Strain Fitness in Pantoea sp. MT58 around IAI47_12470

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
2,627,467	-		IAI47_12465	0.45	+0.1
2,627,467	-		IAI47_12465	0.45	-0.7
2,627,475	+		IAI47_12465	0.45	-0.7
2,627,475	+		IAI47_12465	0.45	-0.2
2,627,475	+		IAI47_12465	0.45	-0.2
2,627,475	+		IAI47_12465	0.45	-0.4
2,627,475	+		IAI47_12465	0.45	+0.9
2,627,476	-		IAI47_12465	0.46	-0.1
2,627,476	-		IAI47_12465	0.46	+0.1
2,627,476	-		IAI47_12465	0.46	+1.9
2,627,510	+		IAI47_12465	0.47	+1.6
2,627,510	+		IAI47_12465	0.47	-0.7
2,627,510	+		IAI47_12465	0.47	+0.7
2,627,510	+		IAI47_12465	0.47	+2.9
2,627,511	-		IAI47_12465	0.47	-0.3
2,627,541	-		IAI47_12465	0.49	+0.9
2,627,541	-		IAI47_12465	0.49	-0.3
2,627,541	-		IAI47_12465	0.49	+0.7
2,627,563	+		IAI47_12465	0.50	-0.6
2,627,563	+		IAI47_12465	0.50	-0.4
2,627,564	-		IAI47_12465	0.50	+1.3
2,627,629	+		IAI47_12465	0.54	-0.4
2,627,629	+		IAI47_12465	0.54	+0.8
2,627,698	+		IAI47_12465	0.58	+0.1
2,627,698	+		IAI47_12465	0.58	+1.3
2,627,698	+		IAI47_12465	0.58	-1.4
2,627,698	+		IAI47_12465	0.58	+0.3
2,627,698	+		IAI47_12465	0.58	-0.4
2,627,699	-		IAI47_12465	0.58	+0.5
2,627,834	+		IAI47_12465	0.65	-0.4
2,627,834	+		IAI47_12465	0.65	+0.0
2,627,834	+		IAI47_12465	0.65	-0.2
2,627,834	+		IAI47_12465	0.65	-1.7
2,627,834	+		IAI47_12465	0.65	-1.1
2,627,834	+		IAI47_12465	0.65	+1.6
2,627,835	-		IAI47_12465	0.65	+0.1
2,627,835	-		IAI47_12465	0.65	-0.1
2,627,835	-		IAI47_12465	0.65	+0.8
2,627,835	-		IAI47_12465	0.65	-0.3
2,627,835	-		IAI47_12465	0.65	-0.2
2,627,835	-		IAI47_12465	0.65	+1.1
2,627,835	-		IAI47_12465	0.65	+0.9
2,627,841	-		IAI47_12465	0.65	-0.1
2,627,870	+		IAI47_12465	0.67	+0.3
2,627,893	+		IAI47_12465	0.68	-0.1
2,627,893	+		IAI47_12465	0.68	+0.4
2,627,894	-		IAI47_12465	0.68	+0.8
2,627,894	-		IAI47_12465	0.68	+1.7
2,627,911	+		IAI47_12465	0.69	-0.6
2,627,911	+		IAI47_12465	0.69	-1.7
2,627,912	-		IAI47_12465	0.69	+0.3
2,627,912	-		IAI47_12465	0.69	-1.7
2,627,968	+		IAI47_12465	0.72	-0.7
2,627,968	+		IAI47_12465	0.72	-0.7
2,628,000	+		IAI47_12465	0.74	-0.7
2,628,000	+		IAI47_12465	0.74	-0.9
2,628,000	+		IAI47_12465	0.74	+0.3
2,628,000	+		IAI47_12465	0.74	-1.5
2,628,000	+		IAI47_12465	0.74	+0.9
2,628,000	+		IAI47_12465	0.74	+0.2
2,628,000	+		IAI47_12465	0.74	+0.7
2,628,000	+		IAI47_12465	0.74	-0.7
2,628,001	-		IAI47_12465	0.74	+2.3
2,628,001	-		IAI47_12465	0.74	+0.6
2,628,001	-		IAI47_12465	0.74	+1.0
2,628,001	-		IAI47_12465	0.74	+0.0
2,628,001	-		IAI47_12465	0.74	-1.4
2,628,001	-		IAI47_12465	0.74	-0.6
2,628,001	-		IAI47_12465	0.74	-0.3
2,628,006	-		IAI47_12465	0.74	+1.9
2,628,068	-		IAI47_12465	0.78	-0.3
2,628,068	-		IAI47_12465	0.78	-0.9
2,628,143	+		IAI47_12465	0.82	+0.0
2,628,144	-		IAI47_12465	0.82	+0.3
