Strain Fitness in Pantoea sp. MT58 around IAI47_06340

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
1,287,787	+		IAI47_06330	0.32	+0.2
1,287,787	+		IAI47_06330	0.32	-1.5
1,287,787	+		IAI47_06330	0.32	-0.3
1,287,787	+		IAI47_06330	0.32	-0.8
1,287,787	+		IAI47_06330	0.32	-0.5
1,287,809	-		IAI47_06330	0.37	-0.1
1,287,946	+		IAI47_06330	0.67	+1.5
1,287,946	+		IAI47_06330	0.67	+1.0
1,287,947	-		IAI47_06330	0.68	-0.7
1,287,947	-		IAI47_06330	0.68	+1.2
1,287,947	-		IAI47_06330	0.68	-0.0
1,287,947	-		IAI47_06330	0.68	-0.1
1,288,022	+		IAI47_06330	0.84	+0.2
1,288,022	+		IAI47_06330	0.84	+0.9
1,288,057	+				+0.5
1,288,058	-				-0.0
1,288,058	-				+0.8
1,288,092	-				+0.1
1,288,092	-				-1.6
1,288,117	+				-0.4
1,288,117	+				-0.1
1,288,118	-				-0.9
1,288,118	-				+1.2
1,288,121	+				+2.1
1,288,122	-				-0.7
1,288,128	-				+0.3
1,288,281	+				-1.3
1,288,282	-				+0.5
1,288,283	+				+0.2
1,288,283	+				-0.1
1,288,284	-				-0.3
1,288,284	-				-0.3
1,288,284	-				-0.7
1,288,284	-				+0.1
1,288,357	-		IAI47_06335	0.24	-0.4
1,288,430	+		IAI47_06335	0.39	-0.7
1,288,431	-		IAI47_06335	0.39	-0.3
1,288,433	+		IAI47_06335	0.39	-0.7
1,288,434	-		IAI47_06335	0.39	+0.9
1,288,434	-		IAI47_06335	0.39	-1.3
1,288,481	+		IAI47_06335	0.49	+0.3
1,288,481	+		IAI47_06335	0.49	-0.3
1,288,481	+		IAI47_06335	0.49	-0.2
1,288,481	+		IAI47_06335	0.49	+0.2
1,288,482	-		IAI47_06335	0.49	+1.9
1,288,482	-		IAI47_06335	0.49	+0.4
1,288,482	-		IAI47_06335	0.49	-0.2
1,288,482	-		IAI47_06335	0.49	-0.9
1,288,554	+		IAI47_06335	0.64	-0.9
1,288,554	+		IAI47_06335	0.64	+2.6
1,288,555	-		IAI47_06335	0.64	-0.7
1,288,565	+		IAI47_06335	0.66	-0.4
1,288,565	+		IAI47_06335	0.66	+0.3
1,288,566	-		IAI47_06335	0.66	-0.4
1,288,574	+		IAI47_06335	0.68	-0.1
1,288,574	+		IAI47_06335	0.68	+1.3
1,288,574	+		IAI47_06335	0.68	-0.4
1,288,574	+		IAI47_06335	0.68	-1.1
1,288,574	+		IAI47_06335	0.68	-0.4
1,288,574	+		IAI47_06335	0.68	+0.3
1,288,575	-		IAI47_06335	0.68	+0.3
1,288,575	-		IAI47_06335	0.68	-1.3
1,288,587	+		IAI47_06335	0.70	-0.3
1,288,587	+		IAI47_06335	0.70	-0.4
1,288,587	+		IAI47_06335	0.70	+0.3
1,288,589	+		IAI47_06335	0.71	+0.3
1,288,589	+		IAI47_06335	0.71	-2.0
1,288,589	+		IAI47_06335	0.71	-1.4
1,288,589	+		IAI47_06335	0.71	+1.3
1,288,607	+		IAI47_06335	0.74	-1.6
1,288,647	+		IAI47_06335	0.82	-0.9
1,288,647	+		IAI47_06335	0.82	+0.4
1,288,647	+		IAI47_06335	0.82	+0.6
1,288,648	-		IAI47_06335	0.83	-0.2
