Strain Fitness in Pantoea sp. MT58 around IAI47_07575

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
1,600,961	-				-1.0
1,600,961	-				+0.4
1,600,964	-				-0.1
1,601,117	+				+0.1
1,601,117	+				+0.5
1,601,117	+				-0.4
1,601,131	+				+1.8
1,601,131	+				-1.7
1,601,145	-				-1.3
1,601,160	-				-1.0
1,601,160	-				-0.3
1,601,166	+				-0.4
1,601,166	+				-1.2
1,601,166	+				+0.1
1,601,166	+				+3.1
1,601,167	-				-0.1
1,601,167	-				-0.0
1,601,178	+				-0.5
1,601,178	+				-1.1
1,601,178	+				+1.0
1,601,179	-				+0.3
1,601,179	-				-2.3
1,601,179	-				-1.7
1,601,179	-				+0.5
1,601,216	+				-0.2
1,601,217	-				+0.5
1,601,244	-				-1.0
1,601,244	-				-0.1
1,601,244	-				+0.5
1,601,495	+				-2.1
1,601,711	-				+0.3
1,601,720	+				+1.5
1,601,720	+				+0.3
1,601,720	+				-1.1
1,601,721	-				+0.4
1,601,721	-				-0.7
1,601,739	+				-0.2
1,601,739	+				+0.9
1,601,739	+				-1.0
1,601,740	-				-1.5
1,601,753	+				+0.8
1,601,779	-				-0.3
1,601,811	+				+2.3
1,601,812	-				-0.3
1,601,829	+				+0.7
1,601,829	+				+0.3
1,601,832	+				-1.3
1,601,832	+				+1.3
1,601,832	+				+0.7
1,601,832	+				+2.3
1,601,832	+				-0.2
1,601,832	+				+0.1
1,601,832	+				-0.6
1,601,832	+				-0.5
1,601,832	+				+0.5
1,601,833	-				+0.5
1,601,833	-				-0.0
1,601,833	-				+0.1
1,601,833	-				+0.3
1,601,833	-				-0.5
1,601,833	-				-0.6
1,601,841	+				+0.6
1,601,841	+				+0.2
1,601,842	-				-0.3
1,601,842	-				+0.7
1,601,842	-				+0.4
1,601,908	-		IAI47_07575	0.15	-0.2
1,601,999	+		IAI47_07575	0.25	+1.1
1,601,999	+		IAI47_07575	0.25	+0.3
1,602,000	-		IAI47_07575	0.25	-0.6
1,602,000	-		IAI47_07575	0.25	+0.3
1,602,022	-		IAI47_07575	0.27	+1.0
1,602,022	-		IAI47_07575	0.27	+0.2
1,602,022	-				+0.3
1,602,022	-		IAI47_07575	0.27	+0.1
1,602,049	-		IAI47_07575	0.30	-0.1
1,602,063	+		IAI47_07575	0.31	-0.1
1,602,063	+		IAI47_07575	0.31	+2.1
1,602,063	+		IAI47_07575	0.31	+1.1
1,602,063	+		IAI47_07575	0.31	-1.5
1,602,064	-		IAI47_07575	0.32	+0.7
1,602,064	-		IAI47_07575	0.32	+0.7
1,602,064	-		IAI47_07575	0.32	+0.1
1,602,077	-		IAI47_07575	0.33	-0.7
1,602,077	-		IAI47_07575	0.33	+0.3
1,602,077	-		IAI47_07575	0.33	-1.9
1,602,096	+		IAI47_07575	0.35	-0.3
1,602,097	-		IAI47_07575	0.35	+1.2
1,602,097	-		IAI47_07575	0.35	-0.1
1,602,192	+		IAI47_07575	0.45	-1.5
1,602,192	+		IAI47_07575	0.45	-0.3
1,602,192	+		IAI47_07575	0.45	+0.6
1,602,197	+		IAI47_07575	0.45	+1.3
1,602,222	+		IAI47_07575	0.48	+0.4
1,602,222	+		IAI47_07575	0.48	-0.2
1,602,222	+		IAI47_07575	0.48	-1.3
1,602,222	+		IAI47_07575	0.48	-2.1
1,602,222	+		IAI47_07575	0.48	+0.6
1,602,223	-		IAI47_07575	0.48	+0.3
1,602,223	-		IAI47_07575	0.48	+1.3
1,602,321	+		IAI47_07575	0.58	-0.0
1,602,322	-		IAI47_07575	0.58	+0.5
1,602,322	-		IAI47_07575	0.58	+0.3
1,602,322	-		IAI47_07575	0.58	-0.0
1,602,322	-		IAI47_07575	0.58	+2.4
1,602,350	-		IAI47_07575	0.61	-0.5
1,602,447	-		IAI47_07575	0.71	+0.7
1,602,447	-		IAI47_07575	0.71	-1.3
1,602,457	+		IAI47_07575	0.72	+0.9
1,602,458	-		IAI47_07575	0.73	-1.6
1,602,461	+		IAI47_07575	0.73	+0.4
1,602,461	+		IAI47_07575	0.73	-0.1
1,602,462	-		IAI47_07575	0.73	+1.6
