Strain Fitness in Pantoea sp. MT58 around IAI47_11010

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
2,321,457	+		IAI47_11000	0.66	+0.0
2,321,506	+		IAI47_11000	0.71	+2.6
2,321,532	-		IAI47_11000	0.74	+0.7
2,321,540	+		IAI47_11000	0.75	-0.1
2,321,540	+		IAI47_11000	0.75	+0.2
2,321,540	+		IAI47_11000	0.75	-1.0
2,321,540	+		IAI47_11000	0.75	-0.1
2,321,540	+		IAI47_11000	0.75	+0.0
2,321,540	+		IAI47_11000	0.75	+0.0
2,321,540	+		IAI47_11000	0.75	+0.2
2,321,540	+		IAI47_11000	0.75	-1.4
2,321,541	-		IAI47_11000	0.75	-0.8
2,321,541	-		IAI47_11000	0.75	+0.6
2,321,541	-		IAI47_11000	0.75	+0.8
2,321,541	-		IAI47_11000	0.75	+0.7
2,321,541	-		IAI47_11000	0.75	-2.2
2,321,541	-		IAI47_11000	0.75	+0.4
2,321,541	-		IAI47_11000	0.75	-1.0
2,321,541	-		IAI47_11000	0.75	+0.8
2,321,632	+		IAI47_11000	0.86	-0.6
2,321,641	+		IAI47_11000	0.87	-0.4
2,321,641	+		IAI47_11000	0.87	-1.8
2,321,641	+		IAI47_11000	0.87	+0.7
2,321,641	+		IAI47_11000	0.87	-1.1
2,321,641	+		IAI47_11000	0.87	+1.2
2,321,641	+		IAI47_11000	0.87	-1.9
2,321,642	-		IAI47_11000	0.87	+1.7
2,321,642	-		IAI47_11000	0.87	+0.1
2,321,642	-		IAI47_11000	0.87	-0.4
2,321,642	-		IAI47_11000	0.87	-0.9
2,321,644	+		IAI47_11000	0.87	-0.5
2,321,644	+		IAI47_11000	0.87	+0.1
2,321,645	-		IAI47_11000	0.87	+0.0
2,321,704	-				+0.6
2,321,804	+				+1.6
2,321,804	+				-0.8
2,321,837	+		IAI47_11005	0.12	+0.2
2,321,837	+		IAI47_11005	0.12	-1.8
2,321,837	+		IAI47_11005	0.12	-0.1
2,321,838	-		IAI47_11005	0.12	-0.0
2,321,838	-		IAI47_11005	0.12	+0.4
2,321,838	-		IAI47_11005	0.12	-1.4
2,321,838	-		IAI47_11005	0.12	+2.8
2,321,964	+		IAI47_11005	0.36	+0.5
2,321,965	-		IAI47_11005	0.36	+1.0
2,322,035	+		IAI47_11005	0.49	+0.2
2,322,035	+		IAI47_11005	0.49	+3.1
2,322,035	+		IAI47_11005	0.49	-0.8
2,322,035	+		IAI47_11005	0.49	+1.6
2,322,036	-		IAI47_11005	0.49	+1.5
2,322,036	-		IAI47_11005	0.49	+0.2
2,322,036	-		IAI47_11005	0.49	+0.2
2,322,067	+		IAI47_11005	0.55	-0.6
2,322,070	-		IAI47_11005	0.55	+0.8
2,322,090	+		IAI47_11005	0.59	+2.6
2,322,090	+		IAI47_11005	0.59	+0.8
2,322,090	+		IAI47_11005	0.59	+0.6
2,322,090	+		IAI47_11005	0.59	-0.8
2,322,118	-		IAI47_11005	0.64	+1.5
2,322,132	+		IAI47_11005	0.67	+0.8
2,322,132	+		IAI47_11005	0.67	-0.2
2,322,132	+		IAI47_11005	0.67	-0.9
2,322,133	-		IAI47_11005	0.67	-0.6
2,322,163	-		IAI47_11005	0.73	-0.1
2,322,163	-		IAI47_11005	0.73	+1.9
2,322,198	+		IAI47_11005	0.79	+1.6
2,322,198	+		IAI47_11005	0.79	+1.8
2,322,199	-		IAI47_11005	0.79	+1.8
