Strain Fitness in Pantoea sp. MT58 around IAI47_07100

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
1,497,700	+		IAI47_07095	0.19	-2.3
1,497,700	+		IAI47_07095	0.19	-2.9
1,497,700	+		IAI47_07095	0.19	-4.4
1,497,701	-		IAI47_07095	0.19	-2.5
1,497,701	-		IAI47_07095	0.19	-0.1
1,497,744	+		IAI47_07095	0.24	-2.5
1,497,744	+		IAI47_07095	0.24	-3.3
1,497,744	+		IAI47_07095	0.24	-1.3
1,497,744	+		IAI47_07095	0.24	-3.0
1,497,744	+		IAI47_07095	0.24	-3.7
1,497,744	+		IAI47_07095	0.24	-2.9
1,497,744	+		IAI47_07095	0.24	-3.0
1,497,744	+		IAI47_07095	0.24	-3.3
1,497,744	+		IAI47_07095	0.24	-3.5
1,497,744	+		IAI47_07095	0.24	-2.3
1,497,744	+		IAI47_07095	0.24	-3.5
1,497,744	-		IAI47_07095	0.24	+0.3
1,497,745	-		IAI47_07095	0.24	-0.5
1,497,763	+		IAI47_07095	0.26	-2.0
1,497,764	-		IAI47_07095	0.26	+1.4
1,497,764	-		IAI47_07095	0.26	-2.3
1,497,794	-		IAI47_07095	0.30	-2.0
1,497,861	+		IAI47_07095	0.37	-2.7
1,497,861	+		IAI47_07095	0.37	-2.5
1,497,862	-		IAI47_07095	0.37	-4.2
1,497,977	+		IAI47_07095	0.50	-2.3
1,497,977	+		IAI47_07095	0.50	-3.6
1,498,014	+		IAI47_07095	0.54	-1.7
1,498,014	+		IAI47_07095	0.54	-5.3
1,498,015	-		IAI47_07095	0.54	-3.8
1,498,015	-		IAI47_07095	0.54	-2.5
1,498,015	-		IAI47_07095	0.54	-2.9
1,498,035	+		IAI47_07095	0.56	-3.0
1,498,035	+		IAI47_07095	0.56	-3.3
1,498,035	+		IAI47_07095	0.56	-2.9
1,498,036	-		IAI47_07095	0.57	-2.3
1,498,036	-		IAI47_07095	0.57	-3.0
1,498,057	+		IAI47_07095	0.59	-4.0
1,498,057	+		IAI47_07095	0.59	-1.7
1,498,057	+		IAI47_07095	0.59	-2.7
1,498,057	+		IAI47_07095	0.59	-2.9
1,498,058	-		IAI47_07095	0.59	-1.7
1,498,058	-		IAI47_07095	0.59	-4.5
1,498,058	-		IAI47_07095	0.59	-2.0
1,498,058	-		IAI47_07095	0.59	-2.3
1,498,150	-		IAI47_07095	0.69	-2.3
1,498,220	+		IAI47_07095	0.77	-3.2
1,498,221	-		IAI47_07095	0.77	-2.7
1,498,376	+				-2.3
1,498,376	+				-2.7
1,498,377	-				-0.7
1,498,377	-				-3.4
1,498,396	+				-2.7
1,498,396	+				-1.3
1,498,396	+				-3.3
1,498,396	+				-3.0
1,498,396	+				-1.3
1,498,396	+				-1.0
1,498,396	+				+0.3
1,498,396	+				-1.7
1,498,396	+				-2.7
1,498,397	-				-3.4
1,498,397	-				-3.3
1,498,397	-				-2.3
1,498,397	-				-1.3
1,498,400	+				-1.3
1,498,400	+				-2.0
1,498,400	+				+0.3
1,498,400	+				-3.9
1,498,400	+				-2.3
1,498,401	-				+0.3
1,498,401	-				-3.7
1,498,401	-				-2.9
1,498,401	-				-5.0
1,498,401	-				-3.0
1,498,417	+				-2.7
1,498,417	+				-2.5
1,498,418	-				-3.4
1,498,418	-				-3.4
1,498,418	-				-3.7
1,498,418	-				-1.0
1,498,421	+				-2.7