2,628,144	-		IAI47_12465	0.82	+0.9
2,628,144	-		IAI47_12465	0.82	+1.3
2,628,163	+		IAI47_12465	0.83	+0.9
2,628,163	+		IAI47_12465	0.83	-0.4
2,628,163	+		IAI47_12465	0.83	+0.1
2,628,163	+		IAI47_12465	0.83	+2.9
2,628,164	-		IAI47_12465	0.83	+0.3
2,628,164	-		IAI47_12465	0.83	+1.9
2,628,164	-		IAI47_12465	0.83	-1.5
2,628,170	-		IAI47_12465	0.83	+0.1
2,628,170	-		IAI47_12465	0.83	-1.5
2,628,176	+		IAI47_12465	0.84	+0.3
2,628,176	+		IAI47_12465	0.84	-0.1
2,628,177	-		IAI47_12465	0.84	+1.1
2,628,177	-		IAI47_12465	0.84	-0.1
2,628,198	-		IAI47_12465	0.85	+1.0
2,628,198	-		IAI47_12465	0.85	-0.7
2,628,199	+		IAI47_12465	0.85	-0.3
2,628,200	-		IAI47_12465	0.85	-0.1
2,628,200	-		IAI47_12465	0.85	-0.1
2,628,200	-		IAI47_12465	0.85	+0.3
2,628,200	-		IAI47_12465	0.85	+0.7
2,628,223	+		IAI47_12465	0.86	+0.3
2,628,223	+		IAI47_12465	0.86	-0.5
2,628,223	+		IAI47_12465	0.86	-1.7
2,628,223	+		IAI47_12465	0.86	+0.3
2,628,224	-		IAI47_12465	0.86	+0.6
2,628,224	-		IAI47_12465	0.86	+0.5
2,628,224	-		IAI47_12465	0.86	+1.9
2,628,224	-		IAI47_12465	0.86	-1.0
2,628,227	+		IAI47_12465	0.87	-0.7
2,628,227	+		IAI47_12465	0.87	-0.9
2,628,227	+		IAI47_12465	0.87	+0.3
2,628,228	-		IAI47_12465	0.87	+0.3
2,628,228	-		IAI47_12465	0.87	+0.5
2,628,228	-		IAI47_12465	0.87	-1.3
2,628,228	-		IAI47_12465	0.87	-1.0
2,628,228	-		IAI47_12465	0.87	+0.0
2,628,288	-		IAI47_12465	0.90	-0.3
2,628,288	-		IAI47_12465	0.90	-0.1
2,628,288	-		IAI47_12465	0.90	+0.8
2,628,337	+				+0.4
2,628,337	+				-0.3
2,628,338	-				-0.7
2,628,338	-				-0.1
2,628,375	+				-0.5
2,628,375	+				-0.1
2,628,375	+				-0.5
2,628,375	+				+1.4
2,628,375	+				-0.8
2,628,376	-				+0.6
2,628,376	-				+2.1
2,628,376	-				-0.4
2,628,376	-				-1.1
2,628,376	-				+1.9
2,628,379	+				+1.3
2,628,379	+				+0.7
2,628,379	+				+0.9
2,628,379	+				+0.6
2,628,379	+				+0.0
2,628,379	+				+1.0
2,628,379	+				-0.7
2,628,379	+				+0.3
2,628,380	-				+0.5
2,628,380	-				+1.7
2,628,380	-				+0.3
2,628,380	-				-0.1
2,628,380	-				+0.3
2,628,380	-				+0.5
2,628,380	-				-0.3
2,628,380	-				+0.6
2,628,380	-				+2.6
2,628,380	-				+0.9
2,628,380	-				+0.6
2,628,380	-				-0.1
2,628,380	-				+0.7
2,628,403	+				+1.4
2,628,403	+				-0.1
2,628,403	+				+0.3
2,628,403	+				+0.3
2,628,403	+				+0.8
2,628,403	+				-1.0
2,628,403	+				-0.3
2,628,403	+				-1.0
2,628,404	-				+0.6
2,628,404	-				-1.5
2,628,404	-				-0.6
2,628,404	-				-0.7
2,628,404	-				-1.7
2,628,432	+				-3.6
2,628,432	+				-0.1
2,628,474	+				-1.1
2,628,474	+				-1.5
2,628,475	-				-0.7
2,628,495	+				-0.5
2,628,495	+				-0.6
2,628,496	-				-0.3
2,628,496	-				-1.5
2,628,496	-				-0.7
2,628,497	+				-0.3
2,628,497	+				-2.7
2,628,497	+				+0.0
2,628,497	+				-1.3
