Strain Fitness in Pantoea sp. MT58 around IAI47_10930

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
2,308,000	-		IAI47_10925	0.21	-1.8
2,308,030	-		IAI47_10925	0.25	+0.2
2,308,087	-		IAI47_10925	0.33	-0.8
2,308,128	-		IAI47_10925	0.38	-0.8
2,308,128	-		IAI47_10925	0.38	-0.2
2,308,137	+		IAI47_10925	0.39	-2.4
2,308,138	-		IAI47_10925	0.39	-1.8
2,308,150	-		IAI47_10925	0.41	-1.8
2,308,290	+		IAI47_10925	0.60	+0.2
2,308,291	-		IAI47_10925	0.60	+0.8
2,308,295	-		IAI47_10925	0.60	-1.8
2,308,295	-		IAI47_10925	0.60	+1.8
2,308,336	-		IAI47_10925	0.66	-2.8
2,308,342	-		IAI47_10925	0.67	-1.8
2,308,342	-		IAI47_10925	0.67	+0.2
2,308,342	-		IAI47_10925	0.67	-1.4
2,308,342	-		IAI47_10925	0.67	-1.8
2,308,544	+				-0.8
2,308,545	-				-0.8
2,308,566	-				+0.8
2,308,605	-				-2.4
2,308,605	-				-1.1
2,308,625	+				-1.4
2,308,626	-				-1.1
2,308,627	+				-0.8
2,308,627	+				+0.6
2,308,628	-				-0.2
2,308,628	-				-2.4
2,308,628	-				-1.4
2,308,628	-				+0.2
2,308,631	-				-2.8
2,308,650	+				+0.1
2,308,721	-				-1.1
2,308,721	-				+0.5
2,308,753	+				-0.3
2,308,783	+				+0.7
2,308,783	+				-1.1
2,308,787	-				+2.1
2,308,787	-				+1.0
2,308,787	-				-0.8
2,308,802	+				-0.2
2,308,802	+				+0.6
2,308,813	+				+3.2
2,308,813	+				+0.4
2,308,818	+				+1.1
2,308,827	+				+0.1
2,308,827	+				+0.2
2,308,828	-				+2.8
2,308,849	+				-1.6
2,308,861	+				-0.0
2,308,861	+				-1.4
2,308,861	+				+0.6
2,308,890	+				-0.6
2,308,891	-				-1.6
2,308,922	+				+1.1
2,308,922	+				+0.5
2,308,948	+		IAI47_10930	0.14	-0.1
2,308,948	+		IAI47_10930	0.14	+0.6
2,308,949	-		IAI47_10930	0.14	+0.2
2,308,949	-		IAI47_10930	0.14	+0.0
2,308,994	+		IAI47_10930	0.24	-1.2
2,308,994	+		IAI47_10930	0.24	+0.2
2,308,994	+		IAI47_10930	0.24	+0.1
2,308,994	+		IAI47_10930	0.24	-0.6
2,308,994	+		IAI47_10930	0.24	-0.4
2,308,994	+		IAI47_10930	0.24	+0.8
2,308,994	+		IAI47_10930	0.24	+1.2
2,308,995	-		IAI47_10930	0.24	+1.0
2,308,995	-		IAI47_10930	0.24	-0.3
2,308,995	-		IAI47_10930	0.24	-0.6
2,308,998	+		IAI47_10930	0.25	-0.2
2,308,999	-		IAI47_10930	0.25	-0.2
2,309,070	+		IAI47_10930	0.40	-0.2
2,309,070	+		IAI47_10930	0.40	+0.2
2,309,150	+		IAI47_10930	0.58	+1.6
2,309,150	+		IAI47_10930	0.58	+0.2
2,309,151	-		IAI47_10930	0.58	-0.2
2,309,151	-		IAI47_10930	0.58	+1.0
2,309,151	-		IAI47_10930	0.58	-1.2
2,309,196	-		IAI47_10930	0.68	-0.3
2,309,277	+		IAI47_10930	0.85	-0.7
2,309,277	+		IAI47_10930	0.85	+1.8
2,309,277	+		IAI47_10930	0.85	+0.4
