Strain Fitness in Pantoea sp. MT58 around IAI47_16085

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
3,401,746	+				-2.0
3,401,969	+		IAI47_16080	0.29	-0.7
3,402,061	+		IAI47_16080	0.38	-1.7
3,402,061	+		IAI47_16080	0.38	-0.1
3,402,091	+		IAI47_16080	0.41	-1.2
3,402,091	+		IAI47_16080	0.41	-1.7
3,402,156	+		IAI47_16080	0.48	+0.1
3,402,156	+		IAI47_16080	0.48	-0.4
3,402,172	+		IAI47_16080	0.49	-2.2
3,402,172	+		IAI47_16080	0.49	-0.7
3,402,175	+		IAI47_16080	0.49	+1.3
3,402,230	+		IAI47_16080	0.55	-1.1
3,402,289	+		IAI47_16080	0.61	-1.7
3,402,289	+		IAI47_16080	0.61	-0.1
3,402,289	+		IAI47_16080	0.61	-1.2
3,402,293	+		IAI47_16080	0.61	-2.2
3,402,293	+		IAI47_16080	0.61	-1.8
3,402,293	+		IAI47_16080	0.61	-0.2
3,402,293	+		IAI47_16080	0.61	-1.8
3,402,293	+		IAI47_16080	0.61	+0.3
3,402,294	-		IAI47_16080	0.61	-3.0
3,402,307	+		IAI47_16080	0.63	-0.1
3,402,361	+		IAI47_16080	0.68	+0.3
3,402,361	+		IAI47_16080	0.68	-2.7
3,402,361	+		IAI47_16080	0.68	-3.6
3,402,397	+		IAI47_16080	0.72	-2.2
3,402,397	+		IAI47_16080	0.72	-1.2
3,402,439	+		IAI47_16080	0.76	-1.7
3,402,439	+		IAI47_16080	0.76	-0.2
3,402,443	+		IAI47_16080	0.76	-1.7
3,402,443	+		IAI47_16080	0.76	+1.2
3,402,443	+		IAI47_16080	0.76	+0.9
3,402,476	+		IAI47_16080	0.80	-0.9
3,402,476	+		IAI47_16080	0.80	-0.1
3,402,527	+		IAI47_16080	0.85	-0.2
3,402,528	+		IAI47_16080	0.85	-2.0
3,402,532	+		IAI47_16080	0.85	+0.0
3,402,532	+		IAI47_16080	0.85	-2.0
3,402,532	+		IAI47_16080	0.85	+1.3
3,402,532	+		IAI47_16080	0.85	-3.6
3,402,532	+		IAI47_16080	0.85	-0.8
3,402,532	+		IAI47_16080	0.85	-0.7
3,402,532	+		IAI47_16080	0.85	-0.5
3,402,532	+		IAI47_16080	0.85	-0.7
3,402,532	+		IAI47_16080	0.85	-0.2
3,402,532	+		IAI47_16080	0.85	-1.9
3,402,652	+				-0.3
3,402,652	+				+0.2
3,402,652	+				-0.4
3,402,652	+				+0.3
3,402,652	+				-1.3
3,402,652	+				+2.6
3,402,667	+				-0.2
3,402,927	-		IAI47_16085	0.31	+1.9
3,403,014	+		IAI47_16085	0.42	+0.7
3,403,073	+		IAI47_16085	0.49	-2.3
3,403,130	+		IAI47_16085	0.56	-2.1
3,403,292	+		IAI47_16085	0.76	-2.7
3,403,437	+				-2.3
3,403,488	+				+0.7
3,403,488	+				+0.0
3,403,488	+				+0.5
3,403,489	-				-0.0
3,403,489	-				-0.3
3,403,536	+		IAI47_16090	0.11	-1.7
3,403,536	+		IAI47_16090	0.11	+1.3
3,403,537	-		IAI47_16090	0.11	-0.3
3,403,572	+		IAI47_16090	0.21	+2.9
3,403,572	+		IAI47_16090	0.21	+0.9
