Strain Fitness in Pantoea sp. MT58 around IAI47_06380

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
1,296,425	+		IAI47_06370	0.74	-0.0
1,296,486	-		IAI47_06370	0.77	-2.7
1,296,486	-		IAI47_06370	0.77	-2.0
1,296,532	+		IAI47_06370	0.80	-0.7
1,296,556	+		IAI47_06370	0.81	-2.0
1,296,557	-		IAI47_06370	0.81	-2.5
1,296,557	-		IAI47_06370	0.81	-0.7
1,296,617	-				-0.7
1,296,731	+				-0.7
1,296,764	+				-2.5
1,296,852	+				-2.5
1,296,852	+				+0.3
1,296,853	-				-1.3
1,296,854	+				-0.7
1,296,855	-				-1.3
1,296,855	-				-1.3
1,296,863	-				-0.7
1,296,866	-				-1.3
1,296,878	-				-2.3
1,296,896	+				-2.0
1,296,900	+				-1.7
1,296,900	+				-0.7
1,296,900	+				-1.7
1,296,901	-				-1.3
1,296,901	-				-2.0
1,296,901	-				-2.3
1,296,924	+				-1.7
1,296,939	+				-2.0
1,297,098	-				-0.7
1,297,098	-		IAI47_06375	0.36	+0.3
1,297,186	+		IAI47_06375	0.54	-0.7
1,297,219	+		IAI47_06375	0.60	-1.7
1,297,437	-				-0.7
1,297,495	+				-1.3
1,297,521	+				-1.3
1,297,521	+				-0.7
1,297,713	+		IAI47_06380	0.22	-2.3
1,297,714	-		IAI47_06380	0.22	-2.3
1,297,813	+		IAI47_06380	0.29	-0.7
1,297,824	+		IAI47_06380	0.30	-0.7
1,297,825	-		IAI47_06380	0.30	-1.3
1,297,890	-		IAI47_06380	0.35	-0.7
1,297,952	+		IAI47_06380	0.40	-1.7
1,297,953	-		IAI47_06380	0.40	-1.3
1,297,953	-		IAI47_06380	0.40	-2.3
1,298,075	-		IAI47_06380	0.49	-0.7
1,298,138	+		IAI47_06380	0.54	-0.7
1,298,569	+		IAI47_06380	0.86	-1.7
1,298,705	+				-1.3
1,298,705	+				-0.6
1,298,705	+				+0.3
1,298,705	+				+0.6
1,298,706	-				-1.3
1,298,757	+				+0.1
1,298,757	+				-1.4
1,298,823	+				+0.1
1,298,823	+				-2.3
1,298,823	+				-0.8
1,298,823	+				-1.7
1,298,823	+				-1.3
1,298,823	+				+2.1
1,298,824	-				-1.7
1,298,824	-				-1.3
1,298,830	+				-0.7
1,298,852	+				+0.7
1,298,869	-				-2.3
1,298,869	-				-1.3
1,298,875	-				-3.1
1,298,885	+				-1.7
1,299,224	+		IAI47_06385	0.13	-1.7
1,299,225	-		IAI47_06385	0.13	-1.3
1,299,321	+				-0.7
1,299,350	-		IAI47_06385	0.18	-2.5
1,299,385	+		IAI47_06385	0.19	-1.7
1,299,406	+		IAI47_06385	0.20	-2.9
1,299,406	+		IAI47_06385	0.20	-2.0
1,299,407	-		IAI47_06385	0.20	-2.3
1,299,493	-		IAI47_06385	0.23	-1.7
1,299,573	+		IAI47_06385	0.26	-1.3
1,299,574	-				-1.7
1,299,638	+		IAI47_06385	0.28	-0.7
1,299,638	+		IAI47_06385	0.28	+0.3
1,299,639	-		IAI47_06385	0.28	+0.3
1,299,639	-		IAI47_06385	0.28	-1.7
1,299,646	+		IAI47_06385	0.29	+0.3
1,299,682	+		IAI47_06385	0.30	-1.3
1,299,741	+		IAI47_06385	0.32	-2.3