Strain Fitness in Pantoea sp. MT58 around IAI47_15975

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
3,372,586	-		IAI47_15970	0.21	-2.3
3,372,647	-		IAI47_15970	0.27	+1.3
3,372,697	-		IAI47_15970	0.32	+0.9
3,372,844	-		IAI47_15970	0.48	-0.1
3,372,844	-		IAI47_15970	0.48	-0.3
3,373,080	-		IAI47_15970	0.73	-1.5
3,373,333	-				+0.9
3,373,333	-				-0.7
3,373,333	-				+1.0
3,373,333	-				+1.3
3,373,333	-				+0.1
3,373,333	-				-0.8
3,373,333	-				+0.7
3,373,333	-				-0.0
3,373,333	-				-1.4
3,373,333	-				+0.2
3,373,333	-				+0.2
3,373,333	-				-0.7
3,373,333	-				+2.1
3,373,337	-				+1.6
3,373,337	-				-1.5
3,373,337	-				+0.6
3,373,337	-				+1.1
3,373,337	-				-0.2
3,373,337	-				-0.4
3,373,337	-				+0.9
3,373,337	-				+0.1
3,373,337	-				+1.1
3,373,337	-				+0.7
3,373,337	-				+0.3
3,373,337	-				+0.2
3,373,366	-				+0.0
3,373,366	-				-1.0
3,373,418	-		IAI47_15975	0.18	-0.4
3,373,449	-		IAI47_15975	0.25	-1.2
3,373,506	-		IAI47_15975	0.37	-0.3
3,373,506	-		IAI47_15975	0.37	-3.4
3,373,506	-		IAI47_15975	0.37	-0.7
3,373,506	-		IAI47_15975	0.37	-2.6
3,373,506	-		IAI47_15975	0.37	-1.5
3,373,599	-		IAI47_15975	0.58	-0.9
3,373,599	-		IAI47_15975	0.58	-0.1
3,373,652	-		IAI47_15975	0.69	-1.7
3,373,652	-		IAI47_15975	0.69	+0.6
3,373,652	-		IAI47_15975	0.69	-1.4
3,373,686	-		IAI47_15975	0.76	-0.5
3,373,686	-		IAI47_15975	0.76	-0.2
3,373,686	-		IAI47_15975	0.76	-0.3
3,373,686	-		IAI47_15975	0.76	-0.4
3,373,822	-				+1.7
3,373,859	+				-1.1
3,373,859	+				+0.3
3,373,859	+				-1.7
3,373,914	-				-0.7
3,373,914	-				-0.3
3,373,944	+				+0.7
3,373,944	+				-0.2
3,373,945	-				-2.3
3,373,947	-				+1.3
3,373,947	-				-0.7
3,373,954	+				-1.3
3,373,955	-				-1.4
3,373,986	+				+1.7
3,373,986	+				+0.5
3,373,987	-				-0.0
3,373,987	-				-1.5
3,373,995	-				-1.3
3,374,038	+				+2.1
3,374,038	+				+0.3
3,374,039	-				-0.8
3,374,039	-				-0.6
3,374,039	-				+0.7
3,374,050	+				-1.7
3,374,050	+				-1.9
3,374,050	+				+0.8
3,374,051	-				-2.0
3,374,051	-				+0.3
3,374,051	-				-0.9
3,374,051	-				-1.4
3,374,051	-				+0.8
3,374,085	+				+1.7
3,374,086	-				+0.1
3,374,151	+				+0.3
3,374,159	+				+0.3
3,374,159	+				-1.8
3,374,159	+				+0.3
3,374,159	+				+0.1
3,374,160	-				-0.3
3,374,160	-				+1.3
3,374,160	-				-2.0
3,374,160	-				+1.7
3,374,162	+				+1.0
3,374,162	+				-0.2
3,374,162	+				+1.3
3,374,163	-				-1.5
3,374,163	-				-0.3
3,374,163	-				-0.0
3,374,167	-				+0.3
3,374,234	+				-0.9
3,374,235	-				+1.4
3,374,254	-				+1.3
3,374,254	-				+1.9
3,374,265	+				-0.1
3,374,265	+				-0.1
3,374,265	+				-0.4
3,374,265	+				-0.2
3,374,265	+				-0.8
3,374,265	+				+0.8
3,374,265	+				-0.8
3,374,265	+				-0.1
3,374,265	+				+0.5
3,374,266	-				+4.3
3,374,266	-				-1.7
3,374,266	-				+0.6
3,374,267	+				-1.5
3,374,267	+				-0.4
3,374,267	+				-2.3
3,374,267	+				-0.0
3,374,267	+				-0.3
3,374,267	+				+0.5
3,374,267	+				+1.2
3,374,267	+				+0.3
3,374,268	-				+1.2
3,374,268	-				-0.8
3,374,268	-				-0.7
3,374,268	-				+2.5
3,374,268	-				+1.3
3,374,268	-				-0.7
3,374,268	-				+0.7
3,374,268	-				-1.3
3,374,268	-				-1.0
3,374,268	-				-1.1
3,374,270	+				-0.2
3,374,271	-				-0.1
3,374,289	-				+0.7
3,374,301	+				-1.8
3,374,301	+				-2.0
3,374,301	+				-0.8
3,374,317	+				-2.5
3,374,318	-				+0.3
3,374,318	-				+0.0
3,374,318	-				-0.9
3,374,320	-				-1.5
3,374,324	+				-2.7
3,374,325	-				-1.5
3,374,340	+				-2.0
3,374,340	+				-1.3
3,374,379	+				-2.8
3,374,379	+				-1.5
3,374,380	-				-0.7
3,374,386	-		IAI47_15980	0.10	-0.7
3,374,460	+		IAI47_15980	0.18	-3.6
3,374,460	+		IAI47_15980	0.18	+0.1
3,374,599	+		IAI47_15980	0.31	-1.3
3,374,600	-		IAI47_15980	0.31	-0.9
3,374,647	+		IAI47_15980	0.36	-1.1
3,374,647	+		IAI47_15980	0.36	-0.7
3,374,648	-		IAI47_15980	0.36	-3.0
3,374,648	-		IAI47_15980	0.36	-1.1
3,374,651	+		IAI47_15980	0.36	+0.3
3,374,651	+		IAI47_15980	0.36	-3.0
3,374,651	+		IAI47_15980	0.36	-1.8
3,374,651	+		IAI47_15980	0.36	-1.7
3,374,652	-		IAI47_15980	0.36	-2.3
3,374,652	-		IAI47_15980	0.36	-1.3
3,374,652	-		IAI47_15980	0.36	-2.1
3,374,653	+		IAI47_15980	0.37	-3.4
3,374,653	+		IAI47_15980	0.37	-1.7
3,374,653	+		IAI47_15980	0.37	-3.0
3,374,653	+		IAI47_15980	0.37	-2.8
3,374,653	-		IAI47_15980	0.37	-3.0
3,374,654	-		IAI47_15980	0.37	-1.4
3,374,654	-		IAI47_15980	0.37	-2.0
3,374,654	-		IAI47_15980	0.37	-1.2
3,374,654	-		IAI47_15980	0.37	-2.0
3,374,654	-		IAI47_15980	0.37	+0.3
3,374,654	-		IAI47_15980	0.37	-2.0
3,374,654	-		IAI47_15980	0.37	+0.9