Strain Fitness in Pantoea sp. MT58 around IAI47_06450

Experiment: Ying_Others16 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_06440 and IAI47_06445 are separated by 139 nucleotidesIAI47_06445 and IAI47_06450 are separated by 2 nucleotidesIAI47_06450 and IAI47_06455 are separated by 72 nucleotides IAI47_06440: IAI47_06440 - nicotinamide mononucleotide deamidase-related protein YfaY, at 1,312,177 to 1,313,373 _06440 IAI47_06445: IAI47_06445 - 2Fe-2S ferredoxin-like protein, at 1,313,513 to 1,313,773 _06445 IAI47_06450: IAI47_06450 - ribonucleotide-diphosphate reductase subunit beta, at 1,313,776 to 1,314,906 _06450 IAI47_06455: IAI47_06455 - ribonucleoside-diphosphate reductase subunit alpha, at 1,314,979 to 1,317,264 _06455 Position (kb) 1313 1314 1315Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1312.807 kb on + strand, within IAI47_06440at 1312.807 kb on + strand, within IAI47_06440at 1312.901 kb on + strand, within IAI47_06440at 1312.901 kb on + strand, within IAI47_06440at 1312.902 kb on - strand, within IAI47_06440at 1312.917 kb on + strand, within IAI47_06440at 1312.917 kb on + strand, within IAI47_06440at 1312.917 kb on + strand, within IAI47_06440at 1312.917 kb on + strand, within IAI47_06440at 1312.917 kb on + strand, within IAI47_06440at 1312.918 kb on - strand, within IAI47_06440at 1312.918 kb on - strand, within IAI47_06440at 1312.918 kb on - strand, within IAI47_06440at 1312.918 kb on - strand, within IAI47_06440at 1313.002 kb on + strand, within IAI47_06440at 1313.002 kb on + strand, within IAI47_06440at 1313.002 kb on + strand, within IAI47_06440at 1313.002 kb on + strand, within IAI47_06440at 1313.003 kb on - strand, within IAI47_06440at 1313.003 kb on - strand, within IAI47_06440at 1313.003 kb on - strand, within IAI47_06440at 1313.003 kb on - strand, within IAI47_06440at 1313.020 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.193 kb on - strand, within IAI47_06440at 1313.193 kb on - strand, within IAI47_06440at 1313.193 kb on - strand, within IAI47_06440at 1313.193 kb on - strand, within IAI47_06440at 1313.193 kb on - strand, within IAI47_06440at 1313.193 kb on - strand, within IAI47_06440at 1313.196 kb on + strand, within IAI47_06440at 1313.196 kb on + strand, within IAI47_06440at 1313.196 kb on + strand, within IAI47_06440at 1313.196 kb on + strand, within IAI47_06440at 1313.197 kb on - strand, within IAI47_06440at 1313.197 kb on - strand, within IAI47_06440at 1313.247 kb on + strand, within IAI47_06440at 1313.248 kb on - strand, within IAI47_06440at 1313.248 kb on - strand, within IAI47_06440at 1313.292 kb on + strandat 1313.292 kb on + strandat 1313.292 kb on + strandat 1313.293 kb on - strandat 1313.293 kb on - strandat 1313.293 kb on - strandat 1313.293 kb