Strain Fitness in Pantoea sp. MT58 around IAI47_09590

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
2,026,795	-				+1.2
2,026,801	+				-0.1
2,026,824	+				-0.9
2,026,824	+				+2.1
2,026,843	-				+0.9
2,026,843	-				-0.3
2,026,847	-				-0.0
2,026,847	-				+0.2
2,026,847	-				+0.7
2,026,847	-				+1.8
2,026,902	+				-0.6
2,026,918	-				+0.6
2,026,918	-				+0.9
2,026,918	-				+0.2
2,026,928	+				-0.8
2,026,974	-				-2.2
2,027,004	-				+0.6
2,027,004	-				-0.2
2,027,004	-				-0.6
2,027,065	-				+0.8
2,027,080	+				+2.2
2,027,080	+				+0.7
2,027,086	-				-0.8
2,027,086	-				-0.3
2,027,093	-				-0.8
2,027,155	+				-0.1
2,027,156	-				-0.0
2,027,156	-				+0.9
2,027,156	-				-0.3
2,027,274	+		IAI47_09585	0.23	+1.0
2,027,274	+		IAI47_09585	0.23	+0.8
2,027,275	-		IAI47_09585	0.24	+0.2
2,027,309	-		IAI47_09585	0.30	-1.0
2,027,309	-		IAI47_09585	0.30	-1.1
2,027,309	-		IAI47_09585	0.30	-0.8
2,027,317	+		IAI47_09585	0.31	-0.0
2,027,317	+		IAI47_09585	0.31	-0.2
2,027,317	+		IAI47_09585	0.31	-0.9
2,027,317	+		IAI47_09585	0.31	-0.5
2,027,318	-		IAI47_09585	0.31	-0.5
2,027,318	-		IAI47_09585	0.31	+0.1
2,027,318	-		IAI47_09585	0.31	+1.4
2,027,320	+		IAI47_09585	0.32	+2.2
2,027,320	+		IAI47_09585	0.32	+0.4
2,027,320	+		IAI47_09585	0.32	-0.8
2,027,320	+		IAI47_09585	0.32	-1.0
2,027,320	+		IAI47_09585	0.32	+0.1
2,027,320	+		IAI47_09585	0.32	-1.1
2,027,321	-		IAI47_09585	0.32	+1.4
2,027,333	+		IAI47_09585	0.34	-0.2
2,027,334	-		IAI47_09585	0.34	-0.6
2,027,335	+		IAI47_09585	0.34	+0.9
2,027,336	-		IAI47_09585	0.34	-0.2
2,027,360	-		IAI47_09585	0.39	+0.8
2,027,387	+		IAI47_09585	0.43	-0.1
2,027,387	+		IAI47_09585	0.43	+0.1
2,027,387	+		IAI47_09585	0.43	-1.8
2,027,387	+		IAI47_09585	0.43	+1.8
2,027,387	+		IAI47_09585	0.43	-0.8
2,027,388	-		IAI47_09585	0.44	+0.3
2,027,388	-		IAI47_09585	0.44	-0.7
2,027,388	-		IAI47_09585	0.44	+0.2
2,027,388	-		IAI47_09585	0.44	+1.0
2,027,388	-		IAI47_09585	0.44	-0.8
2,027,388	-		IAI47_09585	0.44	-0.7
2,027,388	-		IAI47_09585	0.44	+0.6
2,027,415	+		IAI47_09585	0.48	-2.1
2,027,416	-		IAI47_09585	0.49	+1.2
2,027,458	+		IAI47_09585	0.56	-0.2
2,027,458	+		IAI47_09585	0.56	+0.4
2,027,458	+		IAI47_09585	0.56	+0.8
2,027,459	-		IAI47_09585	0.56	+1.2
2,027,521	+		IAI47_09585	0.67	-0.3
2,027,521	+		IAI47_09585	0.67	+0.3
2,027,522	-		IAI47_09585	0.67	+0.4
2,027,539	+		IAI47_09585	0.70	+1.2
2,027,544	+		IAI47_09585	0.71	+0.5
2,027,544	+		IAI47_09585	0.71	-0.5
2,027,544	+		IAI47_09585	0.71	+0.3
2,027,544	+		IAI47_09585	0.71	+3.4
2,027,545	-		IAI47_09585	0.71	-0.5
2,027,545	-		IAI47_09585	0.71	-1.4
2,027,545	-		IAI47_09585	0.71	-0.6
2,027,552	+		IAI47_09585	0.72	-0.8
