Strain Fitness in Pantoea sp. MT58 around IAI47_13700

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
2,901,022	-				-0.8
2,901,022	-				+0.8
2,901,386	+		IAI47_13695	0.85	-1.3
2,901,460	-				+0.7
2,901,460	-				-1.7
2,901,460	-				+0.1
2,901,464	-				+1.7
2,901,464	-				+0.3
2,901,464	-				-2.0
2,901,468	-				+0.3
2,901,468	-				+0.6
2,901,468	-				+0.3
2,901,474	-				+0.2
2,901,574	+		IAI47_13700	0.16	+0.3
2,901,575	-		IAI47_13700	0.16	-0.7
2,901,575	-		IAI47_13700	0.16	-2.3
2,901,690	-		IAI47_13700	0.33	-1.3
2,901,734	-		IAI47_13700	0.40	-2.3
2,901,734	-		IAI47_13700	0.40	-2.3
2,901,837	-		IAI47_13700	0.55	-2.0
2,901,887	+		IAI47_13700	0.62	-3.0
2,901,953	-		IAI47_13700	0.71	-0.9
2,901,953	-		IAI47_13700	0.71	-2.5
2,902,029	-		IAI47_13700	0.83	-2.0
2,902,047	-		IAI47_13700	0.85	-2.0
2,902,047	-		IAI47_13700	0.85	-1.0
2,902,092	-				-2.8
2,902,092	-				-1.0
2,902,092	-				-1.7
2,902,092	-				+1.3
2,902,168	+				-0.7
2,902,169	-				+0.8
2,902,169	-				-1.0
2,902,169	-				-0.2
2,902,169	-				+0.6
2,902,196	+		IAI47_13705	0.13	-1.7
2,902,197	-		IAI47_13705	0.13	+2.5
2,902,197	-		IAI47_13705	0.13	-1.0
2,902,197	-		IAI47_13705	0.13	+0.3
2,902,197	-		IAI47_13705	0.13	-1.3
2,902,208	-		IAI47_13705	0.16	+0.3
2,902,208	-		IAI47_13705	0.16	-0.5
2,902,208	-		IAI47_13705	0.16	+0.5
2,902,208	-		IAI47_13705	0.16	+0.5
2,902,256	-		IAI47_13705	0.27	-0.3
2,902,354	-		IAI47_13705	0.52	+0.3
2,902,354	-		IAI47_13705	0.52	-0.2
2,902,354	-		IAI47_13705	0.52	-0.3
2,902,354	-		IAI47_13705	0.52	-0.5
2,902,397	+		IAI47_13705	0.62	-2.1
2,902,398	-		IAI47_13705	0.62	+0.6
2,902,442	-		IAI47_13705	0.73	+0.7
2,902,467	+		IAI47_13705	0.80	+0.3
2,902,468	-		IAI47_13705	0.80	+0.5
2,902,468	-		IAI47_13705	0.80	-0.4
2,902,468	-		IAI47_13705	0.80	+1.6
2,902,468	-		IAI47_13705	0.80	-0.4
2,902,468	-		IAI47_13705	0.80	+0.2
2,902,501	+		IAI47_13705	0.88	-1.0
2,902,502	-		IAI47_13705	0.88	+0.6
2,902,502	-		IAI47_13705	0.88	-1.0
2,902,502	-		IAI47_13705	0.88	+0.1
2,902,509	+				-1.7
2,902,510	-				-0.2
2,902,544	-				-1.4
2,902,544	-				-0.7
2,902,552	+				-2.8
2,902,553	-				-0.9
2,902,553	-				+0.3
2,902,553	-				-1.3
2,902,553	-				-0.8
2,902,553	-				-0.5
2,902,571	-				-0.1
2,902,580	+				-1.0
2,902,581	-				+2.1
2,902,581	-				+0.8
2,902,581	-				-0.3
2,902,581	-				-0.1
2,902,581	-				+1.3
2,902,583	+				-0.7
2,902,583	+				-1.5
2,902,584	-				-0.3
2,902,584	-				+0.1
2,902,584	-				+0.5
2,902,584	-				-0.7
2,902,584	-				-0.7
2,902,585	+				-0.3
2,902,585	+				-2.0
2,902,585	+				-2.3
2,902,586	-				-1.3
2,902,586	-				+1.2
2,902,634	+				+0.2
2,902,635	-				+1.1
2,902,635	-				+2.3
2,902,635	-				-0.3
2,902,675	+				+2.1
2,902,676	-				+1.1
2,902,697	+				+0.0
2,902,697	+				-1.8
2,902,697	+				+0.1
2,902,698	-				-0.6
2,902,698	-				-0.7
2,902,698	-				-0.7
2,902,729	+				+1.8
2,902,729	+				+0.3
2,902,729	+				+0.1
2,902,729	+				+0.1
2,902,729	+				-1.3
2,902,729	+				-1.3
2,902,730	-				+0.7
2,902,730	-				-0.5
2,902,730	-				+0.5
2,902,730	-				-1.3
2,902,730	-				-1.0
2,902,743	+				+0.6
2,902,755	-				+0.3
2,902,758	+		IAI47_13710	0.10	-0.2
2,902,759	-		IAI47_13710	0.11	-0.4
2,902,759	-		IAI47_13710	0.11	+0.2
2,902,759	-		IAI47_13710	0.11	-0.7
2,902,759	-		IAI47_13710	0.11	+1.5
2,902,759	-		IAI47_13710	0.11	-0.5
2,902,784	+		IAI47_13710	0.19	+0.3
2,902,826	+		IAI47_13710	0.33	-0.0
2,902,827	-		IAI47_13710	0.34	-0.4
2,902,972	-		IAI47_13710	0.83	-0.7
2,902,996	+				-0.3
2,902,996	+				+0.8
2,902,996	+				+0.7
2,902,996	+				+2.8
2,902,996	+				+0.9
2,902,996	+				+0.3
2,902,997	-				+0.3
2,902,997	-				+0.7
2,902,997	-				-0.2
2,903,015	+				+0.7
2,903,015	+				-0.3
2,903,016	-				+0.2
2,903,016	-				-0.8
2,903,016	-				+0.9
2,903,074	+		IAI47_13715	0.50	+2.8
2,903,139	-				+0.1
2,903,139	-				+0.1
2,903,143	-				+2.3
2,903,143	-				+0.2
2,903,143	-				-0.9