Strain Fitness in Pantoea sp. MT58 around IAI47_08700

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
1,839,034	+		IAI47_08690	0.86	-0.3
1,839,034	+		IAI47_08690	0.86	+0.2
1,839,079	+				+0.5
1,839,080	-				+2.6
1,839,187	+				-0.0
1,839,187	+				+0.7
1,839,188	-				-0.3
1,839,232	+				+0.7
1,839,233	-				-0.5
1,839,233	-				+1.2
1,839,233	-				+1.2
1,839,233	-				+0.4
1,839,233	-				-0.8
1,839,233	-				-1.1
1,839,233	-				-0.8
1,839,239	+				+0.5
1,839,240	-				-0.1
1,839,249	+				-1.0
1,839,249	+				+0.7
1,839,250	-				-1.2
1,839,303	+				-0.6
1,839,303	+				+1.8
1,839,304	-				+0.2
1,839,304	-				+0.7
1,839,304	-				+0.6
1,839,304	-				-1.3
1,839,304	-				+1.0
1,839,309	+				-1.8
1,839,309	+				+0.2
1,839,309	+				+0.2
1,839,309	+				-0.8
1,839,310	-				+0.4
1,839,311	+				-0.8
1,839,311	+				+0.8
1,839,311	+				-1.8
1,839,311	+				+0.0
1,839,312	-				+0.8
1,839,312	-				+0.8
1,839,318	+				-0.2
1,839,318	+				+0.6
1,839,318	+				+0.3
1,839,318	+				+0.2
1,839,318	+				+1.2
1,839,319	-				+0.2
1,839,319	-				+1.6
1,839,319	-				+0.2
1,839,319	-				+2.2
1,839,319	-				-0.3
1,839,319	-				+0.5
1,839,319	-				-0.4
1,839,319	-				+0.0
1,839,319	-				+0.2
1,839,319	-				+0.1
1,839,324	+				-0.9
1,839,324	+				+0.2
1,839,324	+				-0.3
1,839,325	-				-0.8
1,839,348	+				-0.9
1,839,348	+				+1.2
1,839,353	-				+0.0
1,839,379	+				-0.6
1,839,380	-				+1.0
1,839,380	-				+0.2
1,839,380	-				+0.8
1,839,380	-				+1.1
1,839,380	-				-0.8
1,839,388	+				-0.2
1,839,388	+				+0.0
1,839,388	+				-0.6
1,839,389	-				+0.6
1,839,389	-				-0.4
1,839,389	-				-0.8
1,839,389	-				+3.3
1,839,389	-				+0.5
1,839,389	-				-0.0
1,839,403	+				+1.6
1,839,434	+				-0.3
1,839,434	+				-0.3
1,839,434	+				+0.2
1,839,434	+				+1.0
1,839,454	+				+0.2
1,839,455	-				+0.2
1,839,521	+		IAI47_08695	0.21	+0.1
1,839,521	+		IAI47_08695	0.21	+3.2
1,839,521	+		IAI47_08695	0.21	-0.6
1,839,521	+		IAI47_08695	0.21	+0.1
1,839,521	+		IAI47_08695	0.21	+0.7
1,839,521	+		IAI47_08695	0.21	+0.3
1,839,521	+		IAI47_08695	0.21	-0.6
1,839,521	+		IAI47_08695	0.21	-0.6
1,839,522	-		IAI47_08695	0.21	+0.5
1,839,522	-		IAI47_08695	0.21	-0.3
1,839,522	-		IAI47_08695	0.21	-1.0
1,839,522	-		IAI47_08695	0.21	+0.2
1,839,522	-		IAI47_08695	0.21	+2.0
1,839,522	-		IAI47_08695	0.21	-0.2
1,839,557	+		IAI47_08695	0.28	-0.1
1,839,557	+		IAI47_08695	0.28	-0.1
1,839,557	+		IAI47_08695	0.28	+1.2
1,839,558	-		IAI47_08695	0.28	-0.3
1,839,803	+		IAI47_08695	0.77	+1.4
1,839,803	+		IAI47_08695	0.77	+0.5
1,839,803	+		IAI47_08695	0.77	+0.2
1,839,803	+		IAI47_08695	0.77	-0.0
1,839,803	+		IAI47_08695	0.77	+1.0
1,839,803	+		IAI47_08695	0.77	+0.2
1,839,803	+		IAI47_08695	0.77	-0.2
1,839,803	+		IAI47_08695	0.77	+0.7
1,839,804	-		IAI47_08695	0.77	-1.5
1,839,804	-		IAI47_08695	0.77	+0.1
1,839,804	-		IAI47_08695	0.77	+0.6
1,839,804	-		IAI47_08695	0.77	-0.9
1,839,804	-		IAI47_08695	0.77	+0.2
1,839,804	-		IAI47_08695	0.77	+0.9
1,839,885	+				-0.4
1,839,893	+				-0.8
1,839,915	-				+0.8
1,839,938	+				+0.3
1,839,953	+				+0.1
1,839,953	+				-1.1
1,839,953	+				-0.9
1,839,954	-				-1.3
1,839,954	-				-2.6
1,839,954	-				-0.6
1,839,955	+				+0.2
1,839,955	+				+0.8
1,839,955	+				-0.3
1,839,955	+				+1.0
1,839,955	+				-1.2
1,839,955	+				-0.1
1,839,955	+				-0.0
