Strain Fitness in Pantoea sp. MT58 around IAI47_14350

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
3,030,566	-				-0.7
3,030,566	-				+0.0
3,030,566	-				-0.9
3,030,630	-				-1.2
3,030,678	+				-2.5
3,030,679	-				-2.5
3,030,733	+				-1.2
3,030,816	+		IAI47_14350	0.23	-1.2
3,030,816	+		IAI47_14350	0.23	-3.8
3,030,816	+		IAI47_14350	0.23	-2.8
3,030,817	-		IAI47_14350	0.23	-1.2
3,030,817	-		IAI47_14350	0.23	-1.7
3,030,817	-		IAI47_14350	0.23	-2.0
3,030,817	-		IAI47_14350	0.23	-2.5
3,030,832	+		IAI47_14350	0.26	-3.6
3,030,842	-		IAI47_14350	0.28	-3.4
3,030,892	+		IAI47_14350	0.38	-2.2
3,030,892	+		IAI47_14350	0.38	-2.7
3,030,892	+		IAI47_14350	0.38	-2.2
3,030,893	-		IAI47_14350	0.38	-1.2
3,030,893	-		IAI47_14350	0.38	-1.7
3,030,893	-		IAI47_14350	0.38	+0.3
3,030,893	-		IAI47_14350	0.38	-2.2
3,030,928	+		IAI47_14350	0.45	-1.7
3,030,928	+		IAI47_14350	0.45	-1.7
3,030,928	+		IAI47_14350	0.45	-3.8
3,030,928	+		IAI47_14350	0.45	-3.8
3,030,929	-		IAI47_14350	0.46	-3.8
3,030,929	-		IAI47_14350	0.46	-3.5
3,030,929	-		IAI47_14350	0.46	-2.8
3,030,929	-		IAI47_14350	0.46	-3.8
3,030,929	-		IAI47_14350	0.46	-0.7
3,030,967	-		IAI47_14350	0.53	-2.0
3,030,987	+		IAI47_14350	0.57	-1.2
3,030,988	-		IAI47_14350	0.57	-3.1
3,030,988	-		IAI47_14350	0.57	-2.8
3,031,007	+		IAI47_14350	0.61	-0.7
3,031,007	+		IAI47_14350	0.61	-1.2
3,031,008	-		IAI47_14350	0.61	-3.8
3,031,242	+				-1.2
3,031,242	+				-2.5
3,031,243	-				-2.2
3,031,243	-				-1.7
3,031,243	-				-2.2
3,031,243	-				-0.7
3,031,243	-				-3.1
3,031,243	-				-2.2
3,031,243	-				-2.2
3,031,282	+				-3.2
3,031,417	-		IAI47_14355	0.20	-3.6
3,031,650	+		IAI47_14355	0.42	-1.7
3,031,650	+		IAI47_14355	0.42	-2.8
3,031,650	+		IAI47_14355	0.42	-1.7
3,031,651	-		IAI47_14355	0.42	-2.5
3,031,651	-		IAI47_14355	0.42	-2.0
3,031,651	-		IAI47_14355	0.42	-1.2
3,031,651	-		IAI47_14355	0.42	-1.7
3,031,651	-		IAI47_14355	0.42	-2.0
3,031,724	+		IAI47_14355	0.49	-2.2
3,031,724	+				-0.7
3,031,724	+		IAI47_14355	0.49	-3.0
3,031,724	+		IAI47_14355	0.49	-3.8
3,031,724	+		IAI47_14355	0.49	-3.1
3,031,724	+		IAI47_14355	0.49	-4.6
3,031,724	+		IAI47_14355	0.49	-2.2
3,031,725	-		IAI47_14355	0.49	-3.0
3,031,725	-		IAI47_14355	0.49	-0.7
3,031,725	-		IAI47_14355	0.49	-2.2
3,031,725	-		IAI47_14355	0.49	-1.2
3,031,725	-		IAI47_14355	0.49	-3.9
3,031,725	-		IAI47_14355	0.49	-2.0
3,031,725	-		IAI47_14355	0.49	-1.2
3,031,728	-		IAI47_14355	0.49	+0.3
3,031,729	+		IAI47_14355	0.50	-2.0
3,031,729	+		IAI47_14355	0.50	-3.1
3,031,730	-		IAI47_14355	0.50	-3.9
3,031,730	-		IAI47_14355	0.50	-3.0
3,031,743	+		IAI47_14355	0.51	-2.5
3,031,743	+		IAI47_14355	0.51	-2.0
3,031,744	-		IAI47_14355	0.51	-2.2
3,031,744	-		IAI47_14355	0.51	-2.0
3,031,744	-		IAI47_14355	0.51	-4.0
3,031,744	-		IAI47_14355	0.51	-2.8
3,031,778	+		IAI47_14355	0.54	-1.7
3,031,779	-		IAI47_14355	0.54	-1.2
3,031,839	+		IAI47_14355	0.60	-4.3
3,031,839	+		IAI47_14355	0.60	-2.0
3,031,839	+		IAI47_14355	0.60	-1.7
3,031,839	+		IAI47_14355	0.60	-4.4
3,031,839	+		IAI47_14355	0.60	-1.7
3,031,840	-		IAI47_14355	0.60	-2.0
3,031,840	-		IAI47_14355	0.60	-2.2
3,031,840	-		IAI47_14355	0.60	-1.2
3,031,840	-		IAI47_14355	0.60	-0.7
3,031,840	-		IAI47_14355	0.60	-2.5
3,031,855	+		IAI47_14355	0.61	-2.2
3,031,855	+		IAI47_14355	0.61	-3.1
3,031,855	+		IAI47_14355	0.61	-3.1
3,031,855	+		IAI47_14355	0.61	-3.1
3,031,856	-		IAI47_14355	0.62	-2.0
3,031,887	+		IAI47_14355	0.64	-3.4
3,031,909	-		IAI47_14355	0.66	-2.8
3,032,027	+		IAI47_14355	0.78	-4.6
3,032,027	+		IAI47_14355	0.78	-2.5
3,032,027	+		IAI47_14355	0.78	-2.2
3,032,027	+		IAI47_14355	0.78	-2.0
3,032,027	+		IAI47_14355	0.78	-2.7
3,032,050	-		IAI47_14355	0.80	-4.5
3,032,114	-		IAI47_14355	0.86	-4.6