Strain Fitness in Pantoea sp. MT58 around IAI47_12215

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
2,582,750	+		IAI47_12205	0.72	+0.9
2,582,751	-		IAI47_12205	0.73	+0.3
2,582,799	+		IAI47_12205	0.80	-0.4
2,582,799	+		IAI47_12205	0.80	+0.0
2,582,799	+		IAI47_12205	0.80	-0.6
2,582,799	+		IAI47_12205	0.80	+1.3
2,582,800	-		IAI47_12205	0.80	-0.1
2,582,800	-		IAI47_12205	0.80	+0.4
2,582,880	+				-1.2
2,582,880	+				+0.3
2,582,880	+				+0.3
2,582,881	-				+1.3
2,582,881	-				+0.3
2,582,881	-				-0.4
2,582,881	-				+0.0
2,582,881	-				-0.1
2,582,886	+				-1.5
2,582,886	+				-0.3
2,582,886	+				+0.3
2,582,900	+				-0.9
2,582,900	+				-0.3
2,582,900	+				-1.1
2,582,900	+				+0.2
2,582,901	-				-0.4
2,582,918	+				+1.1
2,582,918	+				+1.5
2,582,918	+				+0.9
2,582,919	-				+0.7
2,582,919	-				+0.0
2,582,919	-				-1.1
2,582,919	-				+0.6
2,582,926	+				-2.1
2,583,003	+				+1.3
2,583,004	-				-1.1
2,583,004	-				+0.9
2,583,004	-				+1.9
2,583,005	+				-0.0
2,583,005	+				-0.4
2,583,005	+				-0.1
2,583,005	+				+0.3
2,583,006	-				+0.3
2,583,006	-				-0.3
2,583,006	-				+0.4
2,583,014	+				+0.8
2,583,015	-				+0.4
2,583,103	+		IAI47_12210	0.10	+0.5
2,583,103	+		IAI47_12210	0.10	+0.3
2,583,103	+		IAI47_12210	0.10	-0.5
2,583,103	+		IAI47_12210	0.10	-0.5
2,583,103	+		IAI47_12210	0.10	+0.3
2,583,104	-		IAI47_12210	0.11	+0.8
2,583,104	-		IAI47_12210	0.11	+0.8
2,583,104	-		IAI47_12210	0.11	-1.1
2,583,104	-		IAI47_12210	0.11	-0.9
2,583,104	-		IAI47_12210	0.11	-0.7
2,583,104	-		IAI47_12210	0.11	+0.1
2,583,104	-		IAI47_12210	0.11	+0.2
2,583,104	-		IAI47_12210	0.11	+0.8
2,583,119	+		IAI47_12210	0.13	+2.6
2,583,120	-		IAI47_12210	0.13	+1.3
2,583,120	-		IAI47_12210	0.13	+0.6
2,583,163	+		IAI47_12210	0.21	-0.9
2,583,164	-		IAI47_12210	0.21	+0.3
2,583,170	+		IAI47_12210	0.22	-0.4
2,583,170	+		IAI47_12210	0.22	-0.5
2,583,170	+		IAI47_12210	0.22	-0.1
2,583,170	+		IAI47_12210	0.22	+1.1
2,583,171	-		IAI47_12210	0.23	-0.3
2,583,171	-		IAI47_12210	0.23	-0.4
2,583,171	-		IAI47_12210	0.23	-0.5
2,583,171	-		IAI47_12210	0.23	+0.3
2,583,211	+		IAI47_12210	0.30	+0.3
2,583,211	+		IAI47_12210	0.30	-0.4
2,583,211	+		IAI47_12210	0.30	-1.0
2,583,211	+		IAI47_12210	0.30	+1.3
2,583,212	-		IAI47_12210	0.30	-0.4
2,583,212	-		IAI47_12210	0.30	-0.1
2,583,212	-		IAI47_12210	0.30	-1.1
2,583,289	+		IAI47_12210	0.43	+0.9
2,583,289	+		IAI47_12210	0.43	+0.6
2,583,290	-		IAI47_12210	0.44	-0.3
2,583,290	-		IAI47_12210	0.44	+2.6
2,583,290	-		IAI47_12210	0.44	-0.7
2,583,325	+		IAI47_12210	0.50	+1.5
2,583,380	+		IAI47_12210	0.60	-0.7
2,583,380	+		IAI47_12210	0.60	+0.3
2,583,381	-		IAI47_12210	0.60	+0.3
2,583,381	-		IAI47_12210	0.60	-0.5
2,583,381	-		IAI47_12210	0.60	-0.5
