Strain Fitness in Pantoea sp. MT58 around IAI47_14445

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
3,050,982	+		IAI47_14440	0.24	-1.7
3,050,982	+		IAI47_14440	0.24	-0.2
3,050,982	+		IAI47_14440	0.24	+0.8
3,050,983	-		IAI47_14440	0.24	+0.2
3,050,983	-		IAI47_14440	0.24	-0.1
3,050,983	-		IAI47_14440	0.24	-0.7
3,051,033	+		IAI47_14440	0.29	-0.2
3,051,033	+		IAI47_14440	0.29	-1.8
3,051,033	+		IAI47_14440	0.29	-0.2
3,051,033	+		IAI47_14440	0.29	+0.8
3,051,034	-		IAI47_14440	0.29	-0.1
3,051,034	-		IAI47_14440	0.29	-0.1
3,051,034	-		IAI47_14440	0.29	-0.5
3,051,034	-		IAI47_14440	0.29	-1.0
3,051,061	+		IAI47_14440	0.32	-0.7
3,051,062	-		IAI47_14440	0.32	+0.5
3,051,062	-		IAI47_14440	0.32	+0.3
3,051,147	-		IAI47_14440	0.41	+0.8
3,051,215	-		IAI47_14440	0.48	+0.0
3,051,215	-		IAI47_14440	0.48	-0.1
3,051,216	+		IAI47_14440	0.48	+0.1
3,051,216	+		IAI47_14440	0.48	-0.7
3,051,216	+		IAI47_14440	0.48	-0.2
3,051,217	-		IAI47_14440	0.48	-1.1
3,051,234	+		IAI47_14440	0.50	+0.6
3,051,234	+		IAI47_14440	0.50	-0.5
3,051,270	+		IAI47_14440	0.54	-0.1
3,051,270	+		IAI47_14440	0.54	+1.2
3,051,271	-		IAI47_14440	0.54	+0.3
3,051,271	-		IAI47_14440	0.54	-0.7
3,051,382	+		IAI47_14440	0.65	-1.0
3,051,383	-		IAI47_14440	0.65	-0.7
3,051,383	-		IAI47_14440	0.65	+0.2
3,051,414	+		IAI47_14440	0.69	-2.0
3,051,414	+		IAI47_14440	0.69	-1.2
3,051,414	+		IAI47_14440	0.69	-1.7
3,051,414	+		IAI47_14440	0.69	-0.5
3,051,414	+		IAI47_14440	0.69	-0.2
3,051,414	+		IAI47_14440	0.69	-1.0
3,051,414	+		IAI47_14440	0.69	-1.7
3,051,414	+		IAI47_14440	0.69	-0.7
3,051,415	-		IAI47_14440	0.69	+0.2
3,051,415	-		IAI47_14440	0.69	+1.0
3,051,415	-		IAI47_14440	0.69	-0.7
3,051,415	-		IAI47_14440	0.69	+0.2
3,051,415	-		IAI47_14440	0.69	-1.7
3,051,415	-		IAI47_14440	0.69	+0.3
3,051,415	-		IAI47_14440	0.69	-0.5
3,051,415	-		IAI47_14440	0.69	+0.8
3,051,439	+		IAI47_14440	0.71	-1.2
3,051,439	+		IAI47_14440	0.71	+1.0
3,051,440	-		IAI47_14440	0.71	+1.1
3,051,440	-		IAI47_14440	0.71	-0.7
3,051,440	-		IAI47_14440	0.71	-2.5
3,051,440	-		IAI47_14440	0.71	+0.8
3,051,481	-		IAI47_14440	0.76	-1.2
3,051,481	-		IAI47_14440	0.76	+1.2
3,051,488	+		IAI47_14440	0.76	-0.7
3,051,522	+		IAI47_14440	0.80	+0.3
3,051,522	+		IAI47_14440	0.80	-0.1
3,051,530	-		IAI47_14440	0.81	+0.0
3,051,530	-		IAI47_14440	0.81	+2.7
3,051,636	+				-0.4
3,051,643	+				+0.3
3,051,644	-				+0.8
3,051,644	-				-2.2
3,051,673	+				-0.1
3,051,678	-				-1.5
3,051,678	-				-0.0
3,051,678	-				-0.4
3,051,690	-				+1.1
3,051,703	+				-0.8
3,051,703	+				+0.9
3,051,703	+				-2.2
3,051,703	+				+0.7
3,051,704	-				+1.8
3,051,704	-				+0.8
3,051,771	+				-0.2
3,051,771	+				-1.4
3,051,781	+				-0.2
3,051,791	+				+0.0
3,051,810	-				-0.1
3,051,810	-				+1.5
3,051,810	-				+0.7
3,051,813	-				-2.0
3,051,844	-				+1.0
3,051,844	-				+0.3
3,052,638	+				+0.7
3,052,639	-				+0.8
3,052,689	+		IAI47_14450	0.12	+0.3
3,052,689	+		IAI47_14450	0.12	+0.3
3,052,689	+		IAI47_14450	0.12	+0.1
3,052,690	-		IAI47_14450	0.13	+0.2
3,052,690	-		IAI47_14450	0.13	-0.7
