Strain Fitness in Pantoea sp. MT58 around IAI47_09555

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
2,017,949	+		IAI47_09545	0.64	+0.6
2,017,949	+		IAI47_09545	0.64	+0.9
2,017,950	-		IAI47_09545	0.64	-1.2
2,018,054	+		IAI47_09545	0.78	-0.4
2,018,055	-		IAI47_09545	0.79	-0.4
2,018,088	+		IAI47_09545	0.83	+1.0
2,018,135	+		IAI47_09545	0.90	-0.4
2,018,136	-		IAI47_09545	0.90	-0.7
2,018,152	+				+1.3
2,018,152	+				+0.6
2,018,194	+				+1.4
2,018,194	+				-0.0
2,018,195	-				+0.2
2,018,195	-				-1.4
2,018,210	+				+0.8
2,018,210	+				+0.0
2,018,210	+				+0.5
2,018,210	+				-0.1
2,018,211	-				+1.2
2,018,211	-				-0.2
2,018,211	-				-1.8
2,018,211	-				-0.4
2,018,211	-				-0.9
2,018,246	+				+0.3
2,018,247	-				+0.5
2,018,247	-				+0.2
2,018,247	-				+1.0
2,018,247	-				-0.5
2,018,269	+				+2.2
2,018,270	-				-0.8
2,018,270	-				-1.4
2,018,270	-				-0.8
2,018,270	-				+1.8
2,018,270	-				-1.0
2,018,303	+				+1.6
2,018,303	+				+2.3
2,018,303	+				+0.7
2,018,303	+				+0.6
2,018,304	-				+1.2
2,018,304	-				+1.0
2,018,304	-				+1.8
2,018,305	+				+1.0
2,018,305	+				-1.0
2,018,305	+				+0.0
2,018,305	+				+0.4
2,018,305	+				-0.2
2,018,305	+				+2.9
2,018,305	+				+0.7
2,018,305	+				+0.5
2,018,305	+				-0.8
2,018,306	-				+0.5
2,018,306	-				+1.1
2,018,306	-				+1.5
2,018,306	-				+1.2
2,018,307	+				-0.8
2,018,307	+				+0.1
2,018,307	+				-0.5
2,018,307	+				+1.0
2,018,307	+				-1.1
2,018,307	+				-0.8
2,018,308	-				+0.2
2,018,308	-				+0.8
2,018,308	-				+0.2
2,018,308	-				+1.5
2,018,308	-				+0.1
2,018,308	-				-0.4
2,018,317	+				-1.2
2,018,317	+				-1.7
2,018,317	+				-1.4
2,018,317	+				+0.1
2,018,317	+				+1.5
2,018,317	+				-1.5
2,018,317	+				-2.1
2,018,317	+				+0.2
2,018,318	-				+2.1
2,018,362	+				+1.8
2,018,371	-				+0.7
2,018,386	-				+0.2
2,018,386	-				+1.0
2,018,397	+				+1.2
2,018,417	+				+2.2
2,018,417	+				+0.2
2,018,417	+				+0.6
2,018,418	-				+1.2
2,018,418	-				-0.5
2,018,496	+		IAI47_09550	0.26	+1.8
2,018,496	+		IAI47_09550	0.26	+1.7
2,018,496	+		IAI47_09550	0.26	+1.0
2,018,496	+		IAI47_09550	0.26	+0.2
2,018,496	+		IAI47_09550	0.26	+1.2
2,018,497	-		IAI47_09550	0.26	-0.0
2,018,497	-		IAI47_09550	0.26	+1.8
2,018,497	-		IAI47_09550	0.26	+0.5
2,018,497	-		IAI47_09550	0.26	+0.9
2,018,500	+		IAI47_09550	0.27	+0.5
2,018,500	+		IAI47_09550	0.27	+0.2
2,018,500	+		IAI47_09550	0.27	-2.1
2,018,500	+		IAI47_09550	0.27	-0.3
2,018,536	-		IAI47_09550	0.36	-0.1
2,018,536	-		IAI47_09550	0.36	-0.1
2,018,552	+		IAI47_09550	0.39	+1.5
2,018,553	-		IAI47_09550	0.40	+0.7
2,018,574	-		IAI47_09550	0.45	+1.0
2,018,588	+		IAI47_09550	0.48	-0.5
2,018,588	+		IAI47_09550	0.48	+2.0
2,018,640	+		IAI47_09550	0.61	+0.5
2,018,663	+		IAI47_09550	0.66	+0.2
2,018,664	-		IAI47_09550	0.66	-0.8
2,018,800	+				+0.2