1,288,660	+		IAI47_06335	0.85	-0.7
1,288,660	+		IAI47_06335	0.85	-2.0
1,288,660	+		IAI47_06335	0.85	-0.3
1,288,661	-		IAI47_06335	0.85	-0.0
1,288,661	-		IAI47_06335	0.85	+1.3
1,288,661	-		IAI47_06335	0.85	-0.5
1,288,661	-		IAI47_06335	0.85	+0.8
1,288,690	-				+0.7
1,288,690	-				+0.7
1,288,696	+				-0.5
1,288,696	+				-0.3
1,288,696	+				-2.3
1,288,696	+				-1.4
1,288,696	+				+0.3
1,288,697	-				+0.3
1,288,697	-				-0.5
1,288,697	-				+1.3
1,288,697	-				+0.7
1,288,707	+				-0.7
1,288,753	+				-0.1
1,288,753	+				-0.0
1,288,754	-				+0.8
1,288,754	-				+0.3
1,288,766	+				+1.3
1,288,766	+				+0.6
1,288,775	+				-0.0
1,288,846	-		IAI47_06340	0.15	-0.3
1,288,872	+		IAI47_06340	0.19	+0.7
1,288,873	-		IAI47_06340	0.19	+1.3
1,288,935	+		IAI47_06340	0.28	+0.2
1,288,935	+		IAI47_06340	0.28	-1.1
1,288,935	+		IAI47_06340	0.28	+0.0
1,288,936	-		IAI47_06340	0.29	-0.0
1,288,937	+		IAI47_06340	0.29	+0.6
1,288,937	+		IAI47_06340	0.29	-1.3
1,288,937	+		IAI47_06340	0.29	+1.2
1,288,937	+		IAI47_06340	0.29	-0.9
1,288,938	-		IAI47_06340	0.29	-1.0
1,288,938	-		IAI47_06340	0.29	-0.9
1,288,938	-		IAI47_06340	0.29	-2.3
1,288,938	-		IAI47_06340	0.29	-1.3
1,288,950	+		IAI47_06340	0.31	+0.3
1,289,043	+		IAI47_06340	0.45	+0.3
1,289,043	+		IAI47_06340	0.45	+0.6
1,289,044	-		IAI47_06340	0.45	-0.9
1,289,044	-		IAI47_06340	0.45	+1.3
1,289,044	-		IAI47_06340	0.45	-0.4
1,289,044	-		IAI47_06340	0.45	-0.7
1,289,044	-		IAI47_06340	0.45	+0.5
1,289,111	+		IAI47_06340	0.55	-0.7
1,289,133	+		IAI47_06340	0.58	+1.9
1,289,158	-		IAI47_06340	0.62	+0.5
1,289,158	-		IAI47_06340	0.62	+1.5
1,289,176	+		IAI47_06340	0.65	+1.3
1,289,177	-		IAI47_06340	0.65	-0.2
1,289,222	+		IAI47_06340	0.72	-1.0
1,289,223	-		IAI47_06340	0.72	+0.3
1,289,286	+		IAI47_06340	0.82	+0.7
1,289,286	+		IAI47_06340	0.82	-0.4
1,289,286	+		IAI47_06340	0.82	+0.4
1,289,287	-		IAI47_06340	0.82	-1.9
1,289,287	-		IAI47_06340	0.82	-0.3
1,289,287	-		IAI47_06340	0.82	-0.7
1,289,287	-		IAI47_06340	0.82	+0.3
1,289,287	-		IAI47_06340	0.82	+1.6
1,289,289	+		IAI47_06340	0.82	-0.5
1,289,289	+		IAI47_06340	0.82	-1.7
1,289,289	+		IAI47_06340	0.82	-0.7
1,289,289	+		IAI47_06340	0.82	+0.7
1,289,290	-		IAI47_06340	0.82	-0.5
1,289,290	-		IAI47_06340	0.82	-0.7
1,289,290	-		IAI47_06340	0.82	-0.7
1,289,290	-		IAI47_06340	0.82	-0.3
1,289,332	-		IAI47_06340	0.89	-0.1
1,289,358	-				+2.1
1,289,358	-				-0.0
1,289,385	+				+0.6