2,309,278	-		IAI47_10930	0.86	-0.4
2,309,320	+				-0.8
2,309,321	-				-0.2
2,309,367	+				+1.8
2,309,367	+				-1.0
2,309,368	-				-0.9
2,309,378	+				+0.6
2,309,378	+				+0.2
2,309,378	+				-0.5
2,309,378	+				-0.8
2,309,378	+				-0.4
2,309,379	-				+0.8
2,309,379	-				-0.3
2,309,379	-				-0.2
2,309,383	+				+3.0
2,309,383	+				+0.2
2,309,383	+				-1.0
2,309,384	-				-0.2
2,309,389	+				+1.2
2,309,403	+				-0.5
2,309,403	+				-0.4
2,309,403	+				+1.0
2,309,403	+				-0.5
2,309,403	+				+0.2
2,309,403	+				+0.5
2,309,404	-				+0.1
2,309,404	-				-0.5
2,309,404	-				+0.9
2,309,404	-				+0.2
2,309,404	-				+0.5
2,309,404	-				+1.2
2,309,473	+				-0.2
2,309,612	+		IAI47_10935	0.27	-1.6
2,309,613	-		IAI47_10935	0.27	-0.5
2,309,697	+		IAI47_10935	0.38	+1.2
2,309,697	+		IAI47_10935	0.38	-0.3
2,309,803	-		IAI47_10935	0.52	-1.0
2,309,803	-		IAI47_10935	0.52	+0.8
2,309,808	-		IAI47_10935	0.53	-1.8
2,309,837	+		IAI47_10935	0.57	+0.2
2,309,837	+		IAI47_10935	0.57	+0.2
2,309,838	-				+1.6
2,309,886	+		IAI47_10935	0.63	-0.8
2,309,886	+		IAI47_10935	0.63	+0.3
2,309,886	+		IAI47_10935	0.63	+1.2
2,309,887	-		IAI47_10935	0.63	-0.1
2,309,887	-		IAI47_10935	0.63	-1.4
2,309,890	+		IAI47_10935	0.64	-0.2
2,309,890	+		IAI47_10935	0.64	-1.8
2,309,890	+		IAI47_10935	0.64	-0.5
2,309,891	-		IAI47_10935	0.64	-1.4
2,310,042	+		IAI47_10935	0.84	-0.4
2,310,042	+		IAI47_10935	0.84	+0.0
2,310,042	+		IAI47_10935	0.84	+0.2
2,310,042	+		IAI47_10935	0.84	+0.7
2,310,042	+		IAI47_10935	0.84	-0.4
2,310,042	+		IAI47_10935	0.84	-0.2
2,310,043	-		IAI47_10935	0.84	+0.2
2,310,043	-		IAI47_10935	0.84	-1.0
2,310,043	-		IAI47_10935	0.84	-0.5
2,310,043	-		IAI47_10935	0.84	+0.6
2,310,053	+		IAI47_10935	0.85	+1.8
2,310,053	+		IAI47_10935	0.85	-0.8
2,310,153	+				+1.0
2,310,154	-				-0.3
2,310,154	-				+1.8
2,310,154	-				+0.2
2,310,163	+				-0.9
2,310,163	+				-0.1
2,310,164	-				+0.5
2,310,164	-				-1.6
2,310,164	-				-1.0
2,310,164	-				-1.0
2,310,182	+				+0.6
2,310,218	+		IAI47_10940	0.10	-0.4
2,310,218	+		IAI47_10940	0.10	-0.9
2,310,218	+		IAI47_10940	0.10	+1.0
2,310,218	+		IAI47_10940	0.10	+1.0
2,310,219	-		IAI47_10940	0.10	-0.6
2,310,219	-		IAI47_10940	0.10	-0.2
2,310,219	-		IAI47_10940	0.10	-0.0
2,310,317	+		IAI47_10940	0.28	-1.0
2,310,317	+		IAI47_10940	0.28	-0.1
2,310,317	+		IAI47_10940	0.28	-0.4
2,310,318	-		IAI47_10940	0.29	-1.4
2,310,327	-		IAI47_10940	0.30	-1.9
2,310,327	-		IAI47_10940	0.30	+0.6