Strain Fitness in Pantoea sp. MT58 around IAI47_07080

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
1,493,109	+		IAI47_07070	0.48	-2.3
1,493,109	+		IAI47_07070	0.48	-2.3
1,493,109	+		IAI47_07070	0.48	-2.3
1,493,109	+		IAI47_07070	0.48	-1.3
1,493,109	+		IAI47_07070	0.48	+0.3
1,493,109	+		IAI47_07070	0.48	-3.0
1,493,110	-		IAI47_07070	0.48	-3.2
1,493,110	-		IAI47_07070	0.48	-2.3
1,493,158	-		IAI47_07070	0.55	-3.2
1,493,158	-		IAI47_07070	0.55	-1.7
1,493,340	+		IAI47_07070	0.79	-2.9
1,493,341	-		IAI47_07070	0.79	-3.8
1,493,358	+		IAI47_07070	0.82	-1.7
1,493,358	+		IAI47_07070	0.82	-2.9
1,493,359	-		IAI47_07070	0.82	-1.7
1,493,359	-		IAI47_07070	0.82	-3.4
1,493,359	-		IAI47_07070	0.82	-3.2
1,493,359	-		IAI47_07070	0.82	-3.2
1,493,359	-		IAI47_07070	0.82	-1.3
1,493,376	+		IAI47_07070	0.84	-2.0
1,493,376	+		IAI47_07070	0.84	-1.3
1,493,377	-		IAI47_07070	0.84	-3.5
1,493,380	+		IAI47_07070	0.85	-2.7
1,493,381	-		IAI47_07070	0.85	-3.7
1,493,431	+				-3.2
1,493,469	+				-2.5
1,493,469	+				-2.7
1,493,470	-				-3.5
1,493,486	+				-2.9
1,493,493	+				-2.3
1,493,493	+				-2.3
1,493,493	+				-1.7
1,493,493	+				-3.4
1,493,493	+				-2.0
1,493,493	+				-1.3
1,493,493	+				-4.7
1,493,493	+				-2.9
1,493,493	+				-3.2
1,493,493	+				-2.3
1,493,494	-				-2.5
1,493,494	-				-1.3
1,493,494	-				-2.5
1,493,494	-				-1.3
1,493,494	-				-3.2
1,493,494	-				-2.7
1,493,494	-				-0.7
1,493,494	-				-2.9
1,493,494	-				-1.3
1,493,494	-				-1.7
1,493,494	-				-3.0
1,493,494	-				-2.9
1,493,494	-				-2.9
1,493,494	-				-1.7
1,493,494	-				-2.7
1,493,494	-				-1.7
1,493,573	-		IAI47_07075	0.14	-2.5
1,493,573	-		IAI47_07075	0.14	-3.9
1,493,573	-		IAI47_07075	0.14	-0.7
1,493,607	+		IAI47_07075	0.19	-2.5
1,493,607	+		IAI47_07075	0.19	-3.5
1,493,607	+		IAI47_07075	0.19	-3.2
1,493,608	-		IAI47_07075	0.20	-2.2
1,493,649	+		IAI47_07075	0.27	-3.3
1,493,649	+		IAI47_07075	0.27	-0.7
1,493,649	+		IAI47_07075	0.27	-2.3
1,493,649	+		IAI47_07075	0.27	-3.7
1,493,649	+		IAI47_07075	0.27	-4.0
1,493,649	+		IAI47_07075	0.27	-2.7
1,493,649	+		IAI47_07075	0.27	-3.3
1,493,649	+		IAI47_07075	0.27	-1.7
1,493,649	+		IAI47_07075	0.27	-2.3
1,493,650	-		IAI47_07075	0.27	-2.2
1,493,650	-		IAI47_07075	0.27	-0.3
1,493,650	-		IAI47_07075	0.27	-1.3
1,493,650	-		IAI47_07075	0.27	-3.0
1,493,650	-		IAI47_07075	0.27	-0.7
1,493,650	-		IAI47_07075	0.27	-2.9
1,493,650	-		IAI47_07075	0.27	-1.7
1,493,664	+		IAI47_07075	0.29	+0.3
1,493,664	+		IAI47_07075	0.29	-1.7
1,493,665	-		IAI47_07075	0.29	-2.5
1,493,665	-		IAI47_07075	0.29	-2.3
1,493,670	+		IAI47_07075	0.30	-0.7
1,493,671	-		IAI47_07075	0.30	+0.3
1,493,671	-		IAI47_07075	0.30	-0.7
1,493,788	+		IAI47_07075	0.50	-3.2
1,493,837	+		IAI47_07075	0.58	-2.0
1,493,838	-		IAI47_07075	0.59	-2.5
1,493,838	-		IAI47_07075	0.59	-1.3
1,493,838	-		IAI47_07075	0.59	-1.3
1,493,838	-		IAI47_07075	0.59	-2.3
1,493,845	+		IAI47_07075	0.60	+0.3
