Strain Fitness in Pantoea sp. MT58 around IAI47_07570

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
1,598,650	+		IAI47_07565	0.49	+0.3
1,598,650	+		IAI47_07565	0.49	-0.1
1,598,651	-		IAI47_07565	0.49	+0.9
1,598,651	-		IAI47_07565	0.49	+0.9
1,598,651	-		IAI47_07565	0.49	-0.6
1,598,653	+		IAI47_07565	0.49	-0.0
1,598,653	+		IAI47_07565	0.49	-0.1
1,598,653	+		IAI47_07565	0.49	+0.9
1,598,653	+		IAI47_07565	0.49	+1.5
1,598,653	+		IAI47_07565	0.49	-0.4
1,598,653	+		IAI47_07565	0.49	-0.5
1,598,653	+		IAI47_07565	0.49	+0.6
1,598,653	+		IAI47_07565	0.49	+0.1
1,598,654	-		IAI47_07565	0.49	+0.3
1,598,654	-		IAI47_07565	0.49	+1.8
1,598,654	-		IAI47_07565	0.49	-0.5
1,598,654	-		IAI47_07565	0.49	-1.1
1,598,654	-		IAI47_07565	0.49	-0.9
1,598,654	-		IAI47_07565	0.49	-1.1
1,598,654	-		IAI47_07565	0.49	+0.5
1,598,654	-		IAI47_07565	0.49	-0.1
1,598,654	-		IAI47_07565	0.49	-0.1
1,598,654	-		IAI47_07565	0.49	+0.9
1,598,654	-		IAI47_07565	0.49	+0.3
1,598,654	-		IAI47_07565	0.49	-1.3
1,598,654	-		IAI47_07565	0.49	+0.5
1,598,654	-		IAI47_07565	0.49	+1.7
1,598,654	-		IAI47_07565	0.49	+2.6
1,598,694	+		IAI47_07565	0.53	-1.1
1,598,772	+		IAI47_07565	0.61	+0.9
1,598,773	-		IAI47_07565	0.61	-1.0
1,598,773	-		IAI47_07565	0.61	+0.7
1,598,773	-		IAI47_07565	0.61	-0.4
1,598,785	-		IAI47_07565	0.62	-0.1
1,598,785	-		IAI47_07565	0.62	+0.3
1,598,785	-		IAI47_07565	0.62	-0.5
1,598,785	-		IAI47_07565	0.62	+0.1
1,598,785	-		IAI47_07565	0.62	+0.9
1,598,788	+		IAI47_07565	0.62	-1.0
1,598,788	+		IAI47_07565	0.62	-0.3
1,598,788	+		IAI47_07565	0.62	+0.6
1,598,788	+		IAI47_07565	0.62	-0.7
1,598,789	-		IAI47_07565	0.62	+2.3
1,598,789	-		IAI47_07565	0.62	-0.5
1,598,789	-		IAI47_07565	0.62	-0.5
1,598,789	-		IAI47_07565	0.62	-0.1
1,598,794	+		IAI47_07565	0.63	-1.7
1,598,795	-		IAI47_07565	0.63	+0.4
1,598,835	+		IAI47_07565	0.67	+0.7
1,598,835	+		IAI47_07565	0.67	-0.1
1,598,838	+		IAI47_07565	0.67	-1.1
1,598,847	+		IAI47_07565	0.68	+0.6
1,598,847	+		IAI47_07565	0.68	+1.2
1,598,847	+		IAI47_07565	0.68	+0.6
1,598,847	+		IAI47_07565	0.68	-0.1
1,598,847	+		IAI47_07565	0.68	+1.3
1,598,847	+		IAI47_07565	0.68	+0.6
1,598,847	+		IAI47_07565	0.68	+0.5
1,598,847	+		IAI47_07565	0.68	+0.4
1,598,847	+		IAI47_07565	0.68	+0.6
1,598,847	+		IAI47_07565	0.68	+0.5
1,598,848	-		IAI47_07565	0.68	+1.3
1,598,848	-		IAI47_07565	0.68	+0.3
1,598,848	-		IAI47_07565	0.68	+0.9