2,027,552	+		IAI47_09585	0.72	-0.1
2,027,552	+		IAI47_09585	0.72	-0.0
2,027,553	-		IAI47_09585	0.73	+0.5
2,027,553	-		IAI47_09585	0.73	+0.2
2,027,568	+		IAI47_09585	0.75	-1.0
2,027,569	-		IAI47_09585	0.75	-0.0
2,027,586	+		IAI47_09585	0.78	-1.7
2,027,586	+		IAI47_09585	0.78	-0.8
2,027,636	+		IAI47_09585	0.87	+0.2
2,027,637	-		IAI47_09585	0.87	-0.6
2,027,647	-		IAI47_09585	0.89	-0.1
2,027,705	+				+0.5
2,027,719	-				+0.5
2,027,727	+				-1.3
2,027,727	+				-1.5
2,027,728	-				-0.5
2,027,728	-				+0.8
2,027,775	+				-1.3
2,027,775	+				-2.1
2,027,776	-				+0.2
2,027,776	-				-0.7
2,027,880	+		IAI47_09590	0.19	-1.7
2,027,880	+		IAI47_09590	0.19	-2.1
2,027,880	+		IAI47_09590	0.19	+0.2
2,027,881	-		IAI47_09590	0.19	-2.1
2,027,881	-		IAI47_09590	0.19	+0.1
2,027,881	-		IAI47_09590	0.19	-0.5
2,027,881	-		IAI47_09590	0.19	-1.5
2,027,881	-		IAI47_09590	0.19	-1.4
2,027,882	+		IAI47_09590	0.19	-1.4
2,027,882	+		IAI47_09590	0.19	-0.6
2,027,882	+		IAI47_09590	0.19	-2.1
2,027,882	+		IAI47_09590	0.19	+0.2
2,027,883	-		IAI47_09590	0.19	+0.1
2,027,883	-		IAI47_09590	0.19	-1.8
2,027,883	-		IAI47_09590	0.19	-0.8
2,027,883	-		IAI47_09590	0.19	-1.0
2,027,883	-		IAI47_09590	0.19	-1.8
2,027,883	-		IAI47_09590	0.19	-1.4
2,027,883	-		IAI47_09590	0.19	-1.4
2,027,952	+		IAI47_09590	0.27	-1.8
2,027,952	+		IAI47_09590	0.27	-1.0
2,027,952	+		IAI47_09590	0.27	-1.8
2,027,952	+		IAI47_09590	0.27	-1.2
2,027,952	+		IAI47_09590	0.27	-2.1
2,027,952	+		IAI47_09590	0.27	-3.0
2,027,952	+		IAI47_09590	0.27	-0.9
2,027,952	+		IAI47_09590	0.27	-0.8
2,027,952	+		IAI47_09590	0.27	+0.0
2,027,953	-		IAI47_09590	0.27	-2.7
2,027,953	-		IAI47_09590	0.27	-2.0
2,027,953	-		IAI47_09590	0.27	-0.6
2,027,953	-		IAI47_09590	0.27	-1.7
2,027,953	-		IAI47_09590	0.27	-0.2
2,027,953	-		IAI47_09590	0.27	-1.5
2,027,953	-		IAI47_09590	0.27	-2.5
2,027,953	-		IAI47_09590	0.27	-0.5
2,027,953	-		IAI47_09590	0.27	+0.2
2,028,082	+		IAI47_09590	0.41	-0.5
2,028,083	-		IAI47_09590	0.41	-0.8
2,028,093	+		IAI47_09590	0.42	-1.6
2,028,093	+		IAI47_09590	0.42	+0.2
2,028,093	+		IAI47_09590	0.42	-2.1
2,028,094	-		IAI47_09590	0.42	-0.8
2,028,094	-		IAI47_09590	0.42	-0.0
2,028,094	-		IAI47_09590	0.42	-0.9
2,028,119	+		IAI47_09590	0.45	-1.8
2,028,119	+		IAI47_09590	0.45	-1.4
2,028,119	+		IAI47_09590	0.45	-1.4
2,028,119	+		IAI47_09590	0.45	-2.6
2,028,119	+		IAI47_09590	0.45	-2.8
2,028,119	+		IAI47_09590	0.45	-3.1
2,028,119	+		IAI47_09590	0.45	-2.7
2,028,120	-		IAI47_09590	0.45	+0.2
2,028,120	-		IAI47_09590	0.45	-0.4
2,028,120	-		IAI47_09590	0.45	-1.4
2,028,120	-		IAI47_09590	0.45	-1.1
2,028,188	-		IAI47_09590	0.53	-2.0
2,028,231	+		IAI47_09590	0.57	-2.1
