78	-0.3
3,431,644	-		IAI47_16200	0.78	+1.9
3,431,644	-		IAI47_16200	0.78	+1.1
3,431,644	-		IAI47_16200	0.78	+1.6
3,431,644	-		IAI47_16200	0.78	+0.1
3,431,645	+		IAI47_16200	0.78	+1.6
3,431,645	+		IAI47_16200	0.78	-0.9
3,431,645	+		IAI47_16200	0.78	-1.0
3,431,646	-		IAI47_16200	0.78	-0.5
3,431,646	-		IAI47_16200	0.78	-0.7
3,431,646	-		IAI47_16200	0.78	-0.5
3,431,646	-		IAI47_16200	0.78	+0.7
3,431,646	-		IAI47_16200	0.78	-1.5
3,431,654	+		IAI47_16200	0.79	+2.7
3,431,655	-		IAI47_16200	0.79	+0.6
3,431,661	+		IAI47_16200	0.80	+0.2
3,431,661	+		IAI47_16200	0.80	+1.9
3,431,662	-		IAI47_16200	0.80	+1.7
3,431,662	-		IAI47_16200	0.80	-0.5
3,431,662	-		IAI47_16200	0.80	-0.2
3,431,694	+		IAI47_16200	0.84	+0.7
3,431,694	+		IAI47_16200	0.84	+0.1
3,431,694	+		IAI47_16200	0.84	-1.5
3,431,694	+		IAI47_16200	0.84	-0.6
3,431,695	-		IAI47_16200	0.84	-0.3
3,431,695	-		IAI47_16200	0.84	+1.3
3,431,732	+		IAI47_16200	0.89	-0.0
3,431,732	+		IAI47_16200	0.89	-0.5
3,431,732	+		IAI47_16200	0.89	-0.1
3,431,732	+		IAI47_16200	0.89	+0.1
3,431,732	+		IAI47_16200	0.89	+0.1
3,431,733	-		IAI47_16200	0.89	-0.8
3,431,733	-		IAI47_16200	0.89	+0.2
3,431,733	-		IAI47_16200	0.89	-1.7
3,431,754	+				+1.9
3,431,755	-				-0.1
3,431,798	+				-1.1
3,431,815	-				-0.5
3,431,833	+				-0.4
3,431,834	-				+0.7
3,431,834	-				+0.5