2,583,381	-		IAI47_12210	0.60	+0.0
2,583,381	-		IAI47_12210	0.60	-0.1
2,583,381	-		IAI47_12210	0.60	+0.5
2,583,406	+		IAI47_12210	0.64	+2.3
2,583,407	-		IAI47_12210	0.64	+0.2
2,583,439	+		IAI47_12210	0.70	+1.2
2,583,439	+		IAI47_12210	0.70	-0.5
2,583,440	-		IAI47_12210	0.70	-0.7
2,583,440	-		IAI47_12210	0.70	+1.2
2,583,440	-		IAI47_12210	0.70	-0.3
2,583,482	+		IAI47_12210	0.78	+0.4
2,583,483	-		IAI47_12210	0.78	+1.0
2,583,483	-		IAI47_12210	0.78	+1.1
2,583,503	+		IAI47_12210	0.81	+0.8
2,583,503	+		IAI47_12210	0.81	-0.8
2,583,503	+		IAI47_12210	0.81	+2.3
2,583,503	+		IAI47_12210	0.81	-1.3
2,583,503	+		IAI47_12210	0.81	+0.1
2,583,503	+		IAI47_12210	0.81	+0.9
2,583,503	+		IAI47_12210	0.81	+0.1
2,583,503	+		IAI47_12210	0.81	-0.1
2,583,503	+		IAI47_12210	0.81	+1.3
2,583,503	+		IAI47_12210	0.81	-0.1
2,583,504	-		IAI47_12210	0.82	-0.5
2,583,504	-		IAI47_12210	0.82	+1.1
2,583,504	-		IAI47_12210	0.82	+0.7
2,583,504	-		IAI47_12210	0.82	-1.3
2,583,504	-		IAI47_12210	0.82	+0.6
2,583,504	-		IAI47_12210	0.82	+0.6
2,583,504	-		IAI47_12210	0.82	-0.2
2,583,504	-		IAI47_12210	0.82	-0.4
2,583,504	-		IAI47_12210	0.82	-0.7
2,583,504	-		IAI47_12210	0.82	+1.3
2,583,507	+		IAI47_12210	0.82	+0.4
2,583,507	+		IAI47_12210	0.82	+0.7
2,583,507	+		IAI47_12210	0.82	-0.1
2,583,507	+		IAI47_12210	0.82	+1.1
2,583,507	+		IAI47_12210	0.82	-0.3
2,583,507	+		IAI47_12210	0.82	+1.5
2,583,508	-		IAI47_12210	0.82	-0.1
2,583,508	-		IAI47_12210	0.82	-0.7
2,583,508	-		IAI47_12210	0.82	+0.7
2,583,508	-		IAI47_12210	0.82	+0.1
2,583,526	+		IAI47_12210	0.85	+0.7
2,583,526	+		IAI47_12210	0.85	+1.6
2,583,527	-		IAI47_12210	0.86	+1.5
2,583,527	-		IAI47_12210	0.86	+0.3
2,583,527	-		IAI47_12210	0.86	-0.1
2,583,605	+				+0.5
2,583,605	+				-1.3
2,583,605	+				+0.9
2,583,625	+				-0.7
2,583,651	+				+0.3
2,583,651	+				-0.6
2,583,684	+				-0.7
2,583,684	+				+0.0
2,583,684	+				-1.4
2,583,684	+				+0.7
2,583,684	+				+0.4
2,583,685	-				+0.6
2,583,685	-				+0.5
2,583,685	-				+0.3
2,583,685	-				+1.1
2,583,685	-				-0.2
2,583,690	+				-1.1
2,583,691	-				-0.7
2,583,691	-				+0.9
2,583,766	-				-4.0
2,583,766	-				-3.6
2,583,766	-				-3.4
2,583,766	-				-3.9
2,583,792	+				-3.2
2,583,792	+				-3.2
2,583,792	+				+0.3
2,583,792	+				-3.6
2,583,792	+				-2.5
2,583,792	+				-2.9
2,583,792	+				-1.3
2,583,792	+				-4.5
2,583,793	-				-2.9
2,583,793	-				-3.2
2,583,793	-				-2.7
2,583,793	-				-2.9
2,583,823	+				-1.1
2,583,835	+				-3.2
2,583,835	+				-2.3
2,583,835	+				-2.5
2,583,837	+				-1.7
2,583,838	-				-3.3
2,583,838	-				-1.3
2,583,838	-				-1.3
2,583,927	+		IAI47_12215	0.18	-2.1
2,583,928	-		IAI47_12215	0.18	-0.7
2,583,928	-		IAI47_12215	0.18	-1.3
2,583,960	+		IAI47_12215	0.21	-1.3