2,028,231	+		IAI47_09590	0.57	-3.0
2,028,232	-		IAI47_09590	0.57	-1.8
2,028,232	-		IAI47_09590	0.57	-0.1
2,028,237	+		IAI47_09590	0.58	-1.1
2,028,237	+		IAI47_09590	0.58	-0.6
2,028,238	-		IAI47_09590	0.58	+1.2
2,028,238	-		IAI47_09590	0.58	+0.6
2,028,247	+		IAI47_09590	0.59	-1.0
2,028,247	+		IAI47_09590	0.59	+0.5
2,028,247	+		IAI47_09590	0.59	-2.1
2,028,248	-		IAI47_09590	0.59	+0.4
2,028,496	-		IAI47_09590	0.86	-1.2
2,028,496	-		IAI47_09590	0.86	-0.8
2,028,496	-		IAI47_09590	0.86	-0.8
2,028,546	+				-1.2
2,028,546	+				-0.8
2,028,546	+				-2.4
2,028,546	+				-1.8
2,028,546	+				-1.1
2,028,577	+				-1.8
2,028,578	-				-1.2
2,028,578	-				+0.7
2,028,635	+				-3.0
2,028,636	-				+0.2
2,028,736	+				-0.9
2,028,764	+				-1.0
2,028,765	-				+0.5
2,028,775	+				-2.6
2,028,775	+				-2.3
2,028,775	+				-0.8
2,028,814	+				-0.8
2,028,866	-				-0.4
2,028,866	-				+0.5
2,028,866	-				+0.6
2,028,887	+				-1.1
2,028,904	-				+0.4
2,028,907	+				-0.8
2,028,907	+				-0.0
2,028,964	+				+0.2
2,028,964	+				-0.8
2,028,964	+				-0.1
2,028,965	-				-0.3
2,028,965	-				+0.4
2,028,965	-				+0.8
2,028,980	+				+0.6
2,028,980	+				+1.8
2,028,981	-				-0.8
2,028,981	-				+0.2
2,029,035	-				+0.9
2,029,042	+				-0.6
2,029,042	+				+1.4
2,029,042	+				+0.3
2,029,042	+				+1.4
2,029,043	-				-0.3
2,029,043	-				-0.9
2,029,070	+				+1.3
2,029,079	+		IAI47_09595	0.10	+2.5
2,029,080	-		IAI47_09595	0.10	+0.4
2,029,111	+		IAI47_09595	0.12	+2.2
2,029,150	+		IAI47_09595	0.15	-0.1
2,029,178	-		IAI47_09595	0.17	+0.9
2,029,220	+		IAI47_09595	0.21	-1.2
2,029,220	+		IAI47_09595	0.21	-0.3
2,029,220	+		IAI47_09595	0.21	+2.8
2,029,220	+		IAI47_09595	0.21	-0.2
2,029,221	-		IAI47_09595	0.21	-2.1
2,029,221	-		IAI47_09595	0.21	+1.4
2,029,221	-		IAI47_09595	0.21	-0.4
2,029,225	+		IAI47_09595	0.21	-1.7
2,029,226	-		IAI47_09595	0.21	-0.6
2,029,226	-		IAI47_09595	0.21	+1.4
2,029,362	+		IAI47_09595	0.31	-0.1
2,029,362	+		IAI47_09595	0.31	-1.4
2,029,363	-		IAI47_09595	0.31	-1.4
2,029,363	-		IAI47_09595	0.31	+0.9
2,029,391	+		IAI47_09595	0.33	-0.2
2,029,391	+		IAI47_09595	0.33	+0.6
2,029,392	-		IAI47_09595	0.33	+1.1
2,029,392	-		IAI47_09595	0.33	-0.2
2,029,470	-		IAI47_09595	0.39	-0.4
2,029,470	-		IAI47_09595	0.39	+0.5
2,029,489	+		IAI47_09595	0.41	-0.8
2,029,490	-		IAI47_09595	0.41	+1.2
2,029,501	+		IAI47_09595	0.42	+1.1
2,029,501	+		IAI47_09595	0.42	+0.8
2,029,501	+		IAI47_09595	0.42	-0.4
2,029,502	-		IAI47_09595	0.42	-0.3
2,029,502	-		IAI47_09595	0.42	+0.1
2,029,525	+		IAI47_09595	0.43	-1.8
2,029,525	+		IAI47_09595	0.43	-0.6
2,029,525	+		IAI47_09595	0.43	+0.2
2,029,525	+		IAI47_09595	0.43	+0.7