1,289,385	+				+1.0
1,289,385	+				+1.9
1,289,391	+				-0.8
1,289,391	+				+0.6
1,289,391	+				-0.5
1,289,391	+				-2.0
1,289,404	+				+1.0
1,289,404	+				-0.2
1,289,404	+				-1.7
1,289,405	-				-1.2
1,289,437	+				+0.9
1,289,438	-				-0.4
1,289,438	-				+1.0
1,289,438	-				-0.2
1,289,447	+				-0.2
1,289,447	+				-0.1
1,289,448	-				-0.4
1,289,448	-				+0.3
1,289,448	-				+0.7
1,289,448	-				+1.3
1,289,506	+		IAI47_06345	0.12	+1.1
1,289,507	-		IAI47_06345	0.12	+1.2
1,289,507	-		IAI47_06345	0.12	+2.6
1,289,576	+		IAI47_06345	0.23	-1.2
1,289,606	+		IAI47_06345	0.28	-0.3
1,289,606	+		IAI47_06345	0.28	+0.2
1,289,606	+		IAI47_06345	0.28	-1.7
1,289,606	+		IAI47_06345	0.28	-1.3
1,289,606	+		IAI47_06345	0.28	-0.6
1,289,606	+		IAI47_06345	0.28	-0.4
1,289,606	+		IAI47_06345	0.28	+1.9
1,289,606	+		IAI47_06345	0.28	-1.1
1,289,606	+		IAI47_06345	0.28	-0.7
1,289,606	+		IAI47_06345	0.28	-1.7
1,289,607	-				+0.3
1,289,607	-		IAI47_06345	0.28	-0.7
1,289,607	-		IAI47_06345	0.28	-0.3
1,289,607	-		IAI47_06345	0.28	+2.3
1,289,607	-		IAI47_06345	0.28	+0.4
1,289,607	-		IAI47_06345	0.28	-1.0
1,289,611	+		IAI47_06345	0.29	-0.0
1,289,611	+		IAI47_06345	0.29	+0.9
1,289,611	+		IAI47_06345	0.29	-0.3
1,289,611	+		IAI47_06345	0.29	+0.3
1,289,612	-		IAI47_06345	0.29	-0.5
1,289,612	-		IAI47_06345	0.29	+0.5
1,289,612	-		IAI47_06345	0.29	-0.7
1,289,612	-		IAI47_06345	0.29	+0.8
1,289,612	-		IAI47_06345	0.29	-0.7
1,289,660	+		IAI47_06345	0.37	-1.1
1,289,660	+		IAI47_06345	0.37	-0.3
1,289,660	+		IAI47_06345	0.37	+2.8
1,289,661	-		IAI47_06345	0.38	-1.3
1,289,674	+		IAI47_06345	0.40	+0.9
1,289,689	+		IAI47_06345	0.42	+1.3
1,289,758	+		IAI47_06345	0.54	+0.3
1,289,758	+		IAI47_06345	0.54	-0.7
1,289,758	+		IAI47_06345	0.54	-0.9
1,289,758	+		IAI47_06345	0.54	-0.9
1,289,759	-		IAI47_06345	0.54	-0.1
1,289,759	-		IAI47_06345	0.54	-1.1
1,289,759	-		IAI47_06345	0.54	-0.0
1,289,759	-		IAI47_06345	0.54	+0.8
1,289,759	-		IAI47_06345	0.54	+0.7
1,289,782	+		IAI47_06345	0.58	-0.7
1,289,782	+		IAI47_06345	0.58	-0.0
1,289,783	-		IAI47_06345	0.58	+0.1
1,289,783	-		IAI47_06345	0.58	-0.3
1,289,783	-		IAI47_06345	0.58	+0.7
1,289,783	-		IAI47_06345	0.58	+0.3
1,289,783	-		IAI47_06345	0.58	-0.7
1,289,783	-		IAI47_06345	0.58	-0.7
1,289,783	-		IAI47_06345	0.58	+0.3
1,289,783	-		IAI47_06345	0.58	-0.1
1,289,785	+		IAI47_06345	0.58	+0.3
1,289,785	+		IAI47_06345	0.58	-0.2
1,289,785	+		IAI47_06345	0.58	-2.0
