Strain Fitness in Pantoea sp. MT58 around IAI47_06710

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
1,396,962	+		IAI47_06705	0.18	+0.5
1,396,984	-		IAI47_06705	0.20	+0.3
1,397,017	-		IAI47_06705	0.23	-0.1
1,397,068	+		IAI47_06705	0.27	+0.3
1,397,068	+		IAI47_06705	0.27	-1.3
1,397,068	+		IAI47_06705	0.27	+0.3
1,397,068	+		IAI47_06705	0.27	-0.1
1,397,068	+		IAI47_06705	0.27	-0.2
1,397,068	+		IAI47_06705	0.27	-0.8
1,397,068	+		IAI47_06705	0.27	-0.3
1,397,069	-		IAI47_06705	0.28	-0.9
1,397,069	-		IAI47_06705	0.28	-0.1
1,397,069	-		IAI47_06705	0.28	-1.1
1,397,069	-		IAI47_06705	0.28	-0.1
1,397,079	+		IAI47_06705	0.28	+0.0
1,397,080	-		IAI47_06705	0.29	+0.7
1,397,085	+		IAI47_06705	0.29	+0.2
1,397,086	-		IAI47_06705	0.29	+2.5
1,397,086	-		IAI47_06705	0.29	-0.5
1,397,086	-		IAI47_06705	0.29	-0.8
1,397,086	-		IAI47_06705	0.29	-0.8
1,397,153	+		IAI47_06705	0.35	-0.1
1,397,154	-		IAI47_06705	0.35	+0.0
1,397,190	+		IAI47_06705	0.38	-0.5
1,397,190	+		IAI47_06705	0.38	+1.6
1,397,235	+		IAI47_06705	0.42	-1.8
1,397,235	+		IAI47_06705	0.42	+1.1
1,397,236	-		IAI47_06705	0.42	-1.3
1,397,444	+		IAI47_06705	0.61	+1.9
1,397,444	+		IAI47_06705	0.61	+0.8
1,397,445	-		IAI47_06705	0.61	-1.2
1,397,445	-		IAI47_06705	0.61	+0.8
1,397,445	-		IAI47_06705	0.61	-2.8
1,397,471	+		IAI47_06705	0.63	-0.6
1,397,471	+		IAI47_06705	0.63	+0.1
1,397,472	-		IAI47_06705	0.63	+2.3
1,397,472	-		IAI47_06705	0.63	+0.1
1,397,472	-		IAI47_06705	0.63	-1.3
1,397,472	-		IAI47_06705	0.63	-0.3
1,397,472	-		IAI47_06705	0.63	+0.3
1,397,565	+		IAI47_06705	0.72	-0.1
1,397,566	-		IAI47_06705	0.72	+0.6
1,397,584	+		IAI47_06705	0.73	+2.0
1,397,585	+		IAI47_06705	0.73	+0.2
1,397,585	+		IAI47_06705	0.73	-0.8
1,397,585	+		IAI47_06705	0.73	-0.7
1,397,585	+		IAI47_06705	0.73	+0.0
1,397,586	-		IAI47_06705	0.74	-0.4
1,397,586	-		IAI47_06705	0.74	-0.4
1,397,586	-		IAI47_06705	0.74	+0.1
1,397,589	+		IAI47_06705	0.74	+0.9
1,397,589	+		IAI47_06705	0.74	-0.3
1,397,589	+		IAI47_06705	0.74	-0.3
1,397,589	+		IAI47_06705	0.74	-1.5
1,397,589	+		IAI47_06705	0.74	+0.9
1,397,590	-		IAI47_06705	0.74	+0.5
1,397,590	-		IAI47_06705	0.74	+1.7
1,397,590	-		IAI47_06705	0.74	-1.6
1,397,590	-		IAI47_06705	0.74	+0.7
1,397,590	-		IAI47_06705	0.74	-1.2
1,397,590	-		IAI47_06705	0.74	-0.8
1,397,590	-		IAI47_06705	0.74	+0.5
1,397,590	-		IAI47_06705	0.74	-0.2
1,397,590	-		IAI47_06705	0.74	-2.5
1,397,590	-		IAI47_06705	0.74	-0.4
1,397,612	+		IAI47_06705	0.76	+0.5
1,397,613	-		IAI47_06705	0.76	-0.1
1,397,613	-		IAI47_06705	0.76	-0.2
1,397,613	-		IAI47_06705	0.76	+0.0
1,397,651	-		IAI47_06705	0.79	-0.6
1,397,741	+		IAI47_06705	0.87	+0.3
1,397,742	-		IAI47_06705	0.87	-0.5
1,397,742	-		IAI47_06705	0.87	+0.7
1,397,752	-		IAI47_06705	0.88	+1.5
1,397,775	+				+1.3
1,397,775	+				+0.5
1,397,776	-				+0.9
1,397,776	-				+0.5
1,397,776	-				+2.3
1,397,776	-				+1.2
1,397,776	-				+2.2
1,397,809	+				+0.3
1,397,809	+				+0.7
1,397,810	-				-0.1
1,397,915	+				-0.1
1,397,915	+				-1.0
1,397,915	+				+1.3
1,397,916	-				+1.0
1,397,916	-				+0.7
1,397,918	+				-1.7
1,397,918	+				-1.7
1,397,919	-				+0.0
1,397,919	-				+1.3
1,397,938	+				-1.3
1,397,938	+				+1.0
1,397,938	+				+1.5
1,397,938	+				+1.3
1,397,938	+				+0.3
1,397,939	-				-0.3