1,598,848	-		IAI47_07565	0.68	+0.9
1,598,848	-		IAI47_07565	0.68	+0.0
1,598,848	-		IAI47_07565	0.68	-1.3
1,598,848	-		IAI47_07565	0.68	-0.7
1,598,851	+		IAI47_07565	0.68	+0.3
1,598,851	+		IAI47_07565	0.68	+1.3
1,598,852	-		IAI47_07565	0.69	+1.1
1,598,852	-		IAI47_07565	0.69	-0.1
1,598,852	-		IAI47_07565	0.69	+0.8
1,598,852	-		IAI47_07565	0.69	-0.1
1,598,866	+		IAI47_07565	0.70	-0.1
1,598,866	+		IAI47_07565	0.70	+0.8
1,598,867	-		IAI47_07565	0.70	-0.3
1,598,953	+		IAI47_07565	0.78	-0.7
1,598,953	+		IAI47_07565	0.78	+0.5
1,598,953	+		IAI47_07565	0.78	-0.7
1,598,953	+		IAI47_07565	0.78	+1.3
1,598,953	+		IAI47_07565	0.78	-0.2
1,598,953	+		IAI47_07565	0.78	-0.2
1,598,954	-		IAI47_07565	0.78	+0.1
1,598,954	-		IAI47_07565	0.78	-0.2
1,599,018	+		IAI47_07565	0.85	-1.0
1,599,033	-		IAI47_07565	0.86	-0.5
1,599,033	-		IAI47_07565	0.86	+0.3
1,599,060	+		IAI47_07565	0.89	-0.5
1,599,060	+		IAI47_07565	0.89	-0.7
1,599,060	+		IAI47_07565	0.89	+0.9
1,599,094	+				+0.9
1,599,094	+				+0.3
1,599,094	+				-0.3
1,599,094	+				-0.7
1,599,094	+				-1.3
1,599,095	-				-0.3
1,599,095	-				+0.7
1,599,095	-				+0.3
1,599,095	-				+0.9
1,599,148	-				+1.3
1,599,220	-				+0.8
1,599,220	-				-0.1
1,599,269	+				-0.3
1,599,270	-				-1.3
1,599,277	+				-0.4
1,599,331	+				-0.5
1,599,331	+				+0.1
1,599,331	+				+0.9
1,599,331	+				+0.4
1,599,332	-				+0.8
1,599,332	-				+0.7
1,599,332	-				+0.7
1,599,347	+				-3.1
1,599,374	+				-0.5
1,599,374	+				+0.9
1,599,374	+				+0.3
1,599,375	-				+0.3
1,599,375	-				+1.1
1,599,375	-				+1.1
1,599,375	-				+1.4
1,599,426	+				+1.0
1,599,426	+				+1.3
1,599,426	+				-0.6
1,599,427	-				+1.7
1,599,427	-				+1.3
1,599,427	-				-0.9
1,599,427	-				+0.9
1,599,427	-				-0.1
1,599,440	-				-1.1
1,599,457	-				+0.6
1,599,460	-				-2.1
1,599,460	-				+0.2
1,599,466	+				+0.1
1,599,466	+				+0.9
1,599,467	-				-0.1
1,599,467	-				+1.9
1,599,467	-				-0.2
1,599,473	+				-0.5
1,599,488	-				-1.1
1,599,488	-				-0.7
1,599,570	+				+0.3
1,599,570	+				-1.1
1,599,570	+				-0.7
1,599,601	+				-0.7
1,599,643	+				-1.1
1,599,644	-				-1.2
1,599,644	-				+0.0
1,599,648	+				+0.5
1,599,648	+				-0.8
1,599,648	+				-0.7
1,599,648	+				-0.1
1,599,649	-				+0.5
1,599,649	-				-0.6
1,599,649	-				+1.4
1,599,649	-				+0.4
1,599,766	+		IAI47_07570	0.15	-0.8
1,599,767	-		IAI47_07570	0.15	-0.5
1,599,820	-		IAI47_07570	0.21	-0.3