1,493,943	-		IAI47_07075	0.76	-2.7
1,493,943	-		IAI47_07075	0.76	-2.5
1,494,007	+		IAI47_07075	0.87	-4.7
1,494,007	+		IAI47_07075	0.87	-3.9
1,494,008	-		IAI47_07075	0.87	-2.0
1,494,009	+		IAI47_07075	0.87	-1.7
1,494,009	+		IAI47_07075	0.87	-2.9
1,494,010	-		IAI47_07075	0.88	-1.3
1,494,010	-		IAI47_07075	0.88	-1.3
1,494,111	+				-2.9
1,494,111	+				-0.7
1,494,112	-				-3.7
1,494,114	+				-2.9
1,494,114	+				-3.5
1,494,115	-				-2.7
1,494,115	-				-3.5
1,494,159	+				-1.7
1,494,230	+		IAI47_07080	0.14	-2.3
1,494,231	-		IAI47_07080	0.14	-2.0
1,494,290	+		IAI47_07080	0.19	-0.7
1,494,290	+		IAI47_07080	0.19	-2.5
1,494,290	+		IAI47_07080	0.19	-2.0
1,494,290	+		IAI47_07080	0.19	-4.5
1,494,291	-		IAI47_07080	0.20	-3.4
1,494,334	-		IAI47_07080	0.24	-4.6
1,494,334	-		IAI47_07080	0.24	-2.3
1,494,334	-		IAI47_07080	0.24	-1.7
1,494,447	+		IAI47_07080	0.34	-1.7
1,494,474	+		IAI47_07080	0.37	-5.6
1,494,474	+		IAI47_07080	0.37	-1.3
1,494,474	+		IAI47_07080	0.37	-2.7
1,494,474	+		IAI47_07080	0.37	-3.0
1,494,475	-		IAI47_07080	0.37	-2.3
1,494,476	+		IAI47_07080	0.37	-3.3
1,494,476	+		IAI47_07080	0.37	-2.5
1,494,476	+		IAI47_07080	0.37	-2.0
1,494,476	+		IAI47_07080	0.37	-3.7
1,494,477	-		IAI47_07080	0.37	-2.3
1,494,477	-		IAI47_07080	0.37	-5.4
1,494,477	-		IAI47_07080	0.37	-3.4
1,494,477	-		IAI47_07080	0.37	-2.9
1,494,477	-		IAI47_07080	0.37	-4.2
1,494,568	-		IAI47_07080	0.46	-1.3
1,494,630	+		IAI47_07080	0.51	-2.0
1,494,630	+		IAI47_07080	0.51	-1.3
1,494,630	+		IAI47_07080	0.51	-1.7
1,494,630	+		IAI47_07080	0.51	+0.3
1,494,631	-		IAI47_07080	0.51	-0.7
1,494,631	-		IAI47_07080	0.51	-2.0
1,494,631	-		IAI47_07080	0.51	-2.3
1,494,631	-		IAI47_07080	0.51	-2.9
1,494,631	-		IAI47_07080	0.51	-2.3
1,494,773	+		IAI47_07080	0.65	-3.0
1,494,773	+		IAI47_07080	0.65	-3.5
1,494,773	+		IAI47_07080	0.65	+0.3
1,494,773	+		IAI47_07080	0.65	-2.7
1,494,774	-		IAI47_07080	0.65	-4.2
1,494,774	-		IAI47_07080	0.65	-1.8
1,494,774	-		IAI47_07080	0.65	-3.4
1,494,774	-		IAI47_07080	0.65	-2.0
1,494,774	-		IAI47_07080	0.65	-2.7
1,494,774	-		IAI47_07080	0.65	-0.7
1,494,774	-		IAI47_07080	0.65	-4.1
1,494,774	-		IAI47_07080	0.65	-2.3
1,494,786	+		IAI47_07080	0.66	-2.5
1,494,787	-		IAI47_07080	0.66	+0.3
1,494,990	+		IAI47_07080	0.85	-1.7
1,494,990	+		IAI47_07080	0.85	-1.3
1,494,991	-		IAI47_07080	0.85	-3.2
1,495,113	+				-2.3
1,495,113	+				-3.2
1,495,113	+				-2.3
1,495,114	-				-1.3
1,495,114	-				-2.7
1,495,114	-				-1.7
1,495,114	-				-2.0
1,495,114	-				-1.7
1,495,128	+				-3.3
1,495,129	-				-1.7
1,495,330	+		IAI47_07085	0.17	-4.3
1,495,330	+		IAI47_07085	0.17	-2.3
1,495,330	+		IAI47_07085	0.17	-3.0
1,495,330	+		IAI47_07085	0.17	-1.3
1,495,330	+		IAI47_07085	0.17	-3.7
1,495,330	+		IAI47_07085	0.17	-2.0
1,495,330	+		IAI47_07085	0.17	-2.3
1,495,330	+		IAI47_07085	0.17	-2.7
1,495,330	+		IAI47_07085	0.17	-2.5
1,495,330	+		IAI47_07085	0.17	-2.3
