Strain Fitness in Pantoea sp. MT58 around IAI47_15110

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
3,184,266	+		IAI47_15100	0.79	+0.6
3,184,266	+		IAI47_15100	0.79	-0.7
3,184,266	+		IAI47_15100	0.79	+0.9
3,184,266	+		IAI47_15100	0.79	+0.0
3,184,267	-		IAI47_15100	0.80	+1.5
3,184,267	-		IAI47_15100	0.80	-0.5
3,184,306	+		IAI47_15100	0.88	+1.0
3,184,306	+		IAI47_15100	0.88	+0.1
3,184,306	+		IAI47_15100	0.88	+0.1
3,184,306	+		IAI47_15100	0.88	+1.7
3,184,306	+		IAI47_15100	0.88	+0.7
3,184,306	+		IAI47_15100	0.88	+1.6
3,184,307	-		IAI47_15100	0.88	+0.3
3,184,307	-		IAI47_15100	0.88	+0.3
3,184,307	-		IAI47_15100	0.88	+1.3
3,184,321	+				+0.6
3,184,321	+				+0.1
3,184,321	+				+0.6
3,184,321	+				+0.7
3,184,321	+				-1.1
3,184,322	-				+2.9
3,184,322	-				-0.3
3,184,322	-				-0.4
3,184,322	-				+0.9
3,184,322	-				+0.6
3,184,322	-				+0.3
3,184,341	+				-2.0
3,184,341	+				-0.7
3,184,361	+				-0.5
3,184,361	+				+0.8
3,184,383	+				-0.0
3,184,383	+				-0.4
3,184,383	+				+1.3
3,184,384	-				-0.1
3,184,384	-				+0.5
3,184,384	-				+1.0
3,184,407	-				-0.4
3,184,410	+				+0.2
3,184,411	-				-0.5
3,184,411	-				+0.9
3,184,411	-				-0.5
3,184,411	-				+0.3
3,184,411	-				+0.8
3,184,411	-				-2.0
3,184,414	+				+0.3
3,184,414	+				-0.9
3,184,415	-				+0.1
3,184,415	-				-0.5
3,184,431	+				-0.3
3,184,431	+				+0.3
3,184,432	-				+1.0
3,184,432	-				+0.5
3,184,432	-				-0.3
3,184,432	-				+0.6
3,184,479	-				+0.8
3,184,486	-				+0.8
3,184,486	-				+0.7
3,184,520	+				-0.0
3,184,521	-				+2.2
3,184,521	-				-0.4
3,184,578	+				-0.2
3,184,579	-				-1.0
3,184,795	+		IAI47_15105	0.82	+0.5
3,184,795	+		IAI47_15105	0.82	+0.2
3,184,795	+		IAI47_15105	0.82	+0.1
3,184,796	-		IAI47_15105	0.83	+0.7
3,184,796	-		IAI47_15105	0.83	+0.1
3,184,796	-		IAI47_15105	0.83	-0.3
3,184,827	+				-0.1
3,184,828	-				-1.7
3,184,843	+				+0.3
3,184,843	+				-0.7
3,184,844	-				-0.0
3,184,844	-				+0.4
3,184,863	+				+0.8
3,184,863	+				+0.8
3,184,863	+				-1.0
3,184,864	-				-1.4
3,184,864	-				+0.4
3,184,922	+				+1.0
3,184,922	+				+1.5
3,184,922	+				-0.8
3,184,922	+				+2.2
3,184,922	+				-0.3
3,184,923	-				-0.6
3,184,923	-				-1.3
3,184,924	+				+0.3
3,184,924	+				+0.2
3,184,925	-				+0.5
3,184,957	-				-0.9
3,184,975	+				-0.7
3,184,976	-				-1.0
