Strain Fitness in Pantoea sp. MT58 around IAI47_11075

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
2,332,451	+				+0.4
2,332,452	-				+1.0
2,332,485	+				+0.3
2,332,485	+				-0.4
2,332,486	-				+0.8
2,332,486	-				-0.8
2,332,490	+				+0.4
2,332,491	-				+0.6
2,332,578	+				+1.6
2,332,579	-				+1.6
2,332,579	-				+0.6
2,332,581	+				+0.2
2,332,581	+				+0.4
2,332,582	-				-0.3
2,332,662	+		IAI47_11070	0.17	+0.6
2,332,693	+		IAI47_11070	0.23	+1.8
2,332,694	-		IAI47_11070	0.23	+0.8
2,332,695	+		IAI47_11070	0.23	+0.2
2,332,696	-		IAI47_11070	0.23	+0.9
2,332,696	-		IAI47_11070	0.23	-0.4
2,332,696	-		IAI47_11070	0.23	-0.4
2,332,696	-		IAI47_11070	0.23	+0.4
2,332,804	+		IAI47_11070	0.45	-0.6
2,332,804	+		IAI47_11070	0.45	-0.4
2,332,804	+		IAI47_11070	0.45	-0.0
2,332,804	+		IAI47_11070	0.45	+1.1
2,332,805	-		IAI47_11070	0.45	-1.1
2,332,805	-		IAI47_11070	0.45	+0.8
2,332,918	+		IAI47_11070	0.68	-1.0
2,332,918	+		IAI47_11070	0.68	+0.1
2,332,918	+		IAI47_11070	0.68	-0.2
2,332,919	-		IAI47_11070	0.68	-0.0
2,332,919	-		IAI47_11070	0.68	-0.8
2,332,997	-		IAI47_11070	0.84	-0.0
2,332,997	-		IAI47_11070	0.84	-1.2
2,333,074	+				+0.0
2,333,074	+				+0.4
2,333,074	+				+0.2
2,333,074	+				-1.4
2,333,074	+				+0.5
2,333,077	+				+3.0
2,333,077	+				+1.4
2,333,077	+				+0.2
2,333,078	-				+0.9
2,333,078	-				-1.0
2,333,078	-				+0.2
2,333,078	-				-0.3
2,333,078	-				+0.3
2,333,086	+				-0.3
2,333,086	+				-1.1
2,333,086	+				+0.0
2,333,086	+				+0.8
2,333,086	+				+0.9
2,333,087	-				-0.6
2,333,087	-				+1.6
2,333,087	-				+0.0
2,333,087	-				+0.0
2,333,088	+				+2.2
2,333,088	+				-1.8
2,333,088	+				-1.0
2,333,089	-				-0.8
2,333,089	-				+0.2
2,333,098	+				-0.8
2,333,098	+				-0.3
2,333,099	-				-0.8
2,333,099	-				+0.4
2,333,138	+				+0.2
2,333,138	+				+0.3
2,333,138	+				+0.2
2,333,138	+				-0.4
2,333,138	+				+0.6
2,333,138	+				+1.6
2,333,138	+				+1.1
2,333,138	+				+0.1
2,333,139	-				-1.0
2,333,139	-				-1.5
2,333,139	-				-0.5
2,333,157	+				-0.2
2,333,158	-				-0.8
2,333,172	+				-0.5
2,333,188	+				-0.1
2,333,196	-				+0.1
2,333,221	+				+1.0
2,333,295	-				+0.9
2,333,371	+				+1.2
2,333,372	-				-0.3
2,333,477	+				-0.8
2,333,477	+				-2.4
2,333,477	+				-2.9
2,333,477	+				-2.6
2,333,477	+				-4.2
2,333,478	-				-1.8
2,333,478	-				-2.6
2,333,478	-				-3.1
2,333,498	+		IAI47_11075	0.12	-3.8
2,333,498	+		IAI47_11075	0.12	-1.8
2,333,499	-		IAI47_11075	0.12	-3.1
2,333,499	-		IAI47_11075	0.12	-3.5
2,333,501	+		IAI47_11075	0.12	-2.9
2,333,508	+		IAI47_11075	0.13	-1.8
2,333,508	+		IAI47_11075	0.13	-2.8