2,628,497	+				-2.1
2,628,497	+				-1.5
2,628,498	-				-0.7
2,628,498	-				-0.3
2,628,498	-				-1.7
2,628,498	-				-1.3
2,628,498	-				-2.1
2,628,498	-				+0.3
2,628,526	+				-0.9
2,628,527	-				-2.9
2,628,527	-				+0.3
2,628,532	+		IAI47_12470	0.10	-1.7
2,628,532	+		IAI47_12470	0.10	-2.4
2,628,532	+		IAI47_12470	0.10	-2.5
2,628,533	-		IAI47_12470	0.10	-4.6
2,628,533	-		IAI47_12470	0.10	-1.5
2,628,533	-		IAI47_12470	0.10	-1.1
2,628,533	-		IAI47_12470	0.10	-2.9
2,628,546	+		IAI47_12470	0.12	-2.4
2,628,546	+		IAI47_12470	0.12	-1.1
2,628,546	+		IAI47_12470	0.12	-1.1
2,628,555	+		IAI47_12470	0.13	-2.8
2,628,556	-		IAI47_12470	0.14	-2.9
2,628,556	-		IAI47_12470	0.14	-2.1
2,628,556	-		IAI47_12470	0.14	-1.3
2,628,576	-		IAI47_12470	0.17	-2.1
2,628,583	-		IAI47_12470	0.18	+0.0
2,628,654	+		IAI47_12470	0.28	-1.7
2,628,654	+		IAI47_12470	0.28	-2.3
2,628,655	-		IAI47_12470	0.29	-2.3
2,628,655	-		IAI47_12470	0.29	-0.2
2,628,655	-		IAI47_12470	0.29	-1.5
2,628,655	-		IAI47_12470	0.29	-2.3
2,628,684	+		IAI47_12470	0.33	-1.9
2,628,684	+		IAI47_12470	0.33	-0.2
2,628,684	+		IAI47_12470	0.33	-2.7
2,628,684	+		IAI47_12470	0.33	-3.2
2,628,685	-		IAI47_12470	0.33	-2.5
2,628,685	-		IAI47_12470	0.33	-2.8
2,628,685	-		IAI47_12470	0.33	+0.3
2,628,685	-		IAI47_12470	0.33	+0.3
2,628,685	-		IAI47_12470	0.33	-1.8
2,628,685	-		IAI47_12470	0.33	-1.9
2,628,685	-		IAI47_12470	0.33	-1.6
2,628,753	+		IAI47_12470	0.43	-1.9
2,628,753	+		IAI47_12470	0.43	-2.5
2,628,753	+		IAI47_12470	0.43	-1.0
2,628,753	+		IAI47_12470	0.43	-1.0
2,628,753	+		IAI47_12470	0.43	-3.3
2,628,753	+		IAI47_12470	0.43	-4.3
2,628,753	+		IAI47_12470	0.43	-2.4
2,628,754	-		IAI47_12470	0.44	-0.5
2,628,754	-		IAI47_12470	0.44	-2.8
2,628,754	-		IAI47_12470	0.44	-0.9
2,628,754	-		IAI47_12470	0.44	-3.3
2,628,754	-		IAI47_12470	0.44	-2.3
2,628,754	-		IAI47_12470	0.44	-2.5
2,628,754	-		IAI47_12470	0.44	-2.7
2,628,754	-		IAI47_12470	0.44	-1.5
2,628,755	+		IAI47_12470	0.44	-1.3
2,628,755	+		IAI47_12470	0.44	-0.7
2,628,755	+		IAI47_12470	0.44	-2.9
2,628,755	+		IAI47_12470	0.44	-2.7
2,628,755	+		IAI47_12470	0.44	-1.3
2,628,755	+		IAI47_12470	0.44	-1.3
2,628,755	+		IAI47_12470	0.44	-1.0
2,628,755	+		IAI47_12470	0.44	-2.2
2,628,755	+		IAI47_12470	0.44	-2.1
2,628,756	-		IAI47_12470	0.44	-2.5
2,628,756	-		IAI47_12470	0.44	-1.3
2,628,756	-		IAI47_12470	0.44	-1.8
2,628,756	-		IAI47_12470	0.44	-1.8
2,628,756	-		IAI47_12470	0.44	-2.3
2,628,816	+		IAI47_12470	0.53	-2.4
2,628,847	-		IAI47_12470	0.58	-1.9
2,628,847	-		IAI47_12470	0.58	-1.3
2,628,847	-		IAI47_12470	0.58	-2.3
2,628,852	+		IAI47_12470	0.58	-0.7
2,628,853	-		IAI47_12470	0.59	-0.5
2,628,873	+		IAI47_12470	0.62	-0.5
2,628,874	-		IAI47_12470	0.62	-1.5
2,628,879	+		IAI47_12470	0.63	-2.5