3,403,572	+		IAI47_16090	0.21	+0.8
3,403,572	+		IAI47_16090	0.21	+0.3
3,403,572	+		IAI47_16090	0.21	-0.4
3,403,572	+		IAI47_16090	0.21	-1.7
3,403,573	-		IAI47_16090	0.21	+2.9
3,403,573	-		IAI47_16090	0.21	+0.3
3,403,573	-		IAI47_16090	0.21	+0.1
3,403,584	+		IAI47_16090	0.24	+0.6
3,403,584	+		IAI47_16090	0.24	-0.0
3,403,584	+		IAI47_16090	0.24	-0.7
3,403,585	-		IAI47_16090	0.24	+1.3
3,403,585	-		IAI47_16090	0.24	-0.1
3,403,587	-		IAI47_16090	0.25	+0.3
3,403,592	+		IAI47_16090	0.26	+1.3
3,403,592	+		IAI47_16090	0.26	-0.7
3,403,592	+		IAI47_16090	0.26	-1.0
3,403,593	-		IAI47_16090	0.26	-0.8
3,403,649	+		IAI47_16090	0.41	+0.3
3,403,649	+		IAI47_16090	0.41	+0.3
3,403,649	+		IAI47_16090	0.41	-1.5
3,403,650	-		IAI47_16090	0.41	+1.1
3,403,737	+		IAI47_16090	0.64	+0.3
3,403,737	+		IAI47_16090	0.64	-0.7
3,403,788	+		IAI47_16090	0.78	-1.9
3,403,788	+		IAI47_16090	0.78	+0.3
3,403,788	+		IAI47_16090	0.78	-0.5
3,403,788	+		IAI47_16090	0.78	+0.3
3,403,788	+		IAI47_16090	0.78	-0.7
3,403,788	+		IAI47_16090	0.78	+1.1
3,403,789	-		IAI47_16090	0.78	+0.6
3,403,789	-		IAI47_16090	0.78	+0.3
3,403,789	-		IAI47_16090	0.78	+0.5
3,403,789	-		IAI47_16090	0.78	+1.3
3,403,789	-		IAI47_16090	0.78	+2.3
3,403,789	-		IAI47_16090	0.78	-1.1
3,403,789	-		IAI47_16090	0.78	+0.2
3,403,789	-		IAI47_16090	0.78	+0.7
3,403,789	-		IAI47_16090	0.78	+0.6
3,403,789	-		IAI47_16090	0.78	+0.7
3,403,869	+				+0.3
3,403,869	+				+1.3
3,403,869	+				-0.3
3,403,869	+				-0.3
3,403,869	+				-0.4
3,403,870	-				+1.5
3,403,870	-				-0.1
3,403,870	-				+0.8
3,403,870	-				+0.7
3,403,877	-				+0.1
3,403,894	-				+0.3
3,403,894	-				+1.5
3,403,916	+				-0.6
3,403,924	+				+1.3
3,403,925	-				-0.1
3,403,925	-				+0.1
3,403,925	-				+1.1
3,403,934	+				+1.1
3,403,961	+				+2.9
3,403,962	-				+1.7
3,403,972	-				+1.2
3,403,972	-				+2.5
3,404,079	+		IAI47_16095	0.18	+0.9
3,404,145	-		IAI47_16095	0.26	-0.4
3,404,162	-		IAI47_16095	0.28	-1.0
3,404,162	-		IAI47_16095	0.28	-2.3
3,404,164	+		IAI47_16095	0.28	+0.5
3,404,164	+		IAI47_16095	0.28	+1.0
3,404,165	-		IAI47_16095	0.28	+1.1
3,404,165	-		IAI47_16095	0.28	+0.3
3,404,247	+		IAI47_16095	0.38	+1.9
3,404,349	+		IAI47_16095	0.49	+1.7
3,404,366	+		IAI47_16095	0.51	+1.3
3,404,390	+		IAI47_16095	0.54	+1.3
3,404,390	+		IAI47_16095	0.54	+1.0
3,404,391	-		IAI47_16095	0.54	+1.9
3,404,391	-		IAI47_16095	0.54	+0.6