1,397,939	-				+0.5
1,397,958	+				-0.4
1,398,023	-				+1.9
1,398,023	-				+1.0
1,398,056	-		IAI47_06710	0.11	-1.0
1,398,116	-		IAI47_06710	0.17	-1.7
1,398,194	+		IAI47_06710	0.26	-0.7
1,398,216	+		IAI47_06710	0.28	-2.0
1,398,217	-		IAI47_06710	0.29	+1.9
1,398,319	+		IAI47_06710	0.40	-1.3
1,398,478	+		IAI47_06710	0.57	-2.0
1,398,478	+		IAI47_06710	0.57	-0.3
1,398,479	-		IAI47_06710	0.57	-0.7
1,398,520	+		IAI47_06710	0.62	-0.3
1,398,537	+		IAI47_06710	0.64	+1.1
1,398,538	-		IAI47_06710	0.64	+0.9
1,398,647	+		IAI47_06710	0.76	+0.0
1,398,669	+		IAI47_06710	0.78	-0.3
1,398,682	+		IAI47_06710	0.79	-0.7
1,398,683	-		IAI47_06710	0.80	+0.0
1,398,724	+		IAI47_06710	0.84	-2.0
1,398,725	-		IAI47_06710	0.84	-0.9
1,398,740	+		IAI47_06710	0.86	-0.4
1,398,741	-		IAI47_06710	0.86	+0.8
1,398,741	-		IAI47_06710	0.86	-1.2
1,398,778	+				+0.1
1,398,779	-				-0.1
1,398,779	-				-1.5
1,398,847	+				-1.8
1,398,847	+				+0.1
1,398,847	+				+0.1
1,398,847	+				-0.5
1,398,847	+				-1.3
1,398,847	+				-1.3
1,398,847	+				+0.0
1,398,847	+				-0.7
1,398,848	-				+0.6
1,398,848	-				+0.6
1,398,848	-				-0.8
1,398,848	-				+0.7
1,398,848	-				+0.7
1,398,848	-				-0.1
1,398,848	-				-1.7
1,398,848	-				+0.3
1,398,848	-				+0.1
1,398,848	-				+0.2
1,398,848	-				+0.1
1,398,848	-				+0.2
1,398,848	-				+1.6
1,398,848	-				+0.1
1,398,861	-				-2.5
1,398,861	-				+0.0
1,398,937	+				-0.4
1,398,937	+				+0.6
1,398,937	+				-0.5
1,398,937	+				+0.8
1,398,937	+				+0.9
1,398,937	+				+0.3
1,398,938	-				+0.3
1,398,938	-				+0.0
1,398,938	-				-0.4
1,398,940	+				-0.4
1,398,940	+				-1.3
1,398,940	+				+0.7
1,398,940	+				+0.0
1,398,940	+				+0.1
1,398,941	-				+0.4
1,398,941	-				+0.5
1,398,941	-				+0.1
1,398,941	-				+0.1
1,398,941	-				+1.1
1,398,941	-				+0.3
1,398,941	-				-0.2
1,398,941	-				-1.9
1,399,023	+				+0.0
1,399,023	+				-0.1
1,399,041	+				+1.2
1,399,102	+		IAI47_06715	0.10	-0.3
1,399,133	+		IAI47_06715	0.13	+0.9
1,399,133	+		IAI47_06715	0.13	+1.0
1,399,133	+		IAI47_06715	0.13	-0.9
1,399,133	+		IAI47_06715	0.13	-0.3
1,399,134	-		IAI47_06715	0.13	-2.3
1,399,134	-		IAI47_06715	0.13	+0.9
1,399,134	-		IAI47_06715	0.13	+0.5
1,399,137	+		IAI47_06715	0.13	+0.2
1,399,137	+		IAI47_06715	0.13	+0.1
1,399,137	+		IAI47_06715	0.13	+0.6
1,399,138	-		IAI47_06715	0.13	+1.9
1,399,138	-		IAI47_06715	0.13	-0.8
1,399,138	-		IAI47_06715	0.13	+0.5
1,399,138	-		IAI47_06715	0.13	+0.3
1,399,143	-		IAI47_06715	0.14	-0.1
1,399,143	-		IAI47_06715	0.14	+0.1
1,399,209	+		IAI47_06715	0.20	+1.3
1,399,209	+		IAI47_06715	0.20	-1.5
1,399,209	+		IAI47_06715	0.20	-0.8
1,399,210	-		IAI47_06715	0.20	+0.7
1,399,210	-		IAI47_06715	0.20	-0.7
1,399,210	-		IAI47_06715	0.20	-0.2
1,399,221	+		IAI47_06715	0.21	+0.5
1,399,274	-		IAI47_06715	0.26	-0.7
1,399,419	+		IAI47_06715	0.38	-0.3
1,399,419	+		IAI47_06715	0.38	-0.3
1,399,516	+		IAI47_06715	0.47	-0.5
1,399,522	-		IAI47_06715	0.48	-0.6
1,399,588	+		IAI47_06715	0.53	-1.3
1,399,608	-		IAI47_06715	0.55	+1.9
1,399,608	-		IAI47_06715	0.55	+1.2
1,399,608	-		IAI47_06715	0.55	+1.9
1,399,628	+		IAI47_06715	0.57	+0.2
1,399,710	+		IAI47_06715	0.64	-0.5
1,399,711	-		IAI47_06715	0.64	+0.8
1,399,711	-		IAI47_06715	0.64	+0.3
1,399,747	+		IAI47_06715	0.67	+0.4
1,399,847	-		IAI47_06715	0.76	-0.4