1,839,956	-				-2.6
1,839,956	-				-2.1
1,839,956	-				-1.5
1,839,956	-				-1.3
1,839,998	+				+0.9
1,839,998	+				+0.1
1,839,998	+				-0.8
1,839,998	+				-0.8
1,840,027	+				-1.9
1,840,027	+				-1.2
1,840,027	+				-0.3
1,840,027	+				-3.1
1,840,036	+				-0.3
1,840,202	+		IAI47_08700	0.27	-1.1
1,840,203	-		IAI47_08700	0.27	-1.3
1,840,203	-		IAI47_08700	0.27	-1.3
1,840,204	+		IAI47_08700	0.27	-2.3
1,840,204	+		IAI47_08700	0.27	-2.8
1,840,204	+		IAI47_08700	0.27	-2.6
1,840,204	+		IAI47_08700	0.27	+1.0
1,840,205	-		IAI47_08700	0.27	-1.8
1,840,205	-		IAI47_08700	0.27	-2.1
1,840,226	+		IAI47_08700	0.30	-1.9
1,840,226	+		IAI47_08700	0.30	-0.8
1,840,299	+		IAI47_08700	0.41	-1.3
1,840,300	-		IAI47_08700	0.41	-1.3
1,840,438	+		IAI47_08700	0.60	-0.8
1,840,438	+		IAI47_08700	0.60	-3.1
1,840,438	+		IAI47_08700	0.60	-1.3
1,840,465	+		IAI47_08700	0.64	-1.5
1,840,564	+		IAI47_08700	0.78	-1.1
1,840,565	-		IAI47_08700	0.78	-2.1
1,840,591	+		IAI47_08700	0.82	-2.6
1,840,591	+		IAI47_08700	0.82	+0.4
1,840,592	-		IAI47_08700	0.82	-0.3
1,840,592	-		IAI47_08700	0.82	-2.6
1,840,594	+		IAI47_08700	0.82	-2.3
1,840,594	+		IAI47_08700	0.82	-0.5
1,840,595	-		IAI47_08700	0.83	-0.2
1,840,595	-		IAI47_08700	0.83	-3.6
1,840,595	-		IAI47_08700	0.83	-1.3
1,840,600	+		IAI47_08700	0.83	-1.3
1,840,600	+		IAI47_08700	0.83	+0.0
1,840,601	-				-0.2
1,840,641	+		IAI47_08700	0.89	-1.6
1,840,642	-		IAI47_08700	0.89	-1.2
1,840,763	+				-2.9
1,840,763	+				-2.1
1,840,763	+				-2.8
1,840,764	-				-2.1
1,840,777	+				-2.6
1,840,777	+				-2.6
1,840,777	+				-2.6
1,840,777	+				-1.1
1,840,778	-				-2.8
1,840,780	+				-2.3
1,840,780	+				-2.1
1,840,781	-				-2.3
1,840,811	+				-2.1
1,840,811	+				-1.3
1,840,812	-				-3.6
1,840,812	-				-1.8
1,840,812	-				-2.3
1,841,075	+		IAI47_08705	0.17	-0.8
1,841,075	+		IAI47_08705	0.17	-1.3
1,841,079	+		IAI47_08705	0.17	-2.6
1,841,079	+		IAI47_08705	0.17	-2.8
1,841,080	-		IAI47_08705	0.17	-2.6
1,841,082	-		IAI47_08705	0.17	-3.2
1,841,118	+		IAI47_08705	0.19	+0.2
1,841,119	-		IAI47_08705	0.19	-1.8
1,841,168	+		IAI47_08705	0.21	-0.8
1,841,218	+		IAI47_08705	0.24	-2.3
1,841,243	+		IAI47_08705	0.25	-2.3
1,841,244	-		IAI47_08705	0.25	-1.3
1,841,244	-		IAI47_08705	0.25	-1.8
1,841,244	-		IAI47_08705	0.25	-3.2
1,841,244	-		IAI47_08705	0.25	-2.8
1,841,244	-		IAI47_08705	0.25	-1.8
1,841,247	+		IAI47_08705	0.25	-2.1
1,841,247	+		IAI47_08705	0.25	-2.8
1,841,247	+		IAI47_08705	0.25	-1.3
1,841,248	-		IAI47_08705	0.25	+0.2
1,841,248	-		IAI47_08705	0.25	-5.1
1,841,248	-		IAI47_08705	0.25	-1.3
1,841,249	-		IAI47_08705	0.25	+1.2
1,841,309	+		IAI47_08705	0.28	-1.3
1,841,309	+		IAI47_08705	0.28	-2.6
1,841,317	-		IAI47_08705	0.28	-2.6
1,841,415	+		IAI47_08705	0.33	-2.6
1,841,415	+		IAI47_08705	0.33	-2.3
1,841,415	+		IAI47_08705	0.33	-1.3
1,841,415	+		IAI47_08705	0.33	-2.5
1,841,415	+		IAI47_08705	0.33	-2.9
1,841,415	+		IAI47_08705	0.33	-1.3
1,841,415	+		IAI47_08705	0.33	-2.6
1,841,415	+		IAI47_08705	0.33	-1.8
1,841,416	-		IAI47_08705	0.33	+0.2
1,841,416	-		IAI47_08705	0.33	-0.8
1,841,505	+		IAI47_08705	0.38	-2.3
1,841,505	+		IAI47_08705	0.38	-2.1
1,841,506	-		IAI47_08705	0.38	-1.3
1,841,506	-		IAI47_08705	0.38	-2.9
1,841,506	-		IAI47_08705	0.38	-1.6
1,841,506	-		IAI47_08705	0.38	+0.2
1,841,664	-		IAI47_08705	0.45	-2.8