2,583,960	+		IAI47_12215	0.21	-1.7
2,583,979	+		IAI47_12215	0.23	-2.3
2,583,979	+		IAI47_12215	0.23	-3.4
2,583,979	+		IAI47_12215	0.23	-2.5
2,583,979	+		IAI47_12215	0.23	-2.1
2,584,054	+		IAI47_12215	0.30	-1.1
2,584,054	+		IAI47_12215	0.30	-4.2
2,584,054	+		IAI47_12215	0.30	-2.5
2,584,055	-		IAI47_12215	0.30	-3.4
2,584,055	-		IAI47_12215	0.30	-2.5
2,584,055	-		IAI47_12215	0.30	-1.7
2,584,055	-		IAI47_12215	0.30	-1.7
2,584,055	-		IAI47_12215	0.30	-3.1
2,584,129	-		IAI47_12215	0.37	-3.5
2,584,129	-		IAI47_12215	0.37	-4.1
2,584,144	-		IAI47_12215	0.39	-1.3
2,584,151	+				-2.3
2,584,152	-		IAI47_12215	0.39	-2.5
2,584,170	+		IAI47_12215	0.41	-4.1
2,584,189	-		IAI47_12215	0.43	+0.3
2,584,212	+		IAI47_12215	0.45	-2.1
2,584,223	+		IAI47_12215	0.46	-2.5
2,584,224	-		IAI47_12215	0.46	-1.3
2,584,278	+		IAI47_12215	0.51	-2.9
2,584,278	+		IAI47_12215	0.51	-3.1
2,584,278	+		IAI47_12215	0.51	-4.1
2,584,278	+		IAI47_12215	0.51	-1.3
2,584,279	-		IAI47_12215	0.51	-2.5
2,584,300	+		IAI47_12215	0.53	-1.3
2,584,300	+		IAI47_12215	0.53	-0.7
2,584,300	+		IAI47_12215	0.53	-4.9
2,584,301	-		IAI47_12215	0.54	-1.7
2,584,301	-		IAI47_12215	0.54	-2.1
2,584,301	-		IAI47_12215	0.54	-2.9
2,584,371	+		IAI47_12215	0.60	-2.3
2,584,371	+		IAI47_12215	0.60	-4.4
2,584,371	+		IAI47_12215	0.60	-4.0
2,584,371	+		IAI47_12215	0.60	-3.7
2,584,372	-		IAI47_12215	0.60	-1.7
2,584,372	-		IAI47_12215	0.60	-4.0
2,584,372	-		IAI47_12215	0.60	-2.5
2,584,372	-		IAI47_12215	0.60	-1.3
2,584,372	-		IAI47_12215	0.60	-3.5
2,584,372	-		IAI47_12215	0.60	-3.1
2,584,372	-		IAI47_12215	0.60	-3.9
2,584,372	-		IAI47_12215	0.60	-0.7
2,584,372	-		IAI47_12215	0.60	-1.7
2,584,372	-		IAI47_12215	0.60	-1.3
2,584,402	+		IAI47_12215	0.63	-0.7
2,584,402	+		IAI47_12215	0.63	-2.1
2,584,403	-		IAI47_12215	0.63	-2.3
2,584,403	-		IAI47_12215	0.63	-3.8
2,584,403	-		IAI47_12215	0.63	-2.9
2,584,419	+		IAI47_12215	0.65	-2.9
2,584,449	+		IAI47_12215	0.68	-3.4
2,584,450	-		IAI47_12215	0.68	-3.6
2,584,450	-		IAI47_12215	0.68	-0.7
2,584,450	-		IAI47_12215	0.68	-3.1
2,584,457	+		IAI47_12215	0.68	+0.3
2,584,457	+		IAI47_12215	0.68	-2.7
2,584,458	-		IAI47_12215	0.69	-2.7
2,584,458	-		IAI47_12215	0.69	-2.9
2,584,551	+		IAI47_12215	0.77	-2.9
2,584,551	+		IAI47_12215	0.77	-2.1
2,584,551	+		IAI47_12215	0.77	-3.1
2,584,552	-		IAI47_12215	0.78	-2.7
2,584,552	-		IAI47_12215	0.78	-1.7
2,584,576	+		IAI47_12215	0.80	-2.7
2,584,652	-		IAI47_12215	0.87	-3.3
2,584,680	+		IAI47_12215	0.90	-2.7
2,584,681	-				-2.3
2,584,681	-				-3.2
2,584,790	-				-0.5
2,584,790	-				-1.3
2,584,844	+				-0.3
2,584,844	+				-0.8
2,584,844	+				+0.9
2,584,845	-				+0.1
2,584,847	+				-0.1
2,584,847	+				-0.1
2,584,848	-				-1.5
2,584,848	-				+2.3
2,584,848	-				+0.4