1,602,569	+		IAI47_07575	0.84	-1.1
1,602,570	-		IAI47_07575	0.84	+1.8
1,602,570	-		IAI47_07575	0.84	-0.0
1,602,603	+		IAI47_07575	0.88	+0.1
1,602,603	+		IAI47_07575	0.88	+1.5
1,602,604	-		IAI47_07575	0.88	+0.7
1,602,604	-		IAI47_07575	0.88	+0.7
1,602,604	-		IAI47_07575	0.88	+1.3
1,602,604	-		IAI47_07575	0.88	+1.1
1,602,607	+		IAI47_07575	0.88	-0.7
1,602,607	+		IAI47_07575	0.88	-0.7
1,602,607	+		IAI47_07575	0.88	-0.4
1,602,607	+		IAI47_07575	0.88	+0.3
1,602,607	+		IAI47_07575	0.88	-0.4
1,602,607	+		IAI47_07575	0.88	+0.3
1,602,608	-		IAI47_07575	0.88	-1.0
1,602,608	-		IAI47_07575	0.88	+1.3
1,602,608	-		IAI47_07575	0.88	-0.2
1,602,608	-		IAI47_07575	0.88	-0.7
1,602,679	+				+1.3
1,602,680	-				-0.6
1,602,718	+				+0.8
1,602,719	-				-0.3
1,602,719	-				-0.7
1,602,753	+				+0.7
1,602,764	+				+1.8
1,602,846	+				+0.9
1,602,857	+				+0.3
1,602,857	+				-0.4
1,602,858	-				+0.5
1,602,858	-				+0.3
1,602,878	+				+3.1
1,602,878	+				+0.1
1,602,878	+				-0.6
1,602,878	+				-0.3
1,602,878	+				+0.5
1,602,878	+				+1.1
1,602,878	+				-0.3
1,602,878	+				-0.7
1,602,878	+				-0.6
1,602,878	+				-0.4
1,602,878	+				-0.4
1,602,878	+				+1.6
1,602,878	+				-0.2
1,602,879	-				-0.4
1,602,879	-				+0.1
1,602,879	-				-1.7
1,602,879	-				-0.4
1,602,879	-				+0.4
1,602,879	-				+2.0
1,602,879	-				+0.3
1,602,879	-				+1.8
1,602,879	-				+1.3
1,602,879	-				-0.1
1,602,879	-				+0.6
1,602,879	-				+0.0
1,602,879	-				+0.9
1,602,879	-				+0.8
1,602,890	-				+0.8
1,602,890	-				-0.9
1,602,896	+				+0.5
1,602,897	-				+1.3
1,602,897	-				+0.1
1,602,903	-				-0.7
1,603,049	-		IAI47_07580	0.12	-0.2
1,603,049	-		IAI47_07580	0.12	+0.5
1,603,053	+		IAI47_07580	0.12	-0.2
1,603,053	+		IAI47_07580	0.12	+0.1
1,603,053	+		IAI47_07580	0.12	+0.1
1,603,053	+		IAI47_07580	0.12	+1.0
1,603,053	+		IAI47_07580	0.12	-0.3
1,603,053	+		IAI47_07580	0.12	+0.3
1,603,053	+		IAI47_07580	0.12	-0.7
1,603,053	+		IAI47_07580	0.12	-0.3
1,603,053	+		IAI47_07580	0.12	+0.5
1,603,054	-		IAI47_07580	0.12	-1.3
1,603,054	-		IAI47_07580	0.12	+0.1
1,603,054	-		IAI47_07580	0.12	-0.2
1,603,054	-		IAI47_07580	0.12	+0.8
1,603,219	-		IAI47_07580	0.23	+1.8
1,603,343	+		IAI47_07580	0.32	+0.3
1,603,343	+		IAI47_07580	0.32	+0.3
1,603,344	-		IAI47_07580	0.32	-0.5
1,603,344	-		IAI47_07580	0.32	+0.3
1,603,344	-		IAI47_07580	0.32	-0.7
1,603,344	-		IAI47_07580	0.32	+1.8
1,603,346	-		IAI47_07580	0.32	+0.3
1,603,424	+		IAI47_07580	0.37	-0.5
1,603,425	-		IAI47_07580	0.37	-1.3
1,603,510	+		IAI47_07580	0.43	-1.3
1,603,511	-		IAI47_07580	0.43	+0.7
1,603,580	+		IAI47_07580	0.48	-0.6
1,603,633	+		IAI47_07580	0.52	+0.3
1,603,633	+		IAI47_07580	0.52	+0.1
1,603,633	+		IAI47_07580	0.52	-0.4
1,603,633	+		IAI47_07580	0.52	+1.0
1,603,633	+		IAI47_07580	0.52	+1.3
1,603,633	+		IAI47_07580	0.52	+1.8
1,603,633	+		IAI47_07580	0.52	-1.7
1,603,634	-		IAI47_07580	0.52	-0.2
1,603,634	-		IAI47_07580	0.52	+0.1
1,603,634	-		IAI47_07580	0.52	+0.1
1,603,634	-		IAI47_07580	0.52	+0.9
1,603,694	+		IAI47_07580	0.56	-1.5
1,603,694	+		IAI47_07580	0.56	-0.3
1,603,694	+		IAI47_07580	0.56	-0.3
1,603,695	-		IAI47_07580	0.56	+0.6