2,018,800	+				+0.2
2,018,800	+				-0.4
2,018,800	+				+2.7
2,018,800	+				+0.9
2,018,800	+				-0.6
2,018,800	+				+0.4
2,018,800	+				+0.2
2,018,801	-				-1.0
2,018,821	+				-1.6
2,018,822	-				+3.2
2,018,822	-				+0.2
2,018,824	+				-1.7
2,018,824	+				+1.8
2,018,825	-				+0.2
2,018,825	-				-1.0
2,018,825	-				+0.3
2,018,858	+				+0.1
2,018,858	+				+1.8
2,018,859	-				+0.2
2,018,868	+				+0.2
2,018,868	+				+0.3
2,018,868	+				+0.5
2,018,869	-				-1.4
2,018,869	-				-0.1
2,018,869	-				-1.1
2,018,869	-				-1.2
2,018,869	-				-0.8
2,018,937	+				-0.8
2,018,937	+				-1.4
2,018,937	+				+0.0
2,018,937	+				+1.2
2,018,937	+				-0.0
2,018,938	-				-1.4
2,018,938	-				-0.3
2,018,938	-				+1.5
2,018,938	-				-0.5
2,018,938	-				+0.2
2,018,938	-				+0.2
2,018,982	-				+0.1
2,018,982	-				+0.2
2,019,072	+				+0.5
2,019,072	+				-0.2
2,019,073	-				-0.4
2,019,115	-		IAI47_09555	0.13	-1.0
2,019,115	-		IAI47_09555	0.13	-0.5
2,019,132	+		IAI47_09555	0.14	+1.2
2,019,132	+		IAI47_09555	0.14	-0.5
2,019,132	+		IAI47_09555	0.14	-0.5
2,019,132	+		IAI47_09555	0.14	+0.5
2,019,132	+		IAI47_09555	0.14	+1.5
2,019,172	+		IAI47_09555	0.17	-0.4
2,019,172	+		IAI47_09555	0.17	-0.3
2,019,172	+		IAI47_09555	0.17	+0.4
2,019,201	+		IAI47_09555	0.19	+0.2
2,019,201	+		IAI47_09555	0.19	+1.3
2,019,202	-		IAI47_09555	0.19	+0.4
2,019,202	-		IAI47_09555	0.19	-1.2
2,019,202	-		IAI47_09555	0.19	-0.9
2,019,203	+		IAI47_09555	0.19	-0.4
2,019,204	-		IAI47_09555	0.19	-0.2
2,019,215	+		IAI47_09555	0.20	-0.1
2,019,216	-		IAI47_09555	0.20	-0.9
2,019,216	-		IAI47_09555	0.20	+0.1
2,019,216	-		IAI47_09555	0.20	+0.5
2,019,216	-		IAI47_09555	0.20	+1.0
2,019,219	+		IAI47_09555	0.20	+1.0
2,019,219	+		IAI47_09555	0.20	+1.8
2,019,259	+		IAI47_09555	0.23	+0.2
2,019,259	+		IAI47_09555	0.23	+0.5
2,019,260	-		IAI47_09555	0.23	-0.3
2,019,264	+		IAI47_09555	0.24	-0.4
2,019,264	+		IAI47_09555	0.24	-0.6
2,019,264	+		IAI47_09555	0.24	+0.8
2,019,264	+		IAI47_09555	0.24	-1.0
2,019,264	+		IAI47_09555	0.24	+1.1
2,019,265	-		IAI47_09555	0.24	+1.2
2,019,268	+		IAI47_09555	0.24	-0.6
2,019,268	+		IAI47_09555	0.24	+0.0
2,019,269	-		IAI47_09555	0.24	+0.3
2,019,269	-		IAI47_09555	0.24	-1.1
2,019,368	-		IAI47_09555	0.31	+2.8
2,019,438	+		IAI47_09555	0.36	-1.3
2,019,439	-		IAI47_09555	0.36	-0.1
2,019,439	-		IAI47_09555	0.36	+1.5
2,019,595	-		IAI47_09555	0.47	-0.3
2,019,595	-		IAI47_09555	0.47	+0.9
2,019,603	-		IAI47_09555	0.48	+1.0
2,019,694	+		IAI47_09555	0.54	+1.1
2,019,790	-		IAI47_09555	0.61	-0.8
2,019,790	-		IAI47_09555	0.61	-0.8
2,019,827	+		IAI47_09555	0.64	+1.8
2,019,828	-		IAI47_09555	0.64	-0.8
2,019,967	+		IAI47_09555	0.74	-0.8
2,019,968	-		IAI47_09555	0.74	+1.4
2,020,016	+		IAI47_09555	0.78	-1.4
2,020,017	-		IAI47_09555	0.78	+0.6
2,020,017	-		IAI47_09555	0.78	+0.6