2,584,848	-				-0.2
2,584,862	+				+0.6
2,584,863	-				-1.7
2,584,922	-		IAI47_12220	0.30	+0.7
2,584,972	+		IAI47_12220	0.50	-0.7
2,584,972	+		IAI47_12220	0.50	-0.3
2,584,972	+		IAI47_12220	0.50	-0.1
2,584,973	-		IAI47_12220	0.51	+0.0
2,584,973	-		IAI47_12220	0.51	+1.3
2,584,973	-		IAI47_12220	0.51	+1.3
2,584,973	-		IAI47_12220	0.51	-1.2
2,584,973	-		IAI47_12220	0.51	+1.3
2,584,991	+		IAI47_12220	0.58	+0.1
2,584,992	-		IAI47_12220	0.59	-0.4
2,584,992	-		IAI47_12220	0.59	-0.6
2,585,084	+				-0.7
2,585,085	-				+0.5
2,585,085	-				+2.1
2,585,137	+				-1.1
2,585,176	+				-2.7
2,585,176	+				+0.5
2,585,176	+				+1.6
2,585,177	-				+0.7
2,585,185	-				-0.3
2,585,185	-				+0.3
2,585,199	+				+1.2
2,585,221	-				-0.1
2,585,243	+				+0.7
2,585,243	+				+0.1
2,585,244	-				+2.3
2,585,249	+				-0.5
2,585,249	+				+1.3
2,585,250	-				-1.1
2,585,281	+		IAI47_12225	0.16	-0.7
2,585,281	+		IAI47_12225	0.16	-1.0
2,585,281	+		IAI47_12225	0.16	+0.6
2,585,281	+		IAI47_12225	0.16	+0.1
2,585,282	-		IAI47_12225	0.16	-0.0
2,585,282	-		IAI47_12225	0.16	+0.2
2,585,282	-		IAI47_12225	0.16	+0.3
2,585,282	-		IAI47_12225	0.16	-1.5
2,585,282	-		IAI47_12225	0.16	-0.5
2,585,284	+		IAI47_12225	0.17	-0.1
2,585,284	+		IAI47_12225	0.17	+2.1
2,585,284	+		IAI47_12225	0.17	-0.2
2,585,284	+		IAI47_12225	0.17	+1.6
2,585,285	-		IAI47_12225	0.17	-0.6
2,585,508	+				-1.1
2,585,509	-				+1.7
2,585,509	-				-0.1
2,585,509	-				+0.3
2,585,509	-				+0.6
2,585,509	-				-1.1
2,585,509	-				+0.1
2,585,522	+				-1.2
2,585,522	+				-1.3
2,585,522	+				+0.4
2,585,523	-				-0.9
2,585,523	-				+0.3
2,585,553	+				-0.7
2,585,553	+				-0.1
2,585,554	-				+0.3
2,585,560	+				+0.3
2,585,560	+				+0.4
2,585,560	+				+0.1
2,585,561	-				+0.8
2,585,616	+				+0.7
2,585,616	+				-0.3
2,585,616	+				+2.3
2,585,616	+				-0.3
2,585,647	+				+0.3
2,585,668	+				-1.0
2,585,676	+				-0.7
2,585,677	-				-2.3
2,585,677	-				+1.9
2,585,680	-				+0.9
2,585,680	-				+1.0
2,585,680	-				+0.6
2,585,680	-				-0.3
2,585,697	-				-0.7
2,585,697	-				-0.3
2,585,733	+				-0.3
2,585,734	-				-0.4
2,585,734	-				-0.1
2,585,740	+				-1.1
2,585,740	+				+0.8
2,585,740	+				-0.7
2,585,740	+				-0.9
2,585,740	+				-0.3
2,585,740	+				+2.6
2,585,741	-				+0.3
2,585,741	-				-0.1
2,585,743	+				+0.0
2,585,743	+				-0.9
2,585,743	+				+1.3
2,585,744	-				-0.7
2,585,744	-				-0.7
2,585,744	-				-0.5
2,585,752	+				+1.3
2,585,752	+				-0.2
2,585,752	+				-1.3
2,585,752	+				-0.4
2,585,753	-				-1.5
2,585,753	-				-0.1
2,585,754	+				-1.2
2,585,754	+				-2.1
2,585,754	+				-1.0
2,585,754	+				-1.0
2,585,754	+				-0.3
2,585,754	+				+0.3
2,585,755	-				-0.3
2,585,755	-				-0.1
2,585,755	-				-1.7
2,585,776	+				+0.3