2,322,199	-		IAI47_11005	0.79	+0.5
2,322,199	-		IAI47_11005	0.79	+1.2
2,322,204	+		IAI47_11005	0.80	-0.1
2,322,204	+		IAI47_11005	0.80	-0.4
2,322,205	-		IAI47_11005	0.80	-0.8
2,322,205	-		IAI47_11005	0.80	-1.4
2,322,205	-		IAI47_11005	0.80	-1.4
2,322,205	-		IAI47_11005	0.80	+0.2
2,322,205	-		IAI47_11005	0.80	-0.6
2,322,205	-		IAI47_11005	0.80	-1.8
2,322,222	+		IAI47_11005	0.84	-0.7
2,322,222	+		IAI47_11005	0.84	-0.8
2,322,222	+		IAI47_11005	0.84	-0.2
2,322,222	+		IAI47_11005	0.84	+2.2
2,322,223	-		IAI47_11005	0.84	+1.2
2,322,223	-		IAI47_11005	0.84	+0.8
2,322,223	-		IAI47_11005	0.84	+0.0
2,322,244	+		IAI47_11005	0.88	+1.2
2,322,273	+				-0.8
2,322,274	-				-0.3
2,322,303	-				-0.1
2,322,303	-				-0.3
2,322,303	-				+0.5
2,322,303	-				+0.8
2,322,303	-				+0.2
2,322,312	+				+0.2
2,322,312	+				-0.1
2,322,312	+				+2.1
2,322,312	+				-0.0
2,322,312	+				+0.3
2,322,313	-				+0.0
2,322,313	-				+1.2
2,322,313	-				-1.9
2,322,313	-				-0.4
2,322,313	-				+2.5
2,322,349	-				+1.0
2,322,349	-				-0.1
2,322,375	+				+2.9
2,322,375	+				+1.2
2,322,375	+				+0.4
2,322,375	+				+1.0
2,322,375	+				-1.6
2,322,376	-				-1.8
2,322,376	-				-1.1
2,322,376	-				-1.1
2,322,376	-				+0.7
2,322,376	-				+0.6
2,322,422	+				-0.1
2,322,422	+				+0.6
2,322,423	-				+0.0
2,322,423	-				-0.2
2,322,423	-				+0.2
2,322,427	+				+0.5
2,322,428	-				+0.2
2,322,428	-				+0.7
2,322,428	-				-0.9
2,322,439	+				-0.8
2,322,439	+				+0.4
2,322,440	-				+0.6
2,322,440	-				-1.6
2,322,440	-				+0.2
2,322,440	-				+0.4
2,322,440	-				+1.7
2,322,441	+				-0.3
2,322,442	-				-0.4
2,322,442	-				+0.2
2,322,461	+				+0.1
2,322,462	-				-0.4
2,322,493	+				+0.6
2,322,493	+				+0.3
2,322,493	+				-0.2
2,322,504	+				-1.4
2,322,505	-				+2.1
2,322,548	-		IAI47_11010	0.14	+0.5
2,322,627	+		IAI47_11010	0.26	-1.6
2,322,627	+		IAI47_11010	0.26	+0.6
2,322,639	-		IAI47_11010	0.28	+0.5
2,322,639	-		IAI47_11010	0.28	+0.1
2,322,679	+		IAI47_11010	0.33	-1.1
2,322,679	+		IAI47_11010	0.33	+0.3
2,322,680	-		IAI47_11010	0.34	-0.5
2,322,688	+		IAI47_11010	0.35	+0.5
2,322,688	+		IAI47_11010	0.35	-0.7
2,322,688	+		IAI47_11010	0.35	-0.1
2,322,688	+		IAI47_11010	0.35	-0.5
2,322,689	-		IAI47_11010	0.35	-0.8
2,322,689	-		IAI47_11010	0.35	-0.8
2,322,689	-		IAI47_11010	0.35	-0.1
2,322,689	-		IAI47_11010	0.35	-1.6
2,322,691	+		IAI47_11010	0.35	+0.2
2,322,691	+		IAI47_11010	0.35	-0.8
2,322,691	+		IAI47_11010	0.35	-0.2
2,322,692	-		IAI47_11010	0.35	+0.5