2,020,017	-		IAI47_09555	0.78	+0.7
2,020,024	-		IAI47_09555	0.78	+0.1
2,020,056	+		IAI47_09555	0.80	-1.4
2,020,057	-		IAI47_09555	0.81	+0.9
2,020,082	+		IAI47_09555	0.82	+0.2
2,020,082	+		IAI47_09555	0.82	+1.0
2,020,108	-		IAI47_09555	0.84	-0.8
2,020,111	+		IAI47_09555	0.84	+0.4
2,020,111	+		IAI47_09555	0.84	+1.2
2,020,111	+		IAI47_09555	0.84	+0.6
2,020,111	+		IAI47_09555	0.84	-0.0
2,020,111	+		IAI47_09555	0.84	-0.2
2,020,111	+		IAI47_09555	0.84	-0.4
2,020,111	+		IAI47_09555	0.84	+1.8
2,020,112	-		IAI47_09555	0.84	+0.1
2,020,112	-		IAI47_09555	0.84	-0.5
2,020,112	-		IAI47_09555	0.84	-0.5
2,020,112	-		IAI47_09555	0.84	+0.5
2,020,139	-		IAI47_09555	0.86	+0.2
2,020,149	-		IAI47_09555	0.87	+0.0
2,020,177	+		IAI47_09555	0.89	+0.3
2,020,177	+		IAI47_09555	0.89	-0.1
2,020,178	-		IAI47_09555	0.89	+0.8
2,020,178	-		IAI47_09555	0.89	-0.1
2,020,178	-		IAI47_09555	0.89	-0.2
2,020,347	+				+2.0
2,020,347	+				-2.0
2,020,347	+				+0.8
2,020,347	+				-0.4
2,020,347	+				-1.5
2,020,347	+				+0.6
2,020,347	+				+0.2
2,020,347	+				-0.8
2,020,347	+				-0.3
2,020,347	+				-0.6
2,020,347	+				+0.2
2,020,347	+				-0.0
2,020,347	+				+1.2
2,020,348	-				-0.0
2,020,348	-				+1.5
2,020,348	-				-0.5
2,020,348	-				-1.0
2,020,348	-				+1.2
2,020,348	-				-0.7
2,020,348	-				+0.7
2,020,348	-				-0.8
2,020,348	-				-0.4
2,020,348	-				-0.8
2,020,348	-				+0.0
2,020,348	-				-0.5
2,020,348	-				-0.3
2,020,348	-				+0.0
2,020,348	-				+0.2
2,020,349	+				+1.4
2,020,349	+				-0.5
2,020,349	+				+2.0
2,020,349	+				-0.9
2,020,349	+				-1.0
2,020,349	+				-0.2
2,020,349	+				-0.7
2,020,349	+				+0.2
2,020,349	+				+2.0
2,020,349	+				+1.2
2,020,349	+				+0.4
2,020,349	+				-1.2
2,020,349	+				+0.7
2,020,349	+				-0.0
2,020,349	+				-2.1
2,020,349	+				-1.4
2,020,349	+				+0.6
2,020,349	+				+0.5
2,020,349	+				+1.2
2,020,349	+				+2.0
2,020,349	+				+0.2
2,020,349	+				+1.1
2,020,349	+				-0.1
2,020,350	-				+0.2
2,020,350	-				+1.2
2,020,350	-				-0.0
2,020,350	-				+0.2
2,020,350	-				+1.6
2,020,350	-				+0.1
2,020,350	-				-1.4
2,020,350	-				-0.8
2,020,350	-				+0.0
2,020,350	-				+2.5
2,020,350	-				+0.6
2,020,350	-				-0.2
2,020,350	-				-1.4
2,020,350	-				+0.8
2,020,369	+				-0.5
2,020,369	+				+0.4
2,020,369	+				-0.0
2,020,371	+				+0.3
2,020,371	+				+0.7
2,020,371	+				-1.1
2,020,371	+				+0.8
2,020,372	-				-0.4
2,020,382	+				+0.2
2,020,382	+				+1.2
2,020,382	+				-0.1
2,020,383	-				-0.0
2,020,383	-				-0.1
2,020,383	-				-0.8
2,020,414	+				-1.1
2,020,414	+				-0.2
2,020,469	+				-0.6
2,020,469	+				+0.7
2,020,469	+				-0.4
2,020,469	+				+0.2
2,020,469	+				-0.5
2,020,469	+				+0.8
2,020,470	-				+1.1
2,020,470	-				+0.5
2,020,470	-				+0.0
2,020,470	-				+1.2
2,020,470	-				-0.2
2,020,470	-				+0.7
2,020,470	-				+0.2