3,052,690	-		IAI47_14450	0.13	-0.2
3,052,690	-		IAI47_14450	0.13	+0.8
3,052,722	+		IAI47_14450	0.16	+0.1
3,052,722	+		IAI47_14450	0.16	-0.9
3,052,722	+		IAI47_14450	0.16	-0.2
3,052,722	+		IAI47_14450	0.16	-0.7
3,052,722	+		IAI47_14450	0.16	+1.5
3,052,723	-		IAI47_14450	0.16	-0.1
3,052,723	-		IAI47_14450	0.16	+0.0
3,052,809	+		IAI47_14450	0.26	+0.1
3,052,809	+		IAI47_14450	0.26	+0.9
3,052,809	+		IAI47_14450	0.26	+0.3
3,052,810	-		IAI47_14450	0.26	+0.3
3,052,898	+		IAI47_14450	0.36	+1.3
3,052,898	+		IAI47_14450	0.36	-0.1
3,052,898	+		IAI47_14450	0.36	+0.5
3,052,899	-		IAI47_14450	0.36	-0.5
3,052,940	+		IAI47_14450	0.41	+0.3
3,052,940	+		IAI47_14450	0.41	+0.3
3,052,940	+		IAI47_14450	0.41	+0.6
3,052,940	+		IAI47_14450	0.41	+0.3
3,052,940	+		IAI47_14450	0.41	+0.4
3,052,950	+		IAI47_14450	0.42	-0.4
3,052,951	-		IAI47_14450	0.42	-0.7
3,052,951	-		IAI47_14450	0.42	+0.0
3,052,951	-		IAI47_14450	0.42	-0.1
3,052,951	-		IAI47_14450	0.42	-1.2
3,052,972	+		IAI47_14450	0.44	+0.2
3,052,973	-		IAI47_14450	0.45	+0.2
3,052,998	+		IAI47_14450	0.47	+0.2
3,052,999	-		IAI47_14450	0.47	-0.7
3,053,041	-		IAI47_14450	0.52	-0.7
3,053,041	-		IAI47_14450	0.52	+0.3
3,053,045	-		IAI47_14450	0.53	+0.0
3,053,072	-				-0.2
3,053,164	+		IAI47_14450	0.66	-0.8
3,053,164	+		IAI47_14450	0.66	+0.1
3,053,173	+		IAI47_14450	0.67	+0.9
3,053,173	+		IAI47_14450	0.67	+0.8
3,053,174	-		IAI47_14450	0.67	-1.1
3,053,174	-		IAI47_14450	0.67	+0.0
3,053,196	+		IAI47_14450	0.70	-0.5
3,053,196	+		IAI47_14450	0.70	-0.2
3,053,196	+		IAI47_14450	0.70	+0.3
3,053,196	+		IAI47_14450	0.70	+0.1
3,053,197	-		IAI47_14450	0.70	+0.2
3,053,197	-		IAI47_14450	0.70	-1.0
3,053,197	-		IAI47_14450	0.70	+0.3
3,053,211	+		IAI47_14450	0.71	-0.7
3,053,211	+		IAI47_14450	0.71	+2.4
3,053,211	+		IAI47_14450	0.71	+1.1
3,053,211	+		IAI47_14450	0.71	+0.3
3,053,211	+		IAI47_14450	0.71	-1.2
3,053,211	+		IAI47_14450	0.71	+1.0
3,053,211	+		IAI47_14450	0.71	-0.5
3,053,212	-		IAI47_14450	0.72	+0.1
3,053,212	-		IAI47_14450	0.72	-0.1
3,053,212	-		IAI47_14450	0.72	+1.5
3,053,212	-		IAI47_14450	0.72	-0.2
3,053,212	-		IAI47_14450	0.72	-1.2
3,053,212	-		IAI47_14450	0.72	+0.6
3,053,212	-		IAI47_14450	0.72	-0.1
3,053,224	+		IAI47_14450	0.73	-0.2
3,053,224	+		IAI47_14450	0.73	+0.3
3,053,247	+		IAI47_14450	0.75	+0.1
3,053,248	-		IAI47_14450	0.76	-1.5
3,053,250	+		IAI47_14450	0.76	+1.5
3,053,250	+		IAI47_14450	0.76	-0.1
3,053,250	+		IAI47_14450	0.76	+0.6
3,053,250	+		IAI47_14450	0.76	+0.5
3,053,250	+		IAI47_14450	0.76	+1.7
3,053,250	+		IAI47_14450	0.76	-2.0
3,053,250	+		IAI47_14450	0.76	-0.7
3,053,251	-		IAI47_14450	0.76	-2.0
3,053,251	-		IAI47_14450	0.76	+1.9
3,053,251	-		IAI47_14450	0.76	-0.5
3,053,251	-		IAI47_14450	0.76	-0.4
3,053,251	-		IAI47_14450	0.76	-0.1
3,053,292	+		IAI47_14450	0.81	+0.7
3,053,292	+		IAI47_14450	0.81	+1.2
3,053,292	+		IAI47_14450	0.81	+2.4
3,053,292	+		IAI47_14450	0.81	+0.6
3,053,293	-		IAI47_14450	0.81	-1.2
3,053,341	+		IAI47_14450	0.86	+0.5
3,053,342	-		IAI47_14450	0.86	+0.9
3,053,446	+				+0.0