1,599,833	+		IAI47_07570	0.22	+1.0
1,599,834	-		IAI47_07570	0.23	-0.3
1,599,836	+		IAI47_07570	0.23	-0.8
1,599,837	-		IAI47_07570	0.23	+0.3
1,599,837	-		IAI47_07570	0.23	+2.1
1,599,837	-		IAI47_07570	0.23	+0.1
1,599,996	+		IAI47_07570	0.40	-0.1
1,599,996	+		IAI47_07570	0.40	-0.5
1,599,996	+		IAI47_07570	0.40	+0.5
1,599,996	+		IAI47_07570	0.40	-1.3
1,599,996	+		IAI47_07570	0.40	-0.5
1,599,996	+		IAI47_07570	0.40	-1.5
1,599,997	-		IAI47_07570	0.40	-2.1
1,600,056	-		IAI47_07570	0.47	-0.3
1,600,069	-		IAI47_07570	0.48	-0.3
1,600,094	+		IAI47_07570	0.51	-0.7
1,600,095	-		IAI47_07570	0.51	+0.2
1,600,100	+		IAI47_07570	0.52	-2.1
1,600,100	+		IAI47_07570	0.52	-1.1
1,600,100	+		IAI47_07570	0.52	-0.1
1,600,100	+		IAI47_07570	0.52	+0.5
1,600,100	+		IAI47_07570	0.52	+0.6
1,600,101	-		IAI47_07570	0.52	+0.3
1,600,101	-		IAI47_07570	0.52	+1.0
1,600,101	-		IAI47_07570	0.52	+0.3
1,600,101	-		IAI47_07570	0.52	-0.5
1,600,101	-		IAI47_07570	0.52	-1.0
1,600,133	-		IAI47_07570	0.55	-1.1
1,600,198	+		IAI47_07570	0.62	-0.7
1,600,210	-		IAI47_07570	0.64	-2.1
1,600,210	-		IAI47_07570	0.64	-0.9
1,600,210	-		IAI47_07570	0.64	-1.0
1,600,295	+		IAI47_07570	0.73	-0.6
1,600,296	-		IAI47_07570	0.73	+0.7
1,600,339	+		IAI47_07570	0.78	-0.7
1,600,339	+		IAI47_07570	0.78	-0.4
1,600,340	-		IAI47_07570	0.78	-0.0
1,600,340	-		IAI47_07570	0.78	-0.1
1,600,398	-		IAI47_07570	0.84	-1.7
1,600,534	+				+0.1
1,600,535	-				+0.3
1,600,535	-				+0.1
1,600,583	+				-0.0
1,600,598	+				-0.5
1,600,598	+				+1.3
1,600,599	-				-1.0
1,600,599	-				-1.5
1,600,599	-				-0.2
1,600,599	-				+1.0
1,600,610	+				-0.1
1,600,610	+				+1.1
1,600,616	+				-0.1
1,600,617	-				+1.1
1,600,617	-				+0.0
1,600,617	-				+0.9
1,600,617	-				+1.5
1,600,666	-				-0.7
1,600,666	-				-0.5
1,600,666	-				-0.4
1,600,961	-				-1.0
1,600,961	-				+0.4
1,600,964	-				-0.1
1,601,117	+				+0.1
1,601,117	+				+0.5
1,601,117	+				-0.4
1,601,131	+				+1.8
1,601,131	+				-1.7
1,601,145	-				-1.3
1,601,160	-				-1.0
1,601,160	-				-0.3
1,601,166	+				-0.4
1,601,166	+				-1.2
1,601,166	+				+0.1
1,601,166	+				+3.1
1,601,167	-				-0.1
1,601,167	-				-0.0
1,601,178	+				-0.5
1,601,178	+				-1.1
1,601,178	+				+1.0
1,601,179	-				+0.3
1,601,179	-				-2.3
1,601,179	-				-1.7
1,601,179	-				+0.5
1,601,216	+				-0.2
1,601,217	-				+0.5
1,601,244	-				-1.0
1,601,244	-				-0.1
1,601,244	-				+0.5
1,601,495	+				-2.1