2,322,692	-		IAI47_11010	0.35	+0.1
2,322,692	-		IAI47_11010	0.35	-0.0
2,322,692	-		IAI47_11010	0.35	-0.1
2,322,854	+		IAI47_11010	0.60	+0.2
2,322,890	+		IAI47_11010	0.65	+0.4
2,322,890	+		IAI47_11010	0.65	-0.1
2,322,890	+		IAI47_11010	0.65	+1.2
2,322,891	-		IAI47_11010	0.65	-1.1
2,322,895	+		IAI47_11010	0.66	+1.8
2,322,895	+		IAI47_11010	0.66	-1.0
2,322,895	+		IAI47_11010	0.66	+0.8
2,322,896	-		IAI47_11010	0.66	-2.5
2,322,896	-		IAI47_11010	0.66	-0.5
2,322,896	-		IAI47_11010	0.66	-0.7
2,322,896	-		IAI47_11010	0.66	+0.2
2,322,896	-		IAI47_11010	0.66	+0.4
2,322,914	+		IAI47_11010	0.69	-0.8
2,322,915	-		IAI47_11010	0.69	-1.4
2,322,915	-		IAI47_11010	0.69	-0.1
2,322,952	+		IAI47_11010	0.74	-0.9
2,322,953	-		IAI47_11010	0.74	-0.1
2,322,953	-		IAI47_11010	0.74	+0.1
2,322,953	-		IAI47_11010	0.74	+2.0
2,322,979	+		IAI47_11010	0.78	-0.4
2,322,979	+		IAI47_11010	0.78	+1.8
2,323,009	+		IAI47_11010	0.83	-1.6
2,323,027	-		IAI47_11010	0.86	-0.5
2,323,269	+				-0.3
2,323,270	-				+2.3
2,323,333	+				-0.0
2,323,401	-		IAI47_11015	0.12	+2.0
2,323,412	+		IAI47_11015	0.14	-0.1
2,323,456	-		IAI47_11015	0.19	+0.5
2,323,508	+		IAI47_11015	0.25	+0.2
2,323,508	+		IAI47_11015	0.25	+0.8
2,323,509	-		IAI47_11015	0.25	-0.9
2,323,509	-		IAI47_11015	0.25	+1.0
2,323,543	+		IAI47_11015	0.29	-1.6
2,323,543	+		IAI47_11015	0.29	-0.4
2,323,544	-		IAI47_11015	0.29	-0.3
2,323,544	-		IAI47_11015	0.29	+0.2
2,323,576	+		IAI47_11015	0.33	-0.6
2,323,577	-		IAI47_11015	0.33	-0.5
2,323,610	+		IAI47_11015	0.37	-2.5
2,323,610	+		IAI47_11015	0.37	-0.4
2,323,676	+		IAI47_11015	0.45	-0.4
2,323,789	+		IAI47_11015	0.59	-1.1
2,323,789	+		IAI47_11015	0.59	+1.1
2,323,911	-		IAI47_11015	0.73	+0.2
2,323,911	-		IAI47_11015	0.73	+0.8
2,323,911	-		IAI47_11015	0.73	+0.5
2,323,911	-		IAI47_11015	0.73	-0.6
2,323,916	+		IAI47_11015	0.74	+0.6
2,323,924	+		IAI47_11015	0.75	+1.2
2,323,989	+		IAI47_11015	0.83	-0.8
2,323,989	+		IAI47_11015	0.83	-0.3
2,323,989	+		IAI47_11015	0.83	+1.5
2,323,989	+		IAI47_11015	0.83	-0.3
2,323,990	-		IAI47_11015	0.83	+1.2
2,323,990	-		IAI47_11015	0.83	+0.2
2,323,993	+		IAI47_11015	0.83	-0.9
2,323,993	+		IAI47_11015	0.83	+0.2
2,323,993	+		IAI47_11015	0.83	-0.1
2,323,993	+		IAI47_11015	0.83	-0.8
2,323,993	+		IAI47_11015	0.83	+0.6
2,323,994	-		IAI47_11015	0.83	+0.2
2,323,994	-		IAI47_11015	0.83	+1.8
2,324,055	-				+1.0
2,324,062	+				+0.2
2,324,062	+				-0.5
2,324,063	-				-0.4
2,324,063	-				+0.7
2,324,063	-				+0.2