Strain Fitness in Pantoea sp. MT58 around IAI47_07105

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
1,497,861	+		IAI47_07095	0.37	-2.7
1,497,861	+		IAI47_07095	0.37	-2.5
1,497,862	-		IAI47_07095	0.37	-4.2
1,497,977	+		IAI47_07095	0.50	-2.3
1,497,977	+		IAI47_07095	0.50	-3.6
1,498,014	+		IAI47_07095	0.54	-1.7
1,498,014	+		IAI47_07095	0.54	-5.3
1,498,015	-		IAI47_07095	0.54	-3.8
1,498,015	-		IAI47_07095	0.54	-2.5
1,498,015	-		IAI47_07095	0.54	-2.9
1,498,035	+		IAI47_07095	0.56	-3.0
1,498,035	+		IAI47_07095	0.56	-3.3
1,498,035	+		IAI47_07095	0.56	-2.9
1,498,036	-		IAI47_07095	0.57	-2.3
1,498,036	-		IAI47_07095	0.57	-3.0
1,498,057	+		IAI47_07095	0.59	-4.0
1,498,057	+		IAI47_07095	0.59	-1.7
1,498,057	+		IAI47_07095	0.59	-2.7
1,498,057	+		IAI47_07095	0.59	-2.9
1,498,058	-		IAI47_07095	0.59	-1.7
1,498,058	-		IAI47_07095	0.59	-4.5
1,498,058	-		IAI47_07095	0.59	-2.0
1,498,058	-		IAI47_07095	0.59	-2.3
1,498,150	-		IAI47_07095	0.69	-2.3
1,498,220	+		IAI47_07095	0.77	-3.2
1,498,221	-		IAI47_07095	0.77	-2.7
1,498,376	+				-2.3
1,498,376	+				-2.7
1,498,377	-				-0.7
1,498,377	-				-3.4
1,498,396	+				-2.7
1,498,396	+				-1.3
1,498,396	+				-3.3
1,498,396	+				-3.0
1,498,396	+				-1.3
1,498,396	+				-1.0
1,498,396	+				+0.3
1,498,396	+				-1.7
1,498,396	+				-2.7
1,498,397	-				-3.4
1,498,397	-				-3.3
1,498,397	-				-2.3
1,498,397	-				-1.3
1,498,400	+				-1.3
1,498,400	+				-2.0
1,498,400	+				+0.3
1,498,400	+				-3.9
1,498,400	+				-2.3
1,498,401	-				+0.3
1,498,401	-				-3.7
1,498,401	-				-2.9
1,498,401	-				-5.0
1,498,401	-				-3.0
1,498,417	+				-2.7
1,498,417	+				-2.5
1,498,418	-				-3.4
1,498,418	-				-3.4
1,498,418	-				-3.7
1,498,418	-				-1.0
1,498,421	+				-2.7
1,498,421	+				-3.2
1,498,421	+				-2.0
1,498,421	+				-1.7
1,498,421	+				-2.3
1,498,421	+				-1.3
1,498,421	+				+0.3
1,498,421	+				-2.5
1,498,422	-				-0.7
1,498,422	-				-2.7
1,498,422	-				-2.5
1,498,462	-				-1.4
1,498,462	-				+0.8
1,498,462	-				-0.2
1,498,569	+				-3.2
1,498,615	+				-4.8
1,498,616	-				+2.0
1,498,616	-				-0.6
1,498,618	+				-4.1
1,498,619	-				-1.3
1,498,619	-				-1.3
1,498,619	-				-0.2
1,498,638	+				-1.7
1,498,638	+				-1.3
1,498,638	+				-0.7
1,498,639	-				+0.9
1,498,639	-				+0.3
1,498,639	-				+1.4
1,498,639	-				-0.1
1,498,655	+				-2.0
1,498,660	+				-3.3
1,498,660	+				-2.5
1,498,660	+				-3.0
1,498,661	-				+1.9
1,498,661	-				-1.7
1,498,664	+				-3.9
1,498,664	+				-0.7
1,498,664	+				-3.3
1,498,664	+				-0.7
1,498,664	+				-3.7
1,498,664	+				-4.2
1,498,664	+				-2.9
1,498,664	+				-4.3
1,498,664	+				-2.5
1,498,664	+				-2.5
1,498,664	+				-3.7
1,498,664	+				-2.0
1,498,664	+				-1.7
1,498,665	-				-1.6
1,498,665	-				-0.4
1,498,665	-				-0.0
1,498,665	-				-0.6
1,498,665	-				-0.6
1,498,665	-				-1.3
1,498,665	-				-0.3