1,498,421	+				-3.2
1,498,421	+				-2.0
1,498,421	+				-1.7
1,498,421	+				-2.3
1,498,421	+				-1.3
1,498,421	+				+0.3
1,498,421	+				-2.5
1,498,422	-				-0.7
1,498,422	-				-2.7
1,498,422	-				-2.5
1,498,462	-				-1.4
1,498,462	-				+0.8
1,498,462	-				-0.2
1,498,569	+				-3.2
1,498,615	+				-4.8
1,498,616	-				+2.0
1,498,616	-				-0.6
1,498,618	+				-4.1
1,498,619	-				-1.3
1,498,619	-				-1.3
1,498,619	-				-0.2
1,498,638	+				-1.7
1,498,638	+				-1.3
1,498,638	+				-0.7
1,498,639	-				+0.9
1,498,639	-				+0.3
1,498,639	-				+1.4
1,498,639	-				-0.1
1,498,655	+				-2.0
1,498,660	+				-3.3
1,498,660	+				-2.5
1,498,660	+				-3.0
1,498,661	-				+1.9
1,498,661	-				-1.7
1,498,664	+				-3.9
1,498,664	+				-0.7
1,498,664	+				-3.3
1,498,664	+				-0.7
1,498,664	+				-3.7
1,498,664	+				-4.2
1,498,664	+				-2.9
1,498,664	+				-4.3
1,498,664	+				-2.5
1,498,664	+				-2.5
1,498,664	+				-3.7
1,498,664	+				-2.0
1,498,664	+				-1.7
1,498,665	-				-1.6
1,498,665	-				-0.4
1,498,665	-				-0.0
1,498,665	-				-0.6
1,498,665	-				-0.6
1,498,665	-				-1.3
1,498,665	-				-0.3
1,498,665	-				-0.1
1,498,665	-				-1.5
1,498,665	-				+1.3
1,498,665	-				-0.5
1,498,665	-				-0.1
1,498,755	-				-0.7
1,498,755	-				-0.5
1,498,829	+				-0.7
1,498,830	-				-1.7
1,498,833	+				-0.8
1,498,833	+				-0.7
1,498,833	+				-0.2
1,498,834	-				+0.3
1,498,834	-				-1.1
1,498,834	-				+0.9
1,498,834	-				+2.3
1,498,834	-				+1.3
1,499,000	+		IAI47_07105	0.25	+2.3
1,499,000	+		IAI47_07105	0.25	+0.2
1,499,000	+		IAI47_07105	0.25	+0.0
1,499,000	+		IAI47_07105	0.25	-0.5
1,499,000	+		IAI47_07105	0.25	-1.7
1,499,001	-		IAI47_07105	0.25	+1.4
1,499,001	-		IAI47_07105	0.25	-0.6
1,499,001	-		IAI47_07105	0.25	+1.6
1,499,001	-		IAI47_07105	0.25	-0.3
1,499,021	+		IAI47_07105	0.27	-0.8
1,499,056	+		IAI47_07105	0.32	-0.3
1,499,057	-		IAI47_07105	0.32	+0.3
1,499,099	-		IAI47_07105	0.37	+0.3
1,499,141	-		IAI47_07105	0.42	+1.4
1,499,260	-		IAI47_07105	0.56	-0.3
1,499,388	+		IAI47_07105	0.72	-0.5
1,499,389	-		IAI47_07105	0.72	-1.0
1,499,421	+		IAI47_07105	0.76	+0.9
1,499,421	+		IAI47_07105	0.76	+0.3
1,499,422	-		IAI47_07105	0.76	-0.5
1,499,425	+		IAI47_07105	0.76	-0.8
1,499,425	+		IAI47_07105	0.76	+0.0
1,499,425	+		IAI47_07105	0.76	-0.5
1,499,426	-		IAI47_07105	0.76	-0.3
1,499,426	-		IAI47_07105	0.76	+1.5
1,499,427	+		IAI47_07105	0.76	+0.9
1,499,468	-		IAI47_07105	0.81	+0.3
1,499,468	-		IAI47_07105	0.81	+0.7
1,499,566	-				-0.1
1,499,585	-				-1.3
1,499,585	-				+1.1
1,499,590	+				-1.0