on - strandat 1313.293 kb on - strandat 1313.293 kb on - strandat 1313.293 kb on - strandat 1313.310 kb on - strandat 1313.310 kb on - strandat 1313.356 kb on - strandat 1313.415 kb on + strandat 1313.415 kb on + strandat 1313.415 kb on + strandat 1313.415 kb on + strandat 1313.416 kb on - strandat 1313.416 kb on - strandat 1313.416 kb on - strandat 1313.416 kb on - strandat 1313.459 kb on + strandat 1313.459 kb on + strandat 1313.459 kb on + strandat 1313.460 kb on - strandat 1313.460 kb on - strandat 1313.460 kb on - strandat 1313.460 kb on - strandat 1313.460 kb on - strandat 1313.463 kb on + strandat 1313.463 kb on + strandat 1313.463 kb on + strandat 1313.463 kb on + strandat 1313.464 kb on - strandat 1313.464 kb on - strandat 1313.464 kb on - strandat 1313.464 kb on - strandat 1313.479 kb on - strandat 1313.479 kb on - strandat 1313.514 kb on + strandat 1313.514 kb on + strandat 1313.514 kb on + strandat 1313.515 kb on - strandat 1313.515 kb on - strandat 1313.515 kb on - strandat 1313.515 kb on - strandat 1313.516 kb on + strandat 1313.516 kb on + strandat 1313.516 kb on + strandat 1313.516 kb on + strandat 1313.517 kb on - strandat 1313.517 kb on - strandat 1313.517 kb on - strandat 1313.517 kb on - strandat 1313.517 kb on - strandat 1313.539 kb on + strand, within IAI47_06445at 1313.601 kb on + strand, within IAI47_06445at 1313.601 kb on + strand, within IAI47_06445at 1313.680 kb on + strand, within IAI47_06445at 1313.680 kb on + strand, within IAI47_06445at 1313.681 kb on - strand, within IAI47_06445at 1313.681 kb on - strand, within IAI47_06445at 1313.681 kb on - strand, within IAI47_06445at 1313.681 kb on - strand, within IAI47_06445at 1313.681 kb on - strand, within IAI47_06445at 1313.755 kb on + strandat 1313.755 kb on + strandat 1313.756 kb on - strandat 1313.756 kb on - strandat 1313.756 kb on - strandat 1313.777 kb on + strandat 1313.778 kb on - strandat 1313.778 kb on - strandat 1313.958 kb on + strand, within IAI47_06450at 1313.976 kb on - strand, within IAI47_06450at 1314.039 kb on - strand, within IAI47_06450at 1314.039 kb on - strand, within IAI47_06450at 1314.163 kb on - strand, within IAI47_06450at 1314.163 kb on - strand, within IAI47_06450at 1314.279 kb on - strand, within IAI47_06450at 1314.322 kb on - strand, within IAI47_06450at 1314.323 kb on + strand, within IAI47_06450at 1314.323 kb on + strand, within IAI47_06450at 1314.323 kb on + strand, within IAI47_06450at 1314.324 kb on - strand, within IAI47_06450at 1314.324 kb on - strand, within IAI47_06450at 1314.324 kb on - strand, within IAI47_06450at 1314.379 kb on - strand, within IAI47_06450at 1314.379 kb on - strand, within IAI47_06450at 1314.448 kb on - strand, within IAI47_06450at 1314.448 kb on - strand, within IAI47_06450at 