1,495,330	+		IAI47_07085	0.17	-3.3
1,495,330	+		IAI47_07085	0.17	-2.7
1,495,331	-		IAI47_07085	0.17	-1.7
1,495,331	-		IAI47_07085	0.17	-4.1
1,495,331	-		IAI47_07085	0.17	-3.5
1,495,331	-		IAI47_07085	0.17	-1.3
1,495,331	-		IAI47_07085	0.17	-3.3
1,495,331	-		IAI47_07085	0.17	-5.4
1,495,331	-		IAI47_07085	0.17	-2.7
1,495,331	-		IAI47_07085	0.17	-3.4
1,495,331	-		IAI47_07085	0.17	+0.3
1,495,331	-		IAI47_07085	0.17	-2.7
1,495,331	-		IAI47_07085	0.17	-2.0
1,495,331	-		IAI47_07085	0.17	-3.3
1,495,331	-		IAI47_07085	0.17	-1.7
1,495,331	-		IAI47_07085	0.17	-3.9
1,495,331	-		IAI47_07085	0.17	-2.7
1,495,331	-		IAI47_07085	0.17	-3.0
1,495,331	-		IAI47_07085	0.17	-1.3
1,495,331	-		IAI47_07085	0.17	-2.7
1,495,334	+		IAI47_07085	0.17	-2.9
1,495,334	+		IAI47_07085	0.17	-4.1
1,495,334	+		IAI47_07085	0.17	-2.3
1,495,335	-		IAI47_07085	0.18	-3.3
1,495,335	-		IAI47_07085	0.18	-2.7
1,495,335	-		IAI47_07085	0.18	-3.4
1,495,442	+		IAI47_07085	0.27	-0.7
1,495,442	+		IAI47_07085	0.27	-2.5
1,495,443	-		IAI47_07085	0.28	-0.7
1,495,443	-		IAI47_07085	0.28	-4.3
1,495,538	+		IAI47_07085	0.36	-1.7
1,495,539	-		IAI47_07085	0.36	-3.2
1,495,539	-		IAI47_07085	0.36	-3.6
1,495,539	-		IAI47_07085	0.36	-2.5
1,495,595	+		IAI47_07085	0.42	-1.3
1,495,595	+		IAI47_07085	0.42	-3.5
1,495,596	-		IAI47_07085	0.42	-2.9
1,495,596	-		IAI47_07085	0.42	-2.7
1,495,596	-		IAI47_07085	0.42	-2.5
1,495,596	-		IAI47_07085	0.42	-2.0
1,495,596	-		IAI47_07085	0.42	-1.3
1,495,666	+		IAI47_07085	0.48	-2.5
1,495,666	+		IAI47_07085	0.48	-2.7
1,495,666	+		IAI47_07085	0.48	-4.0
1,495,666	+		IAI47_07085	0.48	-3.9
1,495,666	+		IAI47_07085	0.48	-2.7
1,495,666	+		IAI47_07085	0.48	-1.3
1,495,667	-		IAI47_07085	0.48	-3.7
1,495,667	-		IAI47_07085	0.48	-2.0
1,495,667	-		IAI47_07085	0.48	-3.7
1,495,667	-		IAI47_07085	0.48	-2.0
1,495,667	-		IAI47_07085	0.48	-2.0
1,495,683	+		IAI47_07085	0.50	-4.2
1,495,684	-		IAI47_07085	0.50	-2.5
1,495,737	-		IAI47_07085	0.55	-3.3
1,495,774	+		IAI47_07085	0.58	-3.7
1,495,774	+		IAI47_07085	0.58	-2.3
1,495,850	+		IAI47_07085	0.65	-4.0
1,495,850	+		IAI47_07085	0.65	-2.0
1,495,855	+		IAI47_07085	0.66	-1.7
1,495,855	+		IAI47_07085	0.66	-3.5
1,495,855	+		IAI47_07085	0.66	-1.3
1,495,855	+		IAI47_07085	0.66	-3.9
1,495,856	-		IAI47_07085	0.66	-2.9
1,495,888	+		IAI47_07085	0.69	-0.7
1,495,888	+		IAI47_07085	0.69	-3.4
1,495,888	+		IAI47_07085	0.69	-2.0
1,495,888	+		IAI47_07085	0.69	-3.5
1,495,888	+		IAI47_07085	0.69	-2.9
1,495,888	+		IAI47_07085	0.69	-4.7
1,495,888	+		IAI47_07085	0.69	-2.7
1,495,889	-		IAI47_07085	0.69	-0.7
1,495,889	-		IAI47_07085	0.69	-1.3
1,495,889	-		IAI47_07085	0.69	-4.9
1,495,889	-		IAI47_07085	0.69	-3.3
1,495,897	+		IAI47_07085	0.70	-2.3
1,495,897	+		IAI47_07085	0.70	-5.0
1,495,898	-		IAI47_07085	0.70	-2.5
1,495,898	-		IAI47_07085	0.70	-3.6
1,496,017	+		IAI47_07085	0.81	-2.5
1,496,063	-		IAI47_07085	0.85	-2.9
1,496,123	+				-3.4
1,496,123	+				-3.6