Strain Fitness in Pantoea sp. MT58 around IAI47_09185

Experiment: Ying_Others16 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_09180 and IAI47_09185 are separated by 14 nucleotidesIAI47_09185 and IAI47_09190 overlap by 1 nucleotides IAI47_09180: IAI47_09180 - anthranilate phosphoribosyltransferase, at 1,934,167 to 1,935,165 _09180 IAI47_09185: IAI47_09185 - glutamine amidotransferase, at 1,935,180 to 1,935,761 _09185 IAI47_09190: IAI47_09190 - anthranilate synthase component 1, at 1,935,761 to 1,937,326 _09190 Position (kb) 1935 1936Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1934.201 kb on + strandat 1934.201 kb on + strandat 1934.202 kb on - strandat 1934.202 kb on - strandat 1934.202 kb on - strandat 1934.202 kb on - strandat 1934.202 kb on - strandat 1934.226 kb on + strandat 1934.226 kb on + strandat 1934.227 kb on - strandat 1934.270 kb on - strand, within IAI47_09180at 1934.270 kb on - strand, within IAI47_09180at 1934.274 kb on + strand, within IAI47_09180at 1934.274 kb on + strand, within IAI47_09180at 1934.274 kb on + strand, within IAI47_09180at 1934.275 kb on - strand, within IAI47_09180at 1934.275 kb on - strand, within IAI47_09180at 1934.328 kb on + strand, within IAI47_09180at 1934.329 kb on - strand, within IAI47_09180at 1934.338 kb on + strand, within IAI47_09180at 1934.338 kb on + strand, within IAI47_09180at 1934.339 kb on - strand, within IAI47_09180at 1934.339 kb on - strand, within IAI47_09180at 1934.339 kb on - strand, within IAI47_09180at 1934.339 kb on - strand, within IAI47_09180at 1934.435 kb on + strand, within IAI47_09180at 1934.534 kb on + strand, within IAI47_09180at 1934.535 kb on - strand, within IAI47_09180at 1934.583 kb on + strand, within IAI47_09180at 1934.584 kb on - strand, within IAI47_09180at 1934.584 kb on - strand, within IAI47_09180at 1934.584 kb on - strand, within IAI47_09180at 1934.585 kb on + strand, within IAI47_09180at 1934.585 kb on + strand, within IAI47_09180at 1934.585 kb on + strand, within IAI47_09180at 1934.586 kb on - strand, within IAI47_09180at 1934.586 kb on - strand, within IAI47_09180at 1934.597 kb on - strand, within IAI47_09180at 1934.635 kb on + strand, within IAI47_09180at 1934.643 kb on + strand, within IAI47_09180at 1934.643 kb on + strand, within IAI47_09180at 1934.643 kb on + strand, within IAI47_09180at 1934.643 kb on + strand, within IAI47_09180at 1934.643 kb on + strand, within IAI47_09180at 1934.644 kb on - strand, within IAI47_09180at 1934.644 kb on - strand, within IAI47_09180at 1934.644 kb on - strand, within IAI47_09180at 1934.647 kb on + strand, within IAI47_09180at 1934.647 kb on + strand, within IAI47_09180at 1934.648 kb on - strand, within IAI47_09180at 1934.648 kb on - strand, within IAI47_09180at 1934.653 