Strain Fitness in Pantoea sp. MT58 around IAI47_06455

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
1,314,039	-		IAI47_06450	0.23	+3.0
1,314,039	-		IAI47_06450	0.23	+1.1
1,314,163	-		IAI47_06450	0.34	+0.3
1,314,163	-		IAI47_06450	0.34	+0.7
1,314,279	-		IAI47_06450	0.44	+1.1
1,314,322	-		IAI47_06450	0.48	-0.7
1,314,323	+		IAI47_06450	0.48	+0.3
1,314,323	+		IAI47_06450	0.48	+1.1
1,314,323	+		IAI47_06450	0.48	+1.1
1,314,324	-		IAI47_06450	0.48	+2.1
1,314,324	-		IAI47_06450	0.48	+0.3
1,314,324	-		IAI47_06450	0.48	+0.9
1,314,379	-		IAI47_06450	0.53	-0.4
1,314,379	-		IAI47_06450	0.53	+0.1
1,314,448	-		IAI47_06450	0.59	-0.1
1,314,448	-		IAI47_06450	0.59	+1.2
1,314,500	-		IAI47_06450	0.64	+0.3
1,314,539	+		IAI47_06450	0.67	+1.3
1,314,540	-		IAI47_06450	0.68	+1.3
1,314,540	-		IAI47_06450	0.68	+1.3
1,314,685	-		IAI47_06450	0.80	+1.1
1,314,691	-		IAI47_06450	0.81	-0.3
1,314,806	+				+0.0
1,314,899	+				+1.9
1,314,923	+				+0.7
1,314,988	-				+0.3
1,315,021	-				-1.3
1,315,021	-				+0.1
1,315,073	+				-2.5
1,315,290	-		IAI47_06455	0.14	+1.9
1,315,429	-		IAI47_06455	0.20	+0.7
1,315,429	-		IAI47_06455	0.20	+1.9
1,315,429	-		IAI47_06455	0.20	-0.7
1,315,518	-		IAI47_06455	0.24	+2.3
1,315,548	-		IAI47_06455	0.25	+0.3
1,315,617	-		IAI47_06455	0.28	+2.3
1,315,698	-		IAI47_06455	0.31	+0.3
1,315,701	-		IAI47_06455	0.32	-0.3
1,315,707	-		IAI47_06455	0.32	+1.9
1,315,732	-		IAI47_06455	0.33	-0.5
1,316,031	+		IAI47_06455	0.46	-0.3
1,316,098	-		IAI47_06455	0.49	+0.3
1,316,121	-		IAI47_06455	0.50	+1.1
1,316,121	-		IAI47_06455	0.50	+1.3
1,316,171	+		IAI47_06455	0.52	+3.2
1,316,209	-		IAI47_06455	0.54	-0.2
1,316,235	-		IAI47_06455	0.55	+1.3
1,316,255	-		IAI47_06455	0.56	+1.3
1,316,255	-		IAI47_06455	0.56	+0.3
1,316,262	-		IAI47_06455	0.56	+0.1
1,316,430	+		IAI47_06455	0.63	+0.6
1,316,526	-		IAI47_06455	0.68	+0.3
1,316,675	+		IAI47_06455	0.74	-0.3
1,316,748	-		IAI47_06455	0.77	+0.7
1,316,802	-		IAI47_06455	0.80	-0.3
1,316,802	-		IAI47_06455	0.80	+1.5
1,316,921	+		IAI47_06455	0.85	+0.9
1,316,921	+		IAI47_06455	0.85	+0.7
1,316,922	-		IAI47_06455	0.85	+1.3
1,316,922	-		IAI47_06455	0.85	+0.7
1,316,922	-		IAI47_06455	0.85	+2.1
1,316,984	+		IAI47_06455	0.88	+1.3
1,317,030	-		IAI47_06455	0.90	+0.3
1,317,036	-				+0.6
1,317,082	-				-0.3
1,317,082	-				+0.7
1,317,272	-				-0.4
1,317,276	-				+0.0
1,317,276	-				-1.7
1,317,319	+				-0.1
1,317,320	-				+0.0
1,317,320	-				+0.3
1,317,328	+				-2.3
1,317,328	+				-0.3
1,317,329	-				-0.0
1,317,329	-				-0.4
1,317,329	-				-1.4
1,317,329	-				+0.1
1,317,329	-				-1.1
1,317,342	-				-0.4
1,317,360	-				-0.9
1,317,360	-				-1.1
1,317,360	-				+0.3
1,317,360	-				-0.5
1,317,360	-				+0.5
1,317,366	-				+0.3
1,317,388	-				-0.2
1,317,388	-				-0.9
1,317,392	-				-1.7
1,317,392	-				+0.3
1,317,392	-				-3.4
1,317,392	-				+0.3
1,317,392	-				-0.1
1,317,392	-				+1.1
1,317,392	-				-0.9
1,317,417	-				+1.1
1,317,460	+				+0.6
1,317,460	+				+1.6
1,317,460	+				+1.3
1,317,461	-				+1.0
1,317,493	+				-1.5
1,317,493	+				+0.3
1,317,493	+				+2.3
1,317,493	+				+2.6
1,317,494	-				+0.1
1,317,494	-				-0.1
1,317,494	-				+0.3
1,317,535	+				+0.1
1,317,535	+				+1.9
1,317,535	+				-0.3
1,317,535	+				-0.0
1,317,535	+				-0.1
1,317,536	-				+0.2
1,317,538	+				+1.6
1,317,538	+				-2.0
1,317,539	-				+0.9
1,317,539	-				-0.2
1,317,539	-				-0.1
1,317,539	-				+0.2
1,317,539	-				-1.1
1,317,603	+				+0.5
1,317,657	+				+0.7
1,317,657	+				-0.3
1,317,657	+				-0.8
1,317,657	+				+2.2
1,317,658	-				+1.1
1,317,658	-				-0.7
1,317,658	-				+0.9
1,317,658	-				-0.2
1,317,658	-				+1.7
1,317,658	-				+0.7
1,317,658	-				-0.2
1,317,662	+				+1.1
1,317,771	+				-0.7
1,317,772	-				+0.7
1,317,772	-				+0.9