2,333,508	+		IAI47_11075	0.13	-1.8
2,333,509	-		IAI47_11075	0.13	-1.8
2,333,509	-		IAI47_11075	0.13	-1.8
2,333,509	-		IAI47_11075	0.13	-2.9
2,333,509	-		IAI47_11075	0.13	-4.2
2,333,511	+		IAI47_11075	0.13	-3.2
2,333,511	+		IAI47_11075	0.13	-2.9
2,333,511	+		IAI47_11075	0.13	-2.6
2,333,511	+		IAI47_11075	0.13	-3.1
2,333,511	+		IAI47_11075	0.13	-1.4
2,333,512	-		IAI47_11075	0.13	+0.2
2,333,512	-		IAI47_11075	0.13	-3.1
2,333,512	-		IAI47_11075	0.13	-2.8
2,333,512	-		IAI47_11075	0.13	-1.8
2,333,512	-		IAI47_11075	0.13	-2.1
2,333,512	-		IAI47_11075	0.13	-3.2
2,333,512	-		IAI47_11075	0.13	-2.8
2,333,512	-		IAI47_11075	0.13	-2.1
2,333,550	+		IAI47_11075	0.17	-1.6
2,333,574	+		IAI47_11075	0.19	-0.8
2,333,574	+		IAI47_11075	0.19	-1.4
2,333,574	+		IAI47_11075	0.19	-3.4
2,333,574	+		IAI47_11075	0.19	-0.8
2,333,574	+		IAI47_11075	0.19	-2.6
2,333,574	+		IAI47_11075	0.19	-3.9
2,333,575	-		IAI47_11075	0.19	-1.8
2,333,575	-		IAI47_11075	0.19	-3.5
2,333,575	-		IAI47_11075	0.19	-2.6
2,333,575	-		IAI47_11075	0.19	-0.8
2,333,575	-		IAI47_11075	0.19	-1.8
2,333,575	-		IAI47_11075	0.19	-1.4
2,333,575	-		IAI47_11075	0.19	-1.9
2,333,575	-		IAI47_11075	0.19	-0.8
2,333,583	+		IAI47_11075	0.20	-4.2
2,333,583	+		IAI47_11075	0.20	-4.2
2,333,583	+		IAI47_11075	0.20	-2.8
2,333,583	+		IAI47_11075	0.20	-5.3
2,333,584	-		IAI47_11075	0.20	-2.4
2,333,584	-		IAI47_11075	0.20	-2.1
2,333,584	-		IAI47_11075	0.20	-2.8
2,333,667	-		IAI47_11075	0.29	-2.6
2,333,667	-		IAI47_11075	0.29	-1.8
2,333,799	+		IAI47_11075	0.42	-3.6
2,333,800	-		IAI47_11075	0.42	-3.1
2,333,915	+		IAI47_11075	0.53	-0.8
2,333,915	+		IAI47_11075	0.53	-3.2
2,333,915	+		IAI47_11075	0.53	-2.7
2,333,915	+		IAI47_11075	0.53	-2.6
2,333,916	-		IAI47_11075	0.54	-3.1
2,333,916	-		IAI47_11075	0.54	-2.8
2,333,916	-		IAI47_11075	0.54	-2.4
2,333,916	-		IAI47_11075	0.54	-2.0
2,333,916	-		IAI47_11075	0.54	-2.1
2,333,916	-		IAI47_11075	0.54	-2.2
2,333,916	-		IAI47_11075	0.54	-2.6
2,334,064	+		IAI47_11075	0.68	+0.2
2,334,081	-		IAI47_11075	0.70	-2.6
2,334,081	-		IAI47_11075	0.70	-2.4
2,334,081	-		IAI47_11075	0.70	-1.4
2,334,090	-		IAI47_11075	0.71	-4.3
2,334,090	-		IAI47_11075	0.71	-2.9
2,334,096	+		IAI47_11075	0.72	-3.7
2,334,121	-		IAI47_11075	0.74	-1.4
2,334,121	-		IAI47_11075	0.74	-0.8
2,334,148	+		IAI47_11075	0.77	-3.9
2,334,148	+		IAI47_11075	0.77	-2.1
2,334,177	+		IAI47_11075	0.80	-4.4
2,334,190	+		IAI47_11075	0.81	-2.8
2,334,200	-		IAI47_11075	0.82	-4.3
2,334,280	+				-4.2
2,334,281	-				-0.8
2,334,281	-				-3.1
2,334,281	-				-2.8
2,334,290	+				-1.8
2,334,290	+				-1.8
2,334,290	+				-3.1
2,334,290	+				-2.6