1314.500 kb on - strand, within IAI47_06450at 1314.539 kb on + strand, within IAI47_06450at 1314.540 kb on - strand, within IAI47_06450at 1314.540 kb on - strand, within IAI47_06450at 1314.685 kb on - strand, within IAI47_06450at 1314.691 kb on - strand, within IAI47_06450at 1314.806 kb on + strandat 1314.899 kb on + strandat 1314.923 kb on + strandat 1314.988 kb on - strandat 1315.021 kb on - strandat 1315.021 kb on - strandat 1315.073 kb on + strandat 1315.290 kb on - strand, within IAI47_06455at 1315.429 kb on - strand, within IAI47_06455at 1315.429 kb on - strand, within IAI47_06455at 1315.429 kb on - strand, within IAI47_06455at 1315.518 kb on - strand, within IAI47_06455at 1315.548 kb on - strand, within IAI47_06455at 1315.617 kb on - strand, within IAI47_06455at 1315.698 kb on - strand, within IAI47_06455at 1315.701 kb on - strand, within IAI47_06455at 1315.707 kb on - strand, within IAI47_06455at 1315.732 kb on - strand, within IAI47_06455

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
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1,312,807 + IAI47_06440 0.53 +0.5
1,312,807 + IAI47_06440 0.53 +1.5
1,312,901 + IAI47_06440 0.60 +0.6
1,312,901 + IAI47_06440 0.60 -0.4
1,312,902 - IAI47_06440 0.61 +1.2
1,312,917 + IAI47_06440 0.62 +0.7
1,312,917 + IAI47_06440 0.62 +0.3
1,312,917 + IAI47_06440 0.62 -0.3
1,312,917 + IAI47_06440 0.62 -0.1
1,312,917 + IAI47_06440 0.62 -0.2
1,312,918 - IAI47_06440 0.62 -0.5
1,312,918 - IAI47_06440 0.62 +0.3
1,312,918 - IAI47_06440 0.62 -0.9
1,312,918 - IAI47_06440 0.62 -0.3
1,313,002 + IAI47_06440 0.69 +1.3
1,313,002 + IAI47_06440 0.69 -1.1
1,313,002 + IAI47_06440 0.69 +0.2
1,313,002 + IAI47_06440 0.69 -0.7
1,313,003 - IAI47_06440 0.69 +1.6
1,313,003 - IAI47_06440 0.69 -1.0
1,313,003 - IAI47_06440 0.69 +0.3
1,313,003 - IAI47_06440 0.69 -0.5
1,313,020 + IAI47_06440 0.70 +0.6
1,313,192 + IAI47_06440 0.85 +0.7
1,313,192 + IAI47_06440 0.85 -0.4
1,313,192 + IAI47_06440 0.85 +0.1
1,313,192 + IAI47_06440 0.85 +0.3
1,313,192 + IAI47_06440 0.85 +2.1
1,313,192 + IAI47_06440 0.85 -0.5
1,313,192 + IAI47_06440 0.85 -0.7
1,313,192 + IAI47_06440 0.85 -0.7
1,313,192 + IAI47_06440 0.85 +0.3
1,313,192 + IAI47_06440 0.85 -0.1
1,313,192 + IAI47_06440 0.85 -0.6
1,313,193 - IAI47_06440 0.85 +0.3
1,313,193 - IAI47_06440 0.85 -1.1
1,313,193 - IAI47_06440 0.85 +0.9
1,313,193 - IAI47_06440 0.85 +1.2
1,313,193 - IAI47_06440 0.85 -0.1
1,313,193 - IAI47_06440 0.85 -0.0
1,313,196 + IAI47_06440 0.85 -0.2
1,313,196 + IAI47_06440 0.85 -0.3
1,313,196 + IAI47_06440 0.85 +0.9
1,313,196 + IAI47_06440 0.85 +0.7
1,313,197 - IAI47_06440 0.85 -1.0
1,313,197 - IAI47_06440 0.85 -0.4
1,313,247 + IAI47_06440 0.89 -0.1
1,313,248 - IAI47_06440 0.89 -0.0
1,313,248 - IAI47_06440 0.89 +1.6
1,313,292 + +0.8
