Strain Fitness in Pantoea sp. MT58 around IAI47_11090

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
2,336,243	+		IAI47_11085	0.33	-2.4
2,336,243	+		IAI47_11085	0.33	-2.8
2,336,243	+		IAI47_11085	0.33	-2.1
2,336,243	+		IAI47_11085	0.33	-2.4
2,336,243	+		IAI47_11085	0.33	-3.5
2,336,244	-		IAI47_11085	0.33	-1.8
2,336,244	-		IAI47_11085	0.33	-3.6
2,336,244	-		IAI47_11085	0.33	-1.4
2,336,244	-		IAI47_11085	0.33	-0.8
2,336,244	-		IAI47_11085	0.33	-3.6
2,336,244	-		IAI47_11085	0.33	-3.2
2,336,245	+		IAI47_11085	0.33	-2.1
2,336,245	+		IAI47_11085	0.33	-4.2
2,336,246	-		IAI47_11085	0.33	-1.8
2,336,246	-		IAI47_11085	0.33	-1.6
2,336,267	-		IAI47_11085	0.35	-2.1
2,336,381	-		IAI47_11085	0.43	-2.4
2,336,423	-		IAI47_11085	0.46	-0.8
2,336,423	-		IAI47_11085	0.46	-3.2
2,336,423	-		IAI47_11085	0.46	-0.8
2,336,425	+		IAI47_11085	0.46	-3.4
2,336,425	+		IAI47_11085	0.46	-1.4
2,336,425	+		IAI47_11085	0.46	-3.6
2,336,426	-		IAI47_11085	0.46	-3.8
2,336,426	-		IAI47_11085	0.46	-3.6
2,336,426	-		IAI47_11085	0.46	-3.1
2,336,443	+		IAI47_11085	0.47	-2.1
2,336,443	+		IAI47_11085	0.47	-2.6
2,336,444	-		IAI47_11085	0.47	-4.1
2,336,444	-		IAI47_11085	0.47	-1.4
2,336,444	-		IAI47_11085	0.47	+0.2
2,336,446	+		IAI47_11085	0.47	-2.6
2,336,447	-		IAI47_11085	0.47	-3.4
2,336,484	-		IAI47_11085	0.50	-0.8
2,336,484	-		IAI47_11085	0.50	-4.0
2,336,560	-		IAI47_11085	0.55	-1.8
2,336,657	+		IAI47_11085	0.61	-2.8
2,336,658	-		IAI47_11085	0.61	-3.5
2,336,658	-		IAI47_11085	0.61	-2.6
2,336,734	+		IAI47_11085	0.67	-0.4
2,336,734	+		IAI47_11085	0.67	-3.1
2,336,735	-		IAI47_11085	0.67	-1.8
2,336,735	-		IAI47_11085	0.67	-1.4
2,336,774	-		IAI47_11085	0.69	-1.4
2,336,774	-		IAI47_11085	0.69	+0.2
2,336,806	-		IAI47_11085	0.72	-2.8
2,336,806	-		IAI47_11085	0.72	-2.8
2,336,806	-		IAI47_11085	0.72	-2.9
2,336,806	-		IAI47_11085	0.72	-2.6
2,336,806	-		IAI47_11085	0.72	-0.8
2,336,806	-		IAI47_11085	0.72	-0.8
2,336,817	-		IAI47_11085	0.72	-2.8
2,336,889	+		IAI47_11085	0.77	-3.9
2,336,889	+		IAI47_11085	0.77	-2.4
2,336,889	+		IAI47_11085	0.77	-2.9
2,336,889	+		IAI47_11085	0.77	-3.9
2,336,890	-		IAI47_11085	0.77	-1.1
2,337,031	+		IAI47_11085	0.87	-3.8
2,337,032	-		IAI47_11085	0.87	-4.1
2,337,141	-				-3.2
2,337,141	-				-2.4
2,337,195	-				-1.4
2,337,253	+				-1.2
2,337,365	+		IAI47_11090	0.14	-0.5
2,337,366	-		IAI47_11090	0.14	-0.1
2,337,372	+		IAI47_11090	0.15	-1.8
2,337,372	+		IAI47_11090	0.15	-2.1
2,337,372	+		IAI47_11090	0.15	-1.9
2,337,373	-		IAI47_11090	0.15	-1.1
2,337,375	+		IAI47_11090	0.15	-1.4
2,337,375	+		IAI47_11090	0.15	+0.6
2,337,375	+		IAI47_11090	0.15	-0.8
2,337,376	-		IAI47_11090	0.15	-2.6
2,337,376	-		IAI47_11090	0.15	-3.1
2,337,376	-		IAI47_11090	0.15	+0.2
2,337,441	+		IAI47_11090	0.21	-1.8
2,337,441	+		IAI47_11090	0.21	-0.4
2,337,441	+		IAI47_11090	0.21	-1.6