3,184,976	-				+1.2
3,184,989	+				-1.3
3,184,990	-				+0.2
3,185,057	+				-1.2
3,185,057	+				-0.3
3,185,057	+				-1.6
3,185,057	+				-0.7
3,185,057	+				+0.7
3,185,090	+				-1.1
3,185,090	+				-1.1
3,185,091	-				+1.3
3,185,141	+				+0.7
3,185,141	+				+0.3
3,185,155	+				+0.5
3,185,155	+				+0.5
3,185,156	-				+0.6
3,185,163	-				+0.8
3,185,282	+				-1.3
3,185,282	+				-1.9
3,185,301	+				-0.6
3,185,301	+				-1.3
3,185,448	+		IAI47_15110	0.25	-1.7
3,185,448	+		IAI47_15110	0.25	-2.3
3,185,449	-		IAI47_15110	0.25	+0.3
3,185,449	-		IAI47_15110	0.25	+0.3
3,185,454	+		IAI47_15110	0.26	-0.3
3,185,454	+		IAI47_15110	0.26	-1.3
3,185,454	+		IAI47_15110	0.26	-2.0
3,185,454	+		IAI47_15110	0.26	+1.9
3,185,455	-		IAI47_15110	0.26	+0.3
3,185,526	+		IAI47_15110	0.36	-2.9
3,185,526	+		IAI47_15110	0.36	+1.6
3,185,526	+		IAI47_15110	0.36	-1.3
3,185,541	+		IAI47_15110	0.38	+1.3
3,185,606	+		IAI47_15110	0.46	-1.3
3,185,606	+		IAI47_15110	0.46	-1.3
3,185,607	-		IAI47_15110	0.47	-1.3
3,185,607	-		IAI47_15110	0.47	-2.5
3,185,622	+		IAI47_15110	0.49	-1.3
3,185,686	-		IAI47_15110	0.57	-1.9
3,185,691	+		IAI47_15110	0.58	+0.9
3,185,721	+		IAI47_15110	0.62	-2.6
3,185,721	+		IAI47_15110	0.62	-2.7
3,185,722	-		IAI47_15110	0.62	-1.3
3,185,980	-				-0.3
3,185,980	-				-1.7
3,185,980	-				-2.7
3,185,980	-				+0.3
3,185,999	-				+0.3
3,185,999	-				-0.1
3,186,002	+				-0.7
3,186,005	+				-1.7
3,186,025	-				+0.8
3,186,025	-				+0.2
3,186,025	-				-1.0
3,186,034	+				-0.7
3,186,035	-				+0.1
3,186,062	+				-1.4
3,186,063	-				-1.0
3,186,064	+				-0.3
3,186,064	+				-2.1
3,186,065	-				-1.3
3,186,079	-				+0.3
3,186,086	-				+0.3
3,186,107	+				-1.4
3,186,108	-				-0.5
3,186,108	-				-0.4
3,186,111	+				-1.4
3,186,111	+				-0.3
3,186,111	+				+0.4
3,186,111	+				-1.0
3,186,111	+				+0.7
3,186,112	-				+1.1
3,186,112	-				-0.2
3,186,112	-				-0.7
3,186,117	+				+0.3
3,186,209	+				-0.0
3,186,210	-				-0.0
3,186,221	+				+0.2
3,186,221	+				-0.3
3,186,221	+				-0.0
3,186,221	+				+0.3
3,186,221	+				+0.3
3,186,221	+				+2.6
3,186,221	+				-0.1
3,186,222	-				+0.3
3,186,222	-				+0.5
3,186,222	-				+0.9
3,186,222	-				+0.2
3,186,222	-				+0.7
3,186,222	-				+0.5
3,186,277	+				-0.6
3,186,278	-				+0.9
3,186,360	-				+0.7
3,186,373	-				+0.1
3,186,373	-				+0.3