1,498,665	-				-0.1
1,498,665	-				-1.5
1,498,665	-				+1.3
1,498,665	-				-0.5
1,498,665	-				-0.1
1,498,755	-				-0.7
1,498,755	-				-0.5
1,498,829	+				-0.7
1,498,830	-				-1.7
1,498,833	+				-0.8
1,498,833	+				-0.7
1,498,833	+				-0.2
1,498,834	-				+0.3
1,498,834	-				-1.1
1,498,834	-				+0.9
1,498,834	-				+2.3
1,498,834	-				+1.3
1,499,000	+		IAI47_07105	0.25	+2.3
1,499,000	+		IAI47_07105	0.25	+0.2
1,499,000	+		IAI47_07105	0.25	+0.0
1,499,000	+		IAI47_07105	0.25	-0.5
1,499,000	+		IAI47_07105	0.25	-1.7
1,499,001	-		IAI47_07105	0.25	+1.4
1,499,001	-		IAI47_07105	0.25	-0.6
1,499,001	-		IAI47_07105	0.25	+1.6
1,499,001	-		IAI47_07105	0.25	-0.3
1,499,021	+		IAI47_07105	0.27	-0.8
1,499,056	+		IAI47_07105	0.32	-0.3
1,499,057	-		IAI47_07105	0.32	+0.3
1,499,099	-		IAI47_07105	0.37	+0.3
1,499,141	-		IAI47_07105	0.42	+1.4
1,499,260	-		IAI47_07105	0.56	-0.3
1,499,388	+		IAI47_07105	0.72	-0.5
1,499,389	-		IAI47_07105	0.72	-1.0
1,499,421	+		IAI47_07105	0.76	+0.9
1,499,421	+		IAI47_07105	0.76	+0.3
1,499,422	-		IAI47_07105	0.76	-0.5
1,499,425	+		IAI47_07105	0.76	-0.8
1,499,425	+		IAI47_07105	0.76	+0.0
1,499,425	+		IAI47_07105	0.76	-0.5
1,499,426	-		IAI47_07105	0.76	-0.3
1,499,426	-		IAI47_07105	0.76	+1.5
1,499,427	+		IAI47_07105	0.76	+0.9
1,499,468	-		IAI47_07105	0.81	+0.3
1,499,468	-		IAI47_07105	0.81	+0.7
1,499,566	-				-0.1
1,499,585	-				-1.3
1,499,585	-				+1.1
1,499,590	+				-1.0
1,499,623	+				+1.1
1,499,623	+				-0.0
1,499,623	+				+0.7
1,499,623	+				+2.3
1,499,623	+				+1.2
1,499,623	+				+0.3
1,499,623	+				+1.3
1,499,624	-				+0.0
1,499,624	-				-0.0
1,499,624	-				-0.9
1,499,637	+				+1.4
1,499,637	+				+0.7
1,499,637	+				-0.1
1,499,684	+				+0.3
1,499,700	-				-1.3
1,499,751	+				+0.7
1,499,751	+				+0.5
1,499,752	-				+1.3
1,499,752	-				+0.3
1,499,752	-				+0.7
1,499,752	-				+0.9
1,499,789	+				-0.7
1,499,789	+				-0.0
1,499,789	+				+0.0
1,499,790	-				-1.0
1,499,790	-				-0.2
1,499,815	-				-0.8
1,499,815	-				-1.5
1,499,848	+				+1.3
1,499,848	+				+0.7
1,499,848	+				-0.2
1,499,849	-				-0.2
1,499,849	-				+0.1
1,499,936	+		IAI47_07110	0.12	-0.7
1,499,936	+		IAI47_07110	0.12	+1.3
1,499,936	+		IAI47_07110	0.12	-2.9
1,499,936	+		IAI47_07110	0.12	-0.7
1,499,937	-		IAI47_07110	0.12	+0.1
1,499,937	-		IAI47_07110	0.12	-1.7
1,499,994	+		IAI47_07110	0.16	+0.9
1,499,994	+		IAI47_07110	0.16	-1.2
1,499,994	+		IAI47_07110	0.16	-1.3
1,499,995	-		IAI47_07110	0.16	-0.7
1,499,995	-		IAI47_07110	0.16	-1.7
1,500,119	+		IAI47_07110	0.26	-2.0
1,500,120	-		IAI47_07110	0.26	-0.0
1,500,120	-		IAI47_07110	0.26	-2.0
1,500,120	-		IAI47_07110	0.26	-0.2
1,500,120	-		IAI47_07110	0.26	-1.7
1,500,120	-				-0.7
1,500,123	-		IAI47_07110	0.26	-1.5
1,500,123	-		IAI47_07110	0.26	+1.3
1,500,123	-		IAI47_07110	0.26	+0.3
1,500,156	+		IAI47_07110	0.29	-0.2