2,334,290	+				-2.1
2,334,290	+				-3.8
2,334,290	+				-4.3
2,334,290	+				-2.6
2,334,291	-				-1.1
2,334,291	-				-1.1
2,334,291	-				-3.1
2,334,291	-				-1.8
2,334,327	+				-3.6
2,334,328	-				-3.6
2,334,328	-				-3.5
2,334,445	+				-2.5
2,334,446	-				-0.8
2,334,457	-				-0.8
2,334,457	-				+2.3
2,334,457	-				-0.5
2,334,462	+				-0.0
2,334,462	+				-0.0
2,334,550	+				-0.3
2,334,569	+		IAI47_11080	0.11	-0.4
2,334,569	+		IAI47_11080	0.11	-1.2
2,334,569	+		IAI47_11080	0.11	+0.6
2,334,569	+		IAI47_11080	0.11	-0.8
2,334,569	+		IAI47_11080	0.11	-1.2
2,334,570	-		IAI47_11080	0.11	-0.1
2,334,570	-				+0.6
2,334,570	-		IAI47_11080	0.11	+0.2
2,334,570	-		IAI47_11080	0.11	+0.4
2,334,681	-		IAI47_11080	0.19	+3.5
2,334,682	+		IAI47_11080	0.19	+1.0
2,334,682	+		IAI47_11080	0.19	-1.0
2,334,682	+		IAI47_11080	0.19	-0.5
2,334,682	+		IAI47_11080	0.19	-1.0
2,334,682	+		IAI47_11080	0.19	+0.2
2,334,683	-		IAI47_11080	0.19	+0.6
2,334,683	-		IAI47_11080	0.19	-0.9
2,334,683	-		IAI47_11080	0.19	+1.5
2,334,683	-		IAI47_11080	0.19	+1.2
2,334,729	-		IAI47_11080	0.23	+0.8
2,334,755	-		IAI47_11080	0.25	+1.2
2,334,839	+		IAI47_11080	0.31	+0.1
2,334,839	+		IAI47_11080	0.31	+0.2
2,334,847	+		IAI47_11080	0.31	+0.5
2,334,847	+		IAI47_11080	0.31	-0.5
2,334,847	+		IAI47_11080	0.31	-0.4
2,334,847	+		IAI47_11080	0.31	-0.1
2,334,847	+		IAI47_11080	0.31	-0.9
2,334,847	+		IAI47_11080	0.31	-0.8
2,334,847	+		IAI47_11080	0.31	+0.2
2,334,847	+		IAI47_11080	0.31	-0.6
2,334,847	+		IAI47_11080	0.31	-1.4
2,334,848	-		IAI47_11080	0.32	+1.6
2,334,848	-		IAI47_11080	0.32	+1.2
2,334,848	-		IAI47_11080	0.32	-1.8
2,334,848	-		IAI47_11080	0.32	-0.4
2,334,848	-		IAI47_11080	0.32	+0.2
2,334,848	-		IAI47_11080	0.32	+1.1
2,334,848	-		IAI47_11080	0.32	-0.4
2,334,848	-		IAI47_11080	0.32	-0.2
2,334,848	-		IAI47_11080	0.32	-0.2
2,334,848	-		IAI47_11080	0.32	+0.9
2,334,848	-		IAI47_11080	0.32	+0.1
2,334,848	-		IAI47_11080	0.32	-0.4
2,334,990	-		IAI47_11080	0.42	+0.2
2,335,011	-		IAI47_11080	0.44	+1.8
2,335,011	-		IAI47_11080	0.44	-0.5
2,335,011	-		IAI47_11080	0.44	+0.6
2,335,011	-		IAI47_11080	0.44	+0.2
2,335,011	-		IAI47_11080	0.44	+0.9
2,335,017	+		IAI47_11080	0.44	+1.6
2,335,017	+		IAI47_11080	0.44	-1.6
2,335,017	+		IAI47_11080	0.44	+0.2
2,335,017	+		IAI47_11080	0.44	-0.0
2,335,018	-		IAI47_11080	0.44	+2.2
2,335,059	+		IAI47_11080	0.47	-0.4
2,335,059	+		IAI47_11080	0.47	+0.2
2,335,171	+		IAI47_11080	0.56	+0.8
2,335,171	+		IAI47_11080	0.56	-0.8
2,335,171	+		IAI47_11080	0.56	-0.5
2,335,202	-		IAI47_11080	0.58	-1.5
2,335,338	+		IAI47_11080	0.68	-0.8
2,335,339	-		IAI47_11080	0.68	+0.2