2,337,441	+		IAI47_11090	0.21	-1.6
2,337,442	-		IAI47_11090	0.22	-1.9
2,337,506	+		IAI47_11090	0.28	-0.8
2,337,506	+		IAI47_11090	0.28	-1.4
2,337,506	+		IAI47_11090	0.28	-2.0
2,337,506	+		IAI47_11090	0.28	-2.3
2,337,506	+		IAI47_11090	0.28	-1.6
2,337,506	+		IAI47_11090	0.28	-1.4
2,337,506	+		IAI47_11090	0.28	-2.1
2,337,506	+		IAI47_11090	0.28	-2.6
2,337,506	+		IAI47_11090	0.28	-2.3
2,337,507	-		IAI47_11090	0.28	-1.2
2,337,507	-		IAI47_11090	0.28	-0.4
2,337,507	-		IAI47_11090	0.28	-1.4
2,337,507	-		IAI47_11090	0.28	-0.8
2,337,507	-		IAI47_11090	0.28	-3.1
2,337,507	-		IAI47_11090	0.28	-1.4
2,337,510	+		IAI47_11090	0.28	-1.8
2,337,510	+		IAI47_11090	0.28	-0.8
2,337,511	-		IAI47_11090	0.28	-0.9
2,337,511	-		IAI47_11090	0.28	-2.0
2,337,511	-		IAI47_11090	0.28	-0.8
2,337,511	-		IAI47_11090	0.28	-2.2
2,337,511	-		IAI47_11090	0.28	-2.4
2,337,511	-		IAI47_11090	0.28	-1.4
2,337,511	-		IAI47_11090	0.28	-0.4
2,337,511	-		IAI47_11090	0.28	-2.0
2,337,511	-		IAI47_11090	0.28	-1.5
2,337,606	-		IAI47_11090	0.37	-1.8
2,337,606	-		IAI47_11090	0.37	-2.1
2,337,606	-		IAI47_11090	0.37	-0.8
2,337,606	-		IAI47_11090	0.37	-1.9
2,337,612	+		IAI47_11090	0.38	-2.4
2,337,612	+		IAI47_11090	0.38	-2.9
2,337,612	+		IAI47_11090	0.38	-1.8
2,337,612	+		IAI47_11090	0.38	+0.6
2,337,612	+		IAI47_11090	0.38	-1.4
2,337,612	+		IAI47_11090	0.38	-0.9
2,337,613	-		IAI47_11090	0.38	-1.8
2,337,613	-		IAI47_11090	0.38	-1.8
2,337,613	-				-0.6
2,337,614	+		IAI47_11090	0.38	-1.4
2,337,614	+		IAI47_11090	0.38	-2.1
2,337,614	+		IAI47_11090	0.38	-0.8
2,337,614	+		IAI47_11090	0.38	-1.2
2,337,614	+		IAI47_11090	0.38	-0.1
2,337,614	+		IAI47_11090	0.38	-1.0
2,337,614	+		IAI47_11090	0.38	-1.8
2,337,614	+		IAI47_11090	0.38	-0.8
2,337,614	+		IAI47_11090	0.38	-2.8
2,337,614	-		IAI47_11090	0.38	+0.2
2,337,615	-		IAI47_11090	0.38	-1.8
2,337,615	-		IAI47_11090	0.38	-0.8
2,337,615	-		IAI47_11090	0.38	-0.5
2,337,645	+		IAI47_11090	0.41	-3.1
2,337,772	+		IAI47_11090	0.53	-0.4
2,337,773	-		IAI47_11090	0.54	-0.4
2,337,805	-		IAI47_11090	0.57	-0.8
2,337,805	-		IAI47_11090	0.57	-2.5
2,337,839	+		IAI47_11090	0.60	-2.1
2,337,877	+		IAI47_11090	0.64	-1.8
2,337,877	+		IAI47_11090	0.64	-2.8
2,337,877	+		IAI47_11090	0.64	-1.4
2,337,877	+		IAI47_11090	0.64	-2.4
2,337,912	+		IAI47_11090	0.67	-0.9
2,337,912	+		IAI47_11090	0.67	-0.5
2,337,913	-		IAI47_11090	0.67	+0.9
2,337,913	-		IAI47_11090	0.67	-1.1
2,337,941	+		IAI47_11090	0.70	-2.8
2,337,942	-		IAI47_11090	0.70	-1.9
2,337,942	-		IAI47_11090	0.70	-0.8
2,337,991	-		IAI47_11090	0.75	-1.9
2,337,991	-		IAI47_11090	0.75	+0.6
2,337,991	-		IAI47_11090	0.75	-0.8
2,337,992	+		IAI47_11090	0.75	-3.6
2,338,050	+		IAI47_11090	0.80	-0.8
2,338,051	-		IAI47_11090	0.81	-2.6
2,338,079	+		IAI47_11090	0.83	-1.8
2,338,080	-		IAI47_11090	0.83	-1.8
2,338,080	-		IAI47_11090	0.83	-1.1
2,338,080	-		IAI47_11090	0.83	-1.9