3,186,373	-				-0.7
3,186,373	-				+1.9
3,186,396	+				-0.7
3,186,396	+				-0.7
3,186,397	-				-3.0
3,186,398	+				-1.7
3,186,398	+				+0.3
3,186,398	+				-1.3
3,186,398	+				-1.3
3,186,398	+				-0.7
3,186,399	-				-2.9
3,186,399	-				-2.3
3,186,399	-				-1.7
3,186,399	-				-0.7
3,186,518	+		IAI47_15115	0.13	-2.0
3,186,519	-		IAI47_15115	0.13	-2.9
3,186,519	-		IAI47_15115	0.13	-2.5
3,186,519	-		IAI47_15115	0.13	+0.3
3,186,561	+		IAI47_15115	0.16	+0.3
3,186,561	+		IAI47_15115	0.16	-1.7
3,186,567	+		IAI47_15115	0.17	-2.3
3,186,568	-		IAI47_15115	0.17	-1.7
3,186,568	-		IAI47_15115	0.17	-2.3
3,186,570	+		IAI47_15115	0.17	-2.3
3,186,582	+		IAI47_15115	0.18	-2.0
3,186,582	+		IAI47_15115	0.18	-2.5
3,186,582	+		IAI47_15115	0.18	-2.0
3,186,582	+		IAI47_15115	0.18	-2.0
3,186,583	-		IAI47_15115	0.18	-1.7
3,186,583	-		IAI47_15115	0.18	-1.3
3,186,583	-		IAI47_15115	0.18	-1.7
3,186,610	-		IAI47_15115	0.20	-2.0
3,186,651	+		IAI47_15115	0.23	-0.7
3,186,652	-		IAI47_15115	0.23	-2.3
3,186,657	+		IAI47_15115	0.24	-2.3
3,186,658	-		IAI47_15115	0.24	-2.7
3,186,658	-		IAI47_15115	0.24	-0.7
3,186,658	-		IAI47_15115	0.24	-1.3
3,186,686	+		IAI47_15115	0.26	-2.9
3,186,686	+		IAI47_15115	0.26	-2.0
3,186,686	+		IAI47_15115	0.26	-2.9
3,186,686	+		IAI47_15115	0.26	-2.3
3,186,686	+		IAI47_15115	0.26	-2.5
3,186,686	+		IAI47_15115	0.26	-0.7
3,186,687	-		IAI47_15115	0.26	-0.7
3,186,687	-		IAI47_15115	0.26	-0.7
3,186,687	-		IAI47_15115	0.26	-1.5
3,186,687	-		IAI47_15115	0.26	-2.5
3,186,687	-		IAI47_15115	0.26	-3.3
3,186,852	+		IAI47_15115	0.39	-2.0
3,186,853	-		IAI47_15115	0.39	-3.7
3,186,853	-		IAI47_15115	0.39	-2.9
3,186,853	-		IAI47_15115	0.39	-2.3
3,186,853	-		IAI47_15115	0.39	-3.5
3,186,929	+		IAI47_15115	0.46	-2.0
3,186,929	+		IAI47_15115	0.46	-2.0
3,186,929	+		IAI47_15115	0.46	-2.7
3,186,929	+		IAI47_15115	0.46	-1.3
3,186,930	-		IAI47_15115	0.46	-1.7
3,186,930	-		IAI47_15115	0.46	-2.5
3,186,930	-		IAI47_15115	0.46	-1.3
3,186,930	-		IAI47_15115	0.46	-3.5
3,186,930	-		IAI47_15115	0.46	-2.3
3,186,930	-		IAI47_15115	0.46	+0.3
3,186,934	-		IAI47_15115	0.46	-1.3
3,186,934	-		IAI47_15115	0.46	-1.3
3,186,934	-		IAI47_15115	0.46	-2.7
3,186,993	+		IAI47_15115	0.51	-2.0
3,186,993	+		IAI47_15115	0.51	-1.7
3,186,993	+		IAI47_15115	0.51	-4.3
3,186,994	-		IAI47_15115	0.51	-4.7