1,289,786	-		IAI47_06345	0.58	+0.3
1,289,786	-		IAI47_06345	0.58	-0.5
1,289,786	-		IAI47_06345	0.58	+0.2
1,289,786	-		IAI47_06345	0.58	+0.3
1,289,786	-		IAI47_06345	0.58	-0.8
1,289,786	-		IAI47_06345	0.58	-0.3
1,289,802	+		IAI47_06345	0.61	+0.1
1,289,803	-		IAI47_06345	0.61	+0.3
1,289,836	+		IAI47_06345	0.67	-2.0
1,289,836	+		IAI47_06345	0.67	+0.1
1,289,836	+		IAI47_06345	0.67	+0.1
1,289,855	+		IAI47_06345	0.70	-0.9
1,289,855	+		IAI47_06345	0.70	-1.4
1,289,855	+		IAI47_06345	0.70	+0.6
1,289,855	+		IAI47_06345	0.70	+0.6
1,289,856	-		IAI47_06345	0.70	-0.2
1,289,856	-		IAI47_06345	0.70	-0.3
1,289,856	-		IAI47_06345	0.70	+0.7
1,289,856	-		IAI47_06345	0.70	+0.8
1,289,856	-		IAI47_06345	0.70	-0.1
1,289,856	-		IAI47_06345	0.70	+0.9
1,289,856	-		IAI47_06345	0.70	-0.7
1,289,868	-		IAI47_06345	0.72	+0.3
1,289,921	+		IAI47_06345	0.81	+0.4
1,289,921	+		IAI47_06345	0.81	+0.8
1,289,922	-		IAI47_06345	0.81	-0.7
1,289,922	-		IAI47_06345	0.81	+1.2
1,289,922	-		IAI47_06345	0.81	-0.7
1,289,987	+				-0.3
1,289,987	+				+0.3
1,289,988	-				+0.1
1,289,996	+				+0.1
1,289,996	+				-0.7
1,289,996	+				+0.2
1,289,996	+				+0.6
1,289,997	-				-0.5
1,289,997	-				+0.8
1,290,081	+				-0.7
1,290,081	+				-0.3
1,290,081	+				-1.0
1,290,082	-				-0.0
1,290,090	+				-0.9
1,290,090	+				+0.5
1,290,091	-				+0.5
1,290,091	-				-2.0
1,290,091	-				+0.3
1,290,092	+				+1.0
1,290,092	+				-0.1
1,290,092	+				+0.8
1,290,093	-				+0.2
1,290,093	-				-1.6
1,290,115	+				-1.5
1,290,115	+				-0.6
1,290,116	-				-0.7
1,290,140	+				-0.3
1,290,141	-				-0.4
1,290,180	-				-0.0
1,290,250	-		IAI47_06350	0.12	-1.3
1,290,288	-		IAI47_06350	0.15	-1.3
1,290,322	+		IAI47_06350	0.18	+1.6
1,290,322	+		IAI47_06350	0.18	+0.8
1,290,322	+		IAI47_06350	0.18	+1.5
1,290,322	+		IAI47_06350	0.18	+0.3
1,290,322	+		IAI47_06350	0.18	+0.2
1,290,322	+		IAI47_06350	0.18	-0.3
1,290,322	+		IAI47_06350	0.18	-0.3
1,290,322	+		IAI47_06350	0.18	+0.3
1,290,323	-		IAI47_06350	0.18	+0.3
1,290,323	-		IAI47_06350	0.18	-1.0
1,290,323	-		IAI47_06350	0.18	-0.9
1,290,323	-		IAI47_06350	0.18	-1.3
1,290,323	-		IAI47_06350	0.18	-0.4
1,290,362	+		IAI47_06350	0.21	-1.0
1,290,362	+		IAI47_06350	0.21	+0.6
1,290,362	+		IAI47_06350	0.21	-0.7
1,290,362	+		IAI47_06350	0.21	-0.4
1,290,362	+		IAI47_06350	0.21	+0.0
1,290,363	-		IAI47_06350	0.21	+0.3
1,290,363	-		IAI47_06350	0.21	+0.1
1,290,400	+		IAI47_06350	0.24	-1.7
1,290,400	+		IAI47_06350	0.24	-0.6