2,338,134	+		IAI47_11090	0.89	-1.1
2,338,135	-		IAI47_11090	0.89	-3.4
2,338,144	+		IAI47_11090	0.90	-0.8
2,338,144	+		IAI47_11090	0.90	-2.6
2,338,144	+		IAI47_11090	0.90	-3.4
2,338,144	+		IAI47_11090	0.90	-2.8
2,338,216	+				-1.8
2,338,216	+				-1.1
2,338,216	+				-3.2
2,338,217	-				-3.3
2,338,217	-				-1.4
2,338,217	-				-1.6
2,338,243	+				-1.0
2,338,243	+				-0.9
2,338,243	+				-0.9
2,338,244	-				-1.7
2,338,244	-				+0.2
2,338,244	-				+0.8
2,338,328	+				-1.1
2,338,328	+				-0.9
2,338,443	+		IAI47_11095	0.16	-2.1
2,338,624	+		IAI47_11095	0.31	-1.6
2,338,625	-		IAI47_11095	0.31	-3.4
2,338,625	-		IAI47_11095	0.31	-0.2
2,338,625	-		IAI47_11095	0.31	-1.6
2,338,625	-		IAI47_11095	0.31	-0.1
2,338,716	-		IAI47_11095	0.38	-1.9
2,338,728	+		IAI47_11095	0.39	-1.9
2,338,728	+		IAI47_11095	0.39	-2.6
2,338,728	+		IAI47_11095	0.39	+0.2
2,338,728	+		IAI47_11095	0.39	-2.5
2,338,729	-		IAI47_11095	0.39	-0.9
2,338,729	-		IAI47_11095	0.39	-1.1
2,338,729	-		IAI47_11095	0.39	-1.4
2,338,747	+		IAI47_11095	0.41	-2.6
2,338,747	+		IAI47_11095	0.41	-1.8
2,338,747	+		IAI47_11095	0.41	-0.4
2,338,747	+		IAI47_11095	0.41	-1.1
2,338,748	-		IAI47_11095	0.41	-0.7
2,338,748	-		IAI47_11095	0.41	-0.4
2,338,748	-		IAI47_11095	0.41	-0.8
2,338,748	-		IAI47_11095	0.41	+0.5
2,338,748	-		IAI47_11095	0.41	-0.4
2,338,748	-		IAI47_11095	0.41	-1.3
2,338,756	+		IAI47_11095	0.42	-1.0
2,338,756	+		IAI47_11095	0.42	-1.6
2,338,757	-		IAI47_11095	0.42	-1.6
2,338,757	-		IAI47_11095	0.42	-0.0
2,338,763	-		IAI47_11095	0.42	-1.0
2,338,763	-		IAI47_11095	0.42	-0.7
2,338,826	+		IAI47_11095	0.47	-3.0
2,338,826	+		IAI47_11095	0.47	-1.6
2,338,826	+		IAI47_11095	0.47	-1.5
2,338,827	-		IAI47_11095	0.47	-2.1
2,338,827	-		IAI47_11095	0.47	-1.6
2,338,827	-		IAI47_11095	0.47	-2.4
2,338,928	+		IAI47_11095	0.56	-0.9
2,338,929	-		IAI47_11095	0.56	-0.8
2,338,929	-		IAI47_11095	0.56	-0.8
2,338,958	+		IAI47_11095	0.58	+0.2
2,338,958	+		IAI47_11095	0.58	-2.3
2,338,958	+		IAI47_11095	0.58	-1.8
2,338,958	+		IAI47_11095	0.58	-0.2
2,338,959	-		IAI47_11095	0.58	-0.3
2,338,959	-		IAI47_11095	0.58	+0.2
2,339,008	+		IAI47_11095	0.62	+0.2
2,339,036	+		IAI47_11095	0.65	-3.4
2,339,036	+				-0.6
2,339,037	-		IAI47_11095	0.65	-0.0
2,339,037	-		IAI47_11095	0.65	-1.6
2,339,078	+		IAI47_11095	0.68	-1.1
2,339,079	-		IAI47_11095	0.68	-0.4
2,339,087	+		IAI47_11095	0.69	-2.8
2,339,088	-		IAI47_11095	0.69	-0.5
2,339,117	+		IAI47_11095	0.71	-2.0
2,339,162	+		IAI47_11095	0.75	-2.2
2,339,162	+		IAI47_11095	0.75	-2.1
2,339,163	-		IAI47_11095	0.75	-1.5
2,339,163	-		IAI47_11095	0.75	-2.1
2,339,163	-		IAI47_11095	0.75	-0.8
2,339,199	+		IAI47_11095	0.78	-2.9
2,339,200	-		IAI47_11095	0.78	+0.8
2,339,200	-		IAI47_11095	0.78	-1.1
2,339,237	-		IAI47_11095	0.81	-0.4
2,339,237	-		IAI47_11095	0.81	+0.7
2,339,237	-		IAI47_11095	0.81	-0.6