2,020,470	-				+1.6
2,020,470	-				-0.4
2,020,473	+				-0.4
2,020,474	-				-0.5
2,020,474	-				+0.2
2,020,474	-				+0.2
2,020,474	-				+0.2
2,020,532	+				-1.2
2,020,533	-				-1.4
2,020,533	-				-0.4
2,020,536	+				-2.0
2,020,537	-				+0.3
2,020,537	-				+1.5
2,020,537	-				-0.0
2,020,537	-				+0.8
2,020,601	+				+0.2
2,020,601	+				-0.4
2,020,601	+				+0.2
2,020,601	+				-2.4
2,020,601	+				-0.9
2,020,602	-				+0.2
2,020,617	+				+1.1
2,020,618	-				+0.5
2,020,618	-				+2.0
2,020,618	-				+0.2
2,020,656	+		IAI47_09560	0.13	+1.0
2,020,656	+		IAI47_09560	0.13	+0.2
2,020,657	-		IAI47_09560	0.13	-0.3
2,020,657	-		IAI47_09560	0.13	+1.2
2,020,657	-		IAI47_09560	0.13	+1.0
2,020,744	-		IAI47_09560	0.22	-0.7
2,020,744	-		IAI47_09560	0.22	-1.4
2,020,766	+		IAI47_09560	0.25	+0.2
2,020,852	+		IAI47_09560	0.34	-1.0
2,020,852	+		IAI47_09560	0.34	+0.0
2,020,853	-		IAI47_09560	0.34	-0.3
2,020,853	-		IAI47_09560	0.34	+0.7
2,020,853	-		IAI47_09560	0.34	-0.0
2,020,893	+		IAI47_09560	0.38	-1.2
2,020,893	+		IAI47_09560	0.38	-2.1
2,020,894	-		IAI47_09560	0.38	-0.1
2,020,894	-		IAI47_09560	0.38	+0.8
2,020,938	+		IAI47_09560	0.43	+0.2
2,020,938	+		IAI47_09560	0.43	+1.2
2,020,938	+		IAI47_09560	0.43	-0.9
2,020,938	+		IAI47_09560	0.43	+0.2
2,020,939	-		IAI47_09560	0.43	+0.2
2,020,939	-		IAI47_09560	0.43	-0.4
2,020,939	-		IAI47_09560	0.43	-1.2
2,020,961	+		IAI47_09560	0.45	-0.5
2,020,961	+		IAI47_09560	0.45	+0.0
2,020,962	-		IAI47_09560	0.45	-0.4
2,020,962	-		IAI47_09560	0.45	-0.8
2,020,967	+		IAI47_09560	0.46	+1.1
2,020,967	+		IAI47_09560	0.46	-0.5
2,020,967	+		IAI47_09560	0.46	-1.4
2,020,967	+		IAI47_09560	0.46	-0.3
2,020,967	+		IAI47_09560	0.46	+0.5
2,020,968	-		IAI47_09560	0.46	+0.4
2,020,968	-		IAI47_09560	0.46	-0.9
2,020,968	-		IAI47_09560	0.46	-1.2
2,020,968	-		IAI47_09560	0.46	+1.0
2,020,968	-		IAI47_09560	0.46	-0.5
2,020,968	-		IAI47_09560	0.46	-1.4
2,020,968	-		IAI47_09560	0.46	-0.0
2,020,979	+		IAI47_09560	0.47	-0.3
2,020,979	+		IAI47_09560	0.47	+0.7
2,020,979	+		IAI47_09560	0.47	+0.6
2,020,979	+		IAI47_09560	0.47	+0.2
2,020,979	+		IAI47_09560	0.47	+0.2
2,020,980	-		IAI47_09560	0.47	-0.5
2,020,980	-		IAI47_09560	0.47	+1.2
2,020,980	-		IAI47_09560	0.47	-1.3
2,020,998	+		IAI47_09560	0.49	+0.8
2,020,998	+		IAI47_09560	0.49	+0.3
2,020,999	-		IAI47_09560	0.49	+1.5
2,021,113	-		IAI47_09560	0.61	-1.2
2,021,113	-		IAI47_09560	0.61	-0.7
2,021,132	+		IAI47_09560	0.63	-1.2
2,021,132	+		IAI47_09560	0.63	-1.2
2,021,132	+		IAI47_09560	0.63	-0.2
2,021,133	-		IAI47_09560	0.63	+1.8
2,021,133	-		IAI47_09560	0.63	+1.0
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2,021,214	+		IAI47_09560	0.72	-0.8
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2,021,241	+				+0.2
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