1,500,156	+		IAI47_07110	0.29	-0.3
1,500,156	+		IAI47_07110	0.29	-0.7
1,500,157	-		IAI47_07110	0.29	+1.0
1,500,157	-		IAI47_07110	0.29	+0.5
1,500,157	-		IAI47_07110	0.29	-0.2
1,500,157	-		IAI47_07110	0.29	-0.1
1,500,157	-		IAI47_07110	0.29	-0.4
1,500,157	-		IAI47_07110	0.29	-0.5
1,500,157	-		IAI47_07110	0.29	+2.9
1,500,175	-		IAI47_07110	0.30	+0.3
1,500,179	+		IAI47_07110	0.31	+0.6
1,500,180	-		IAI47_07110	0.31	+1.4
1,500,188	-		IAI47_07110	0.31	-0.3
1,500,188	-		IAI47_07110	0.31	+2.1
1,500,207	+		IAI47_07110	0.33	-1.6
1,500,208	-		IAI47_07110	0.33	-0.3
1,500,208	-		IAI47_07110	0.33	+0.3
1,500,219	+		IAI47_07110	0.34	-1.3
1,500,219	+		IAI47_07110	0.34	-0.1
1,500,219	+		IAI47_07110	0.34	+0.3
1,500,220	-		IAI47_07110	0.34	-1.3
1,500,223	+		IAI47_07110	0.34	-0.3
1,500,223	+		IAI47_07110	0.34	-0.7
1,500,224	-		IAI47_07110	0.34	-0.6
1,500,240	+		IAI47_07110	0.36	-0.2
1,500,240	+		IAI47_07110	0.36	-0.7
1,500,240	+		IAI47_07110	0.36	-2.3
1,500,240	+		IAI47_07110	0.36	-1.0
1,500,240	+		IAI47_07110	0.36	+0.8
1,500,240	+		IAI47_07110	0.36	+0.3
1,500,240	+		IAI47_07110	0.36	+0.6
1,500,240	+		IAI47_07110	0.36	-0.1
1,500,240	+		IAI47_07110	0.36	-1.3
1,500,241	-		IAI47_07110	0.36	-0.3
1,500,241	-		IAI47_07110	0.36	-0.7
1,500,241	-		IAI47_07110	0.36	-0.1
1,500,241	-		IAI47_07110	0.36	-1.4
1,500,241	-		IAI47_07110	0.36	+0.4
1,500,241	-		IAI47_07110	0.36	-1.0
1,500,241	-		IAI47_07110	0.36	-1.0
1,500,241	-		IAI47_07110	0.36	+1.9
1,500,241	-		IAI47_07110	0.36	-0.6
1,500,241	-		IAI47_07110	0.36	-1.3
1,500,241	-		IAI47_07110	0.36	+0.1
1,500,241	-		IAI47_07110	0.36	-0.3
1,500,241	-		IAI47_07110	0.36	+0.3
1,500,241	-		IAI47_07110	0.36	-0.9
1,500,241	-		IAI47_07110	0.36	-0.3
1,500,357	+		IAI47_07110	0.45	-0.8
1,500,357	+		IAI47_07110	0.45	+1.9
1,500,357	+		IAI47_07110	0.45	-0.4
1,500,358	-		IAI47_07110	0.45	+0.5
1,500,358	-		IAI47_07110	0.45	-0.5
1,500,358	-		IAI47_07110	0.45	+0.3
1,500,358	-		IAI47_07110	0.45	-0.6
1,500,421	+		IAI47_07110	0.50	+0.0
1,500,421	+		IAI47_07110	0.50	+0.9
1,500,422	-		IAI47_07110	0.50	-0.8
1,500,422	-		IAI47_07110	0.50	+0.3
1,500,422	-		IAI47_07110	0.50	-1.0
1,500,462	+		IAI47_07110	0.53	-0.1
1,500,462	+		IAI47_07110	0.53	+0.2
1,500,462	+		IAI47_07110	0.53	-0.3
1,500,462	+		IAI47_07110	0.53	-0.4
1,500,463	-		IAI47_07110	0.53	+1.3
1,500,463	-		IAI47_07110	0.53	+0.7
1,500,463	-		IAI47_07110	0.53	+1.3
1,500,463	-		IAI47_07110	0.53	-1.1
1,500,463	-		IAI47_07110	0.53	-0.2
1,500,463	-		IAI47_07110	0.53	+0.3
1,500,618	+		IAI47_07110	0.65	-0.4
1,500,618	+		IAI47_07110	0.65	+0.3
1,500,618	+		IAI47_07110	0.65	+1.0
1,500,618	+		IAI47_07110	0.65	+0.4
1,500,619	-		IAI47_07110	0.65	+0.3
1,500,619	-		IAI47_07110	0.65	+1.0
1,500,619	-		IAI47_07110	0.65	-0.0
1,500,619	-		IAI47_07110	0.65	-1.3
1,500,619	-		IAI47_07110	0.65	-0.4
1,500,619	-		IAI47_07110	0.65	-2.0