kb on - strand, within IAI47_09180at 1934.653 kb on - strand, within IAI47_09180at 1934.706 kb on - strand, within IAI47_09180at 1934.772 kb on + strand, within IAI47_09180at 1934.772 kb on + strand, within IAI47_09180at 1934.772 kb on + strand, within IAI47_09180at 1934.773 kb on - strand, within IAI47_09180at 1934.773 kb on - strand, within IAI47_09180at 1934.781 kb on + strand, within IAI47_09180at 1934.781 kb on + strand, within IAI47_09180at 1934.781 kb on + strand, within IAI47_09180at 1934.782 kb on - strand, within IAI47_09180at 1934.782 kb on - strand, within IAI47_09180at 1934.782 kb on - strand, within IAI47_09180at 1934.785 kb on - strand, within IAI47_09180at 1934.785 kb on - strand, within IAI47_09180at 1934.898 kb on + strand, within IAI47_09180at 1934.898 kb on + strand, within IAI47_09180at 1934.899 kb on - strand, within IAI47_09180at 1934.899 kb on - strand, within IAI47_09180at 1934.901 kb on + strand, within IAI47_09180at 1934.901 kb on + strand, within IAI47_09180at 1934.901 kb on + strand, within IAI47_09180at 1934.901 kb on + strand, within IAI47_09180at 1934.901 kb on + strand, within IAI47_09180at 1934.901 kb on + strand, within IAI47_09180at 1934.901 kb on + strand, within IAI47_09180at 1934.902 kb on - strand, within IAI47_09180at 1934.902 kb on - strand, within IAI47_09180at 1934.902 kb on - strand, within IAI47_09180at 1934.911 kb on - strand, within IAI47_09180at 1934.911 kb on - strand, within IAI47_09180at 1934.911 kb on - strand, within IAI47_09180at 1935.031 kb on + strand, within IAI47_09180at 1935.031 kb on + strand, within IAI47_09180at 1935.087 kb on + strandat 1935.087 kb on + strandat 1935.087 kb on + strandat 1935.087 kb on + strandat 1935.087 kb on + strandat 1935.087 kb on + strandat 1935.088 kb on - strandat 1935.088 kb on - strandat 1935.088 kb on - strandat 1935.088 kb on - strandat 1935.140 kb on + strandat 1935.169 kb on + strandat 1935.182 kb on - strandat 1935.313 kb on + strand, within IAI47_09185at 1935.314 kb on - strand, within IAI47_09185at 1935.389 kb on + strand, within IAI47_09185at 1935.390 kb on - strand, within IAI47_09185at 1935.481 kb on + strand, within IAI47_09185at 1935.481 kb on + strand, within IAI47_09185at 1935.516 kb on - strand, within IAI47_09185at 1935.516 kb on - strand, within IAI47_09185at 1935.521 kb on + strand, within IAI47_09185at 1935.522 kb on - strand, within IAI47_09185at 1935.522 kb on - strand, within IAI47_09185at 1935.563 kb on + strand, within IAI47_09185at 1935.564 kb on - strand, within IAI47_09185at 1935.564 kb on - strand, within IAI47_09185at 1935.643 kb on - strand, within IAI47_09185at 1935.643 kb on - strand, within IAI47_09185at 1935.716 kb on + strandat 1935.716 kb on + strandat 1935.717 kb on - strandat 1935.717 kb on - strandat 1935.717 kb on - strandat 1935.718 kb on + strandat 1935.718 kb on + strandat 1935.719 kb on - strandat 1935.719 kb on - strandat 1935.719 kb on - strandat 1935.719 kb on - strandat 1935.722 kb on + strandat 1935.722 kb on + strandat 1935.723 kb on - strandat 1935.753 kb on - strandat 1935.853 kb on + strandat 1935.853 kb on + strandat 1935.854 kb on - strandat 1935.923 kb on - strand, within IAI47_09190at 1935.923 kb on - strand, within IAI47_09190at 1935.928 kb on + strand, within IAI47_09190at 1935.928 kb on + strand, within IAI47_09190at 1935.929 kb on - strand, within IAI47_09190at 1935.929 kb on - strand, within IAI47_09190at 1935.929 kb on - strand, within IAI47_09190at 1935.929 kb on - strand, within IAI47_09190at 1935.929 kb on - strand, within IAI47_09190at 1935.934 kb on + strand, within IAI47_09190at 1935.960 kb on + strand, within IAI47_09190at 1935.961 kb on - strand, within IAI47_09190at 1935.961 kb on - strand, within IAI47_09190at 1935.961 kb on - strand, within IAI47_09190at 1935.961 kb on - strand, within IAI47_09190at 1935.978 kb on + strand, within IAI47_09190at 1936.046 kb on + strand, within IAI47_09190at 1936.046 kb on + strand, within IAI47_09190at 1936.046 kb on + strand, within IAI47_09190at 1936.063 kb on + strand, within IAI47_09190at 1936.063 kb on + strand, within IAI47_09190at 1936.063 kb on + strand, within IAI47_09190at 1936.063 kb on + strand, within IAI47_09190at 1936.064 kb on - strand, within IAI47_09190at 1936.064 kb on - strand, within IAI47_09190at 1936.064 kb on - strand, within IAI47_09190at 1936.064 kb on - strand, within IAI47_09190at 1936.064 kb on - strand, within IAI47_09190at 1936.064 kb on - strand, within IAI47_09190at 1936.146 kb on + strand, within IAI47_09190at 1936.147 kb on - strand, within IAI47_09190at 1936.176 kb on + strand, within IAI47_09190at 1936.176 kb on + strand, within IAI47_09190at 1936.177 kb on - strand, within IAI47_09190at 1936.177 kb on - strandat 1936.255 kb on + strand, within IAI47_09190at 1936.255 kb on + strand, within IAI47_09190at 1936.255 kb on + strand, within IAI47_09190at 1936.256 kb on - strand, within IAI47_09190at 1936.383 kb on + strand, within IAI47_09190at 1936.383 kb on + strand, within IAI47_09190at 1936.449 kb on + strand, within IAI47_09190at 1936.449 kb on + strand, within IAI47_09190at 1936.449 kb on + strand, within IAI47_09190at 1936.450 kb on - strand, within IAI47_09190at 1936.450 kb on - strand, within IAI47_09190at 1936.483 kb on - strand, within IAI47_09190at 1936.590 kb on + strand, within IAI47_09190at 1936.591 kb on - strand, within IAI47_09190

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
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1,934,201 + -2.8