1,313,292 + +0.1
1,313,292 + -0.5
1,313,293 - +1.9
1,313,293 - -1.3
1,313,293 - -1.0
1,313,293 - -0.3
1,313,293 - +0.6
1,313,293 - -0.3
1,313,293 - +0.3
1,313,310 - +0.1
1,313,310 - +1.6
1,313,356 - -0.5
1,313,415 + -0.0
1,313,415 + +0.3
1,313,415 + +0.9
1,313,415 + -3.0
1,313,416 - -0.2
1,313,416 - +1.3
1,313,416 - -0.1
1,313,416 - +0.8
1,313,459 + -0.5
1,313,459 + +1.3
1,313,459 + -0.4
1,313,460 - -1.1
1,313,460 - +0.1
1,313,460 - -0.3
1,313,460 - -0.7
1,313,460 - -0.2
1,313,463 + +2.1
1,313,463 + +0.6
1,313,463 + -0.1
1,313,463 + +0.5
1,313,464 - -0.1
1,313,464 - +0.3
1,313,464 - -0.3
1,313,464 - +2.3
1,313,479 - +0.7
1,313,479 - +1.8
1,313,514 + -0.7
1,313,514 + -0.3
1,313,514 + -1.7
1,313,515 - -0.0
1,313,515 - +0.4
1,313,515 - +0.3
1,313,515 - -1.1
1,313,516 + -0.7
1,313,516 + -1.3
1,313,516 + +1.1
1,313,516 + +0.3
1,313,517 - +0.3
1,313,517 - +0.6
1,313,517 - +1.4
1,313,517 - +1.1
1,313,517 - -0.6
1,313,539 + IAI47_06445 0.10 +0.8
1,313,601 + IAI47_06445 0.34 +1.0
1,313,601 + IAI47_06445 0.34 -0.2
1,313,680 + IAI47_06445 0.64 +0.4
1,313,680 + IAI47_06445 0.64 -0.4
1,313,681 - IAI47_06445 0.64 +2.8
1,313,681 - IAI47_06445 0.64 +0.3
1,313,681 - IAI47_06445 0.64 +2.9
1,313,681 - IAI47_06445 0.64 +1.5
1,313,681 - IAI47_06445 0.64 -0.9
1,313,755 + +0.0
1,313,755 + +0.1
1,313,756 - +0.7
1,313,756 - -0.6
1,313,756 - -0.7
1,313,777 + +0.3
1,313,778 - -0.7
1,313,778 - -1.3
1,313,958 + IAI47_06450 0.16 +0.1
1,313,976 - IAI47_06450 0.18 +2.3
1,314,039 - IAI47_06450 0.23 +3.0
1,314,039 - IAI47_06450 0.23 +1.1
1,314,163 - IAI47_06450 0.34 +0.3
1,314,163 - IAI47_06450 0.34 +0.7
1,314,279 - IAI47_06450 0.44 +1.1
1,314,322 - IAI47_06450 0.48 -0.7
1,314,323 + IAI47_06450 0.48 +0.3
1,314,323 + IAI47_06450 0.48 +1.1
1,314,323 + IAI47_06450 0.48 +1.1
1,314,324 - IAI47_06450 0.48 +2.1
1,314,324 - IAI47_06450 0.48 +0.3
1,314,324 - IAI47_06450 0.48 +0.9
1,314,379 - IAI47_06450 0.53 -0.4
1,314,379 - IAI47_06450 0.53 +0.1
1,314,448 - IAI47_06450 0.59 -0.1
1,314,448 - IAI47_06450 0.59 +1.2
1,314,500 - IAI47_06450 0.64 +0.3
1,314,539 + IAI47_06450 0.67 +1.3
1,314,540 - IAI47_06450 0.68 +1.3
1,314,540 - IAI47_06450 0.68 +1.3
1,314,685 - IAI47_06450 0.80 +1.1
1,314,691 - IAI47_06450 0.81 -0.3
1,314,806 + +0.0
1,314,899 + +1.9
1,314,923 + +0.7
1,314,988 - +0.3
1,315,021 - -1.3
1,315,021 - +0.1
1,315,073 + -2.5
1,315,290 - IAI47_06455 0.14 +1.9
1,315,429 - IAI47_06455 0.20 +0.7
1,315,429 - IAI47_06455 0.20 +1.9
1,315,429 - IAI47_06455 0.20 -0.7
1,315,518 - IAI47_06455 0.24 +2.3
1,315,548 - IAI47_06455 0.25 +0.3
1,315,617 - IAI47_06455 0.28 +2.3
1,315,698 - IAI47_06455 0.31 +0.3
1,315,701 - IAI47_06455 0.32 -0.3
1,315,707 - IAI47_06455 0.32 +1.9
1,315,732 - IAI47_06455 0.33 -0.5

Or see this region's nucleotide sequence