2,628,879	+		IAI47_12470	0.63	-0.9
2,628,879	+		IAI47_12470	0.63	-2.8
2,628,880	-		IAI47_12470	0.63	-1.0
2,628,880	-		IAI47_12470	0.63	-1.8
2,628,880	-		IAI47_12470	0.63	-1.4
2,628,880	-		IAI47_12470	0.63	-1.0
2,628,888	+		IAI47_12470	0.64	-1.4
2,628,888	+		IAI47_12470	0.64	-2.7
2,628,889	-		IAI47_12470	0.64	-1.7
2,628,911	+		IAI47_12470	0.67	-1.9
2,628,912	-		IAI47_12470	0.68	-2.7
2,628,991	-		IAI47_12470	0.80	-1.3
2,629,005	+		IAI47_12470	0.82	-1.7
2,629,005	+		IAI47_12470	0.82	-2.0
2,629,005	+		IAI47_12470	0.82	-2.1
2,629,005	+		IAI47_12470	0.82	-2.0
2,629,005	+		IAI47_12470	0.82	-0.9
2,629,006	-		IAI47_12470	0.82	-2.5
2,629,053	+		IAI47_12470	0.89	-3.0
2,629,053	+		IAI47_12470	0.89	-2.1
2,629,053	+		IAI47_12470	0.89	-0.9
2,629,053	+		IAI47_12470	0.89	-1.7
2,629,053	+		IAI47_12470	0.89	+0.9
2,629,053	+		IAI47_12470	0.89	-2.3
2,629,054	-		IAI47_12470	0.89	-1.6
2,629,054	-		IAI47_12470	0.89	-3.1
2,629,054	-		IAI47_12470	0.89	-2.6
2,629,084	-				-2.5
2,629,184	+				+0.7
2,629,185	-				-1.1
2,629,195	-				-2.7
2,629,218	+				-0.7
2,629,234	+				+0.9
2,629,235	-				+0.3
2,629,235	-				-2.0
2,629,269	+				-1.0
2,629,269	+				-0.3
2,629,269	+				+0.6
2,629,313	-				-1.4
2,629,313	-				-0.3
2,629,323	+				-0.2
2,629,336	+				+1.4
2,629,336	+				-0.6
2,629,336	+				+0.3
2,629,346	+				+1.7
2,629,346	+				+1.1
2,629,347	-				+0.0
2,629,347	-				+0.7
2,629,349	+				+0.5
2,629,349	+				-0.6
2,629,349	+				+0.3
2,629,350	-				+0.4
2,629,350	-				-0.2
2,629,350	-				+0.2
2,629,377	+				+2.3
2,629,377	+				+0.6
2,629,377	+				+0.3
2,629,378	-				-0.7
2,629,378	-				+0.3
2,629,378	-				-1.5
2,629,378	-				-0.3
2,629,378	-				-1.3
2,629,378	-				-0.0
2,629,378	-				+0.5
2,629,380	+				+0.6
2,629,380	+				-0.2
2,629,405	+				+0.1
2,629,406	-				+0.6
2,629,406	-				+0.6
2,629,422	+				-0.8
2,629,423	-				-0.1
2,629,480	+				+0.3
2,629,480	+				-0.6
2,629,480	+				-1.2
2,629,480	+				-0.3
2,629,480	+				-0.1
2,629,480	+				+0.4
2,629,480	+				-1.1
2,629,480	+				-0.1
2,629,480	+				-0.3
2,629,480	+				+0.3
2,629,481	-				+1.3
2,629,481	-				+0.1
2,629,481	-				+0.3
2,629,494	+				+1.9
2,629,495	-				-0.8
2,629,495	-				-0.9
2,629,495	-				-0.5
2,629,497	-				-1.0
2,629,497	-				+0.9
2,629,497	-				+0.3
2,629,497	-				-0.1
2,629,497	-				+0.5
2,629,497	-				+0.9
2,629,497	-				+1.1
2,629,497	-				+1.7
2,629,497	-				+2.1
2,629,552	+				+0.7
2,629,552	+				+0.3
2,629,552	+				-0.2
2,629,553	-				+1.4
2,629,553	-				+1.3
2,629,553	-				-1.1
2,629,553	-				-0.5
2,629,553	-				+0.9
2,629,553	-				+1.2
2,629,652	+		IAI47_12475	0.42	-1.5
2,629,652	+		IAI47_12475	0.42	-1.1
2,629,652	+		IAI47_12475	0.42	+1.3
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