1,934,201 + -1.8
1,934,202 - -2.4
1,934,202 - -3.7
1,934,202 - -3.4
1,934,202 - -2.1
1,934,202 - -3.1
1,934,226 + -0.8
1,934,226 + -2.1
1,934,227 - -3.8
1,934,270 - IAI47_09180 0.10 -3.2
1,934,270 - IAI47_09180 0.10 +0.2
1,934,274 + IAI47_09180 0.11 -4.2
1,934,274 + IAI47_09180 0.11 -3.4
1,934,274 + IAI47_09180 0.11 -1.8
1,934,275 - IAI47_09180 0.11 -1.4
1,934,275 - IAI47_09180 0.11 -4.1
1,934,328 + IAI47_09180 0.16 -3.5
1,934,329 - IAI47_09180 0.16 -3.0
1,934,338 + IAI47_09180 0.17 -3.2
1,934,338 + IAI47_09180 0.17 -3.1
1,934,339 - IAI47_09180 0.17 -4.3
1,934,339 - IAI47_09180 0.17 -1.4
1,934,339 - IAI47_09180 0.17 -2.9
1,934,339 - IAI47_09180 0.17 -1.8
1,934,435 + IAI47_09180 0.27 -2.4
1,934,534 + IAI47_09180 0.37 -2.8
1,934,535 - IAI47_09180 0.37 -2.9
1,934,583 + IAI47_09180 0.42 -3.8
1,934,584 - IAI47_09180 0.42 -0.8
1,934,584 - IAI47_09180 0.42 -4.1
1,934,584 - IAI47_09180 0.42 -4.4
1,934,585 + IAI47_09180 0.42 -3.5
1,934,585 + IAI47_09180 0.42 -1.8
1,934,585 + IAI47_09180 0.42 -2.1
1,934,586 - IAI47_09180 0.42 -3.7
1,934,586 - IAI47_09180 0.42 -3.5
1,934,597 - IAI47_09180 0.43 -1.6
1,934,635 + IAI47_09180 0.47 -3.2
1,934,643 + IAI47_09180 0.48 -2.6
1,934,643 + IAI47_09180 0.48 -0.8
1,934,643 + IAI47_09180 0.48 -3.1
1,934,643 + IAI47_09180 0.48 -2.9
1,934,643 + IAI47_09180 0.48 -0.8
1,934,644 - IAI47_09180 0.48 -4.2
1,934,644 - IAI47_09180 0.48 -0.8
1,934,644 - IAI47_09180 0.48 -2.6
1,934,647 + IAI47_09180 0.48 -4.5
1,934,647 + IAI47_09180 0.48 -2.2
1,934,648 - IAI47_09180 0.48 -3.5
1,934,648 - IAI47_09180 0.48 -1.4
1,934,653 - IAI47_09180 0.49 -3.7
1,934,653 - IAI47_09180 0.49 -2.9
1,934,706 - IAI47_09180 0.54 -2.6
1,934,772 + IAI47_09180 0.61 -1.4
1,934,772 + IAI47_09180 0.61 -4.4
1,934,772 + IAI47_09180 0.61 -3.2
1,934,773 - IAI47_09180 0.61 +0.2
1,934,773 - IAI47_09180 0.61 -2.6
1,934,781 + IAI47_09180 0.61 -2.9
1,934,781 + IAI47_09180 0.61 -4.2
1,934,781 + IAI47_09180 0.61 -3.4
1,934,782 - IAI47_09180 0.62 -1.4
1,934,782 - IAI47_09180 0.62 -1.8
1,934,782 - IAI47_09180 0.62 -2.1
1,934,785 - IAI47_09180 0.62 -2.1
1,934,785 - IAI47_09180 0.62 -3.5
1,934,898 + IAI47_09180 0.73 -2.9
1,934,898 + IAI47_09180 0.73 -3.8
1,934,899 - IAI47_09180 0.73 -4.4
1,934,899 - IAI47_09180 0.73 -2.9
1,934,901 + IAI47_09180 0.73 -2.4
1,934,901 + IAI47_09180 0.73 -2.9
1,934,901 + IAI47_09180 0.73 -2.4
1,934,901 + IAI47_09180 0.73 -2.4
1,934,901 + IAI47_09180 0.73 -3.8
1,934,901 + IAI47_09180 0.73 -2.8
1,934,901 + IAI47_09180 0.73 -2.4
1,934,902 - IAI47_09180 0.74 -3.5
1,934,902 - IAI47_09180 0.74 -2.4
1,934,902 - IAI47_09180 0.74 -2.4
1,934,911 - IAI47_09180 0.74 -3.4
1,934,911 - IAI47_09180 0.74 +0.2
1,934,911 - IAI47_09180 0.74 -3.7
1,935,031 + IAI47_09180 0.86 -3.5
1,935,031 + IAI47_09180 0.86 -2.9
1,935,087 + -2.6
