Strain Fitness in Pantoea sp. MT58 around IAI47_07020

Experiment: Ying_Others16 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_07015 and IAI47_07020 are separated by 4 nucleotidesIAI47_07020 and IAI47_07025 are separated by 64 nucleotides IAI47_07015: IAI47_07015 - ABC transporter ATP-binding protein, at 1,479,118 to 1,480,521 _07015 IAI47_07020: IAI47_07020 - hypothetical protein, at 1,480,526 to 1,482,430 _07020 IAI47_07025: IAI47_07025 - glycosyltransferase family 4 protein, at 1,482,495 to 1,483,685 _07025 Position (kb) 1480 1481 1482 1483Strain fitness (log2 ratio) -2 -1 0 1 2at 1479.582 kb on + strand, within IAI47_07015at 1479.650 kb on + strand, within IAI47_07015at 1479.650 kb on + strand, within IAI47_07015at 1479.729 kb on + strand, within IAI47_07015at 1479.732 kb on + strand, within IAI47_07015at 1479.732 kb on + strand, within IAI47_07015at 1479.733 kb on - strand, within IAI47_07015at 1479.787 kb on - strand, within IAI47_07015at 1479.806 kb on + strand, within IAI47_07015at 1480.019 kb on + strand, within IAI47_07015at 1480.379 kb on + strand, within IAI47_07015at 1480.419 kb on - strandat 1480.776 kb on - strand, within IAI47_07020at 1480.880 kb on - strand, within IAI47_07020at 1481.481 kb on - strand, within IAI47_07020at 1482.176 kb on - strand, within IAI47_07020at 1482.397 kb on + strandat 1482.517 kb on + strandat 1482.574 kb on - strandat 1482.593 kb on + strandat 1482.604 kb on + strandat 1482.605 kb on - strandat 1482.607 kb on - strandat 1482.627 kb on - strand, within IAI47_07025at 1482.674 kb on + strand, within IAI47_07025at 1482.786 kb on + strand, within IAI47_07025at 1482.787 kb on - strand, within IAI47_07025at 1482.877 kb on + strand, within IAI47_07025at 1482.903 kb on - strand, within IAI47_07025at 1482.903 kb on - strand, within IAI47_07025at 1482.966 kb on + strand, within IAI47_07025at 1483.003 kb on + strand, within IAI47_07025at 1483.004 kb on - strand, within IAI47_07025at 1483.025 kb on + strand, within IAI47_07025at 1483.079 kb on + strand, within IAI47_07025at 1483.205 kb on - strand, within IAI47_07025at 1483.217 kb on + strand, within IAI47_07025at 1483.327 kb on + strand, within IAI47_07025at 1483.328 kb on - strand, within IAI47_07025at 1483.334 kb on + strand, within IAI47_07025at 1483.368 kb on - strand, within IAI47_07025at 1483.397 kb on + strand, within IAI47_07025at 1483.398 kb on - strand, within IAI47_07025at 1483.398 kb on - strand, within IAI47_07025at 1483.420 kb on + strand, within IAI47_07025

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
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1,479,582 + IAI47_07015 0.33 +0.3
1,479,650 + IAI47_07015 0.38 -1.3
1,479,650 + IAI47_07015 0.38 +0.5
1,479,729 + IAI47_07015 0.44 +1.3
1,479,732 + IAI47_07015 0.44 +0.6
1,479,732 + IAI47_07015 0.44 -0.1
1,479,733 - IAI47_07015 0.44 +1.0
1,479,787 - IAI47_07015 0.48 -2.0
1,479,806 + IAI47_07015 0.49 +0.8
1,480,019 + IAI47_07015 0.64 -0.3
1,480,379 + IAI47_07015 0.90 +0.4
1,480,419 - -0.4
1,480,776 - IAI47_07020 0.13 -1.7
1,480,880 - IAI47_07020 0.19 -0.7
1,481,481 - IAI47_07020 0.50 -0.7
1,482,176 - IAI47_07020 0.87 -1.7
1,482,397 + -0.5
1,482,517 + -0.1
1,482,574 - +0.8
1,482,593 + +0.4
1,482,604 + -0.8
1,482,605 - +1.3
1,482,607 - +0.0
1,482,627 - IAI47_07025 0.11 +0.6
1,482,674 + IAI47_07025 0.15 +2.0
1,482,786 + IAI47_07025 0.24 +0.3
1,482,787 - IAI47_07025 0.25 +0.9
1,482,877 + IAI47_07025 0.32 +0.1
1,482,903 - IAI47_07025 0.34 -1.3
1,482,903 - IAI47_07025 0.34 +0.6
1,482,966 + IAI47_07025 0.40 +1.0
1,483,003 + IAI47_07025 0.43 -0.5
1,483,004 - IAI47_07025 0.43 -0.4
1,483,025 + IAI47_07025 0.45 +0.3
1,483,079 + IAI47_07025 0.49 -1.0
1,483,205 - IAI47_07025 0.60 -0.9
1,483,217 + IAI47_07025 0.61 +2.1
1,483,327 + IAI47_07025 0.70 -0.2
1,483,328 - IAI47_07025 0.70 +0.3
1,483,334 + IAI47_07025 0.70 -0.7
1,483,368 - IAI47_07025 0.73 +2.2
1,483,397 + IAI47_07025 0.76 -0.4
1,483,398 - IAI47_07025 0.76 -1.7
1,483,398 - IAI47_07025 0.76 -1.4
1,483,420 + IAI47_07025 0.78 -0.5

Or see this region's nucleotide sequence