1,935,087 + -2.3
1,935,087 + -2.3
1,935,087 + -4.2
1,935,087 + -0.8
1,935,087 + -1.8
1,935,088 - -3.6
1,935,088 - -0.8
1,935,088 - -2.3
1,935,088 - -3.1
1,935,140 + -2.9
1,935,169 + -3.2
1,935,182 - -2.3
1,935,313 + IAI47_09185 0.23 -2.6
1,935,314 - IAI47_09185 0.23 -0.4
1,935,389 + IAI47_09185 0.36 -1.8
1,935,390 - IAI47_09185 0.36 -2.1
1,935,481 + IAI47_09185 0.52 -2.3
1,935,481 + IAI47_09185 0.52 -1.3
1,935,516 - IAI47_09185 0.58 -3.1
1,935,516 - IAI47_09185 0.58 +1.8
1,935,521 + IAI47_09185 0.59 -2.9
1,935,522 - IAI47_09185 0.59 -1.6
1,935,522 - IAI47_09185 0.59 -1.0
1,935,563 + IAI47_09185 0.66 -3.2
1,935,564 - IAI47_09185 0.66 +0.2
1,935,564 - IAI47_09185 0.66 -0.8
1,935,643 - IAI47_09185 0.80 -1.9
1,935,643 - IAI47_09185 0.80 -1.2
1,935,716 + -3.5
1,935,716 + -1.8
1,935,717 - -0.6
1,935,717 - +1.2
1,935,717 - -1.1
1,935,718 + -2.3
1,935,718 + -2.1
1,935,719 - -2.3
1,935,719 - -1.8
1,935,719 - +0.2
1,935,719 - -1.6
1,935,722 + -3.9
1,935,722 + -3.1
1,935,723 - -3.7
1,935,753 - -0.8
1,935,853 + -3.9
1,935,853 + -0.8
1,935,854 - -3.2
1,935,923 - IAI47_09190 0.10 -1.8
1,935,923 - IAI47_09190 0.10 -3.1
1,935,928 + IAI47_09190 0.11 -2.3
1,935,928 + IAI47_09190 0.11 -2.6
1,935,929 - IAI47_09190 0.11 -1.8
1,935,929 - IAI47_09190 0.11 -3.3
1,935,929 - IAI47_09190 0.11 -1.8
1,935,929 - IAI47_09190 0.11 -2.3
1,935,929 - IAI47_09190 0.11 -3.5
1,935,934 + IAI47_09190 0.11 -3.1
1,935,960 + IAI47_09190 0.13 -3.6
1,935,961 - IAI47_09190 0.13 -3.9
1,935,961 - IAI47_09190 0.13 -3.9
1,935,961 - IAI47_09190 0.13 -1.3
1,935,961 - IAI47_09190 0.13 -2.3
1,935,978 + IAI47_09190 0.14 -2.6
1,936,046 + IAI47_09190 0.18 -3.1
1,936,046 + IAI47_09190 0.18 -1.8
1,936,046 + IAI47_09190 0.18 -2.3
1,936,063 + IAI47_09190 0.19 -2.3
1,936,063 + IAI47_09190 0.19 -4.5
1,936,063 + IAI47_09190 0.19 -3.7
1,936,063 + IAI47_09190 0.19 -4.8
1,936,064 - IAI47_09190 0.19 -3.7
1,936,064 - IAI47_09190 0.19 -4.5
1,936,064 - IAI47_09190 0.19 -3.2
1,936,064 - IAI47_09190 0.19 -3.1
1,936,064 - IAI47_09190 0.19 -4.1
1,936,064 - IAI47_09190 0.19 -1.3
1,936,146 + IAI47_09190 0.25 -2.9
1,936,147 - IAI47_09190 0.25 -2.5
1,936,176 + IAI47_09190 0.27 -3.8
1,936,176 + IAI47_09190 0.27 -2.9
1,936,177 - IAI47_09190 0.27 -1.3
1,936,177 - -1.3
1,936,255 + IAI47_09190 0.32 -1.3
1,936,255 + IAI47_09190 0.32 -2.9
1,936,255 + IAI47_09190 0.32 -2.1
1,936,256 - IAI47_09190 0.32 -4.3
1,936,383 + IAI47_09190 0.40 -3.5
1,936,383 + IAI47_09190 0.40 -2.8
1,936,449 + IAI47_09190 0.44 -2.6
1,936,449 + IAI47_09190 0.44 -3.3
1,936,449 + IAI47_09190 0.44 -3.2
1,936,450 - IAI47_09190 0.44 -3.2
1,936,450 - IAI47_09190 0.44 -4.2
1,936,483 - IAI47_09190 0.46 -3.6
1,936,590 + IAI47_09190 0.53 -1.3
1,936,591 - IAI47_09190 0.53 -4.3

Or see this region's nucleotide sequence