Strain Fitness in Pantoea sp. MT58 around IAI47_06295

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
1,278,894	-		IAI47_06285	0.84	-0.0
1,278,905	+		IAI47_06285	0.85	-1.3
1,278,906	-		IAI47_06285	0.85	-2.0
1,278,906	-		IAI47_06285	0.85	-0.9
1,278,959	+				-0.2
1,278,959	+				+0.9
1,278,960	-				-0.3
1,278,960	-				-0.4
1,278,972	+				-0.1
1,278,993	+				-1.3
1,279,011	+				-0.7
1,279,011	+				-0.3
1,279,011	+				-1.1
1,279,012	-				+0.4
1,279,037	+				+1.4
1,279,037	+				+0.9
1,279,037	+				+0.2
1,279,038	-				-1.3
1,279,135	+				+0.6
1,279,135	+				+0.6
1,279,135	+				+1.3
1,279,136	-				-0.3
1,279,136	-				-1.5
1,279,136	-				+0.6
1,279,136	-				-0.7
1,279,136	-				-0.3
1,279,136	-				-0.3
1,279,136	-				-0.7
1,279,142	-				-1.1
1,279,142	-				+1.0
1,279,142	-				-0.7
1,279,207	+				-1.9
1,279,207	+				-2.1
1,279,207	+				-0.8
1,279,207	+				-1.3
1,279,207	+				+0.3
1,279,207	+				-0.8
1,279,207	+				+1.4
1,279,207	+				-0.5
1,279,207	+				-0.9
1,279,207	+				-0.4
1,279,208	-				+0.3
1,279,208	-				+1.6
1,279,208	-				-1.6
1,279,208	-				-0.5
1,279,208	-				-1.9
1,279,208	-				-0.9
1,279,208	-				+0.6
1,279,208	-				+0.3
1,279,208	-				-2.0
1,279,213	+				-0.0
1,279,213	+				-2.4
1,279,213	+				+1.9
1,279,223	+				+1.3
1,279,223	+				+0.8
1,279,223	+				+0.9
1,279,223	+				-0.5
1,279,223	+				-0.6
1,279,224	-				+0.3
1,279,274	+		IAI47_06290	0.11	+0.7
1,279,274	+		IAI47_06290	0.11	+0.3
1,279,275	-		IAI47_06290	0.11	-0.4
1,279,275	-		IAI47_06290	0.11	+3.1
1,279,354	+		IAI47_06290	0.22	+0.7
1,279,354	+		IAI47_06290	0.22	-0.3
1,279,355	-		IAI47_06290	0.22	-2.4
1,279,388	+		IAI47_06290	0.27	-0.1
1,279,388	+		IAI47_06290	0.27	+0.3
1,279,388	+		IAI47_06290	0.27	+1.9
1,279,389	-		IAI47_06290	0.27	+0.3
1,279,408	+		IAI47_06290	0.30	-0.7
1,279,409	-		IAI47_06290	0.30	-0.1
1,279,409	-		IAI47_06290	0.30	-0.0
1,279,409	-		IAI47_06290	0.30	-2.0
1,279,409	-		IAI47_06290	0.30	-1.5
1,279,409	-		IAI47_06290	0.30	+0.1
1,279,409	-		IAI47_06290	0.30	-0.5
1,279,452	+		IAI47_06290	0.36	+0.1
1,279,489	-		IAI47_06290	0.42	-0.5
1,279,506	+		IAI47_06290	0.44	+0.3
1,279,506	+		IAI47_06290	0.44	-0.1
1,279,506	+		IAI47_06290	0.44	+0.3
1,279,506	+		IAI47_06290	0.44	-2.2
1,279,506	+		IAI47_06290	0.44	+1.1
1,279,506	+		IAI47_06290	0.44	-1.2
1,279,506	+		IAI47_06290	0.44	+0.3
1,279,506	+		IAI47_06290	0.44	+0.3
1,279,507	-		IAI47_06290	0.44	-2.0
1,279,510	+		IAI47_06290	0.45	+0.2
1,279,510	+		IAI47_06290	0.45	+0.3
1,279,510	+		IAI47_06290	0.45	+0.8
1,279,510	+		IAI47_06290	0.45	-0.5
1,279,510	+		IAI47_06290	0.45	+0.5
1,279,511	-		IAI47_06290	0.45	-0.1
1,279,511	-		IAI47_06290	0.45	-0.4
1,279,511	-		IAI47_06290	0.45	-0.4
1,279,511	-		IAI47_06290	0.45	+0.6
1,279,511	-		IAI47_06290	0.45	-0.9
1,279,511	-		IAI47_06290	0.45	+0.6
1,279,511	-		IAI47_06290	0.45	-0.3
1,279,511	-		IAI47_06290	0.45	+0.7
1,279,511	-		IAI47_06290	0.45	+0.4
1,279,519	+		IAI47_06290	0.46	+0.3
1,279,519	+		IAI47_06290	0.46	-0.3
1,279,519	+		IAI47_06290	0.46	-1.3
1,279,519	+		IAI47_06290	0.46	+0.7
1,279,519	+		IAI47_06290	0.46	+1.3
1,279,520	-		IAI47_06290	0.46	-2.0
1,279,548	+		IAI47_06290	0.50	+0.1
1,279,548	+		IAI47_06290	0.50	-0.7
1,279,548	+		IAI47_06290	0.50	-0.8
1,279,548	+		IAI47_06290	0.50	-2.1
1,279,548	+		IAI47_06290	0.50	+0.3
1,279,548	+		IAI47_06290	0.50	-0.7
1,279,549	-		IAI47_06290	0.50	+0.3
1,279,549	-		IAI47_06290	0.50	-0.1
1,279,549	-		IAI47_06290	0.50	-1.4
1,279,549	-		IAI47_06290	0.50	+0.8
1,279,571	+		IAI47_06290	0.54	-0.7
1,279,571	+		IAI47_06290	0.54	-0.5
1,279,571	+		IAI47_06290	0.54	-0.0
1,279,571	+		IAI47_06290	0.54	-1.9
1,279,572	-		IAI47_06290	0.54	-2.3
1,279,572	-		IAI47_06290	0.54	-0.8
1,279,581	+		IAI47_06290	0.55	+0.8
1,279,582	-		IAI47_06290	0.55	-0.9
1,279,645	+		IAI47_06290	0.64	+1.5
1,279,645	+		IAI47_06290	0.64	-0.5
1,279,646	-		IAI47_06290	0.64	-0.0
1,279,646	-		IAI47_06290	0.64	+2.6
1,279,758	+		IAI47_06290	0.81	+1.2
1,279,758	+		IAI47_06290	0.81	-1.0
1,279,759	-		IAI47_06290	0.81	-1.4
1,279,782	+		IAI47_06290	0.84	-0.3
1,279,802	-		IAI47_06290	0.87	+2.7
1,279,802	-		IAI47_06290	0.87	+0.3
1,279,855	+				+0.1
1,279,855	+				-0.6
1,279,856	-				-1.3
1,279,856	-				+0.1
1,279,857	+				-0.2
1,279,857	+				+0.5
1,279,857	+				-1.4
1,279,857	+				-0.4
1,279,857	+				+0.9
1,279,858	-				-0.2
1,279,858	-				+2.0
1,279,858	-				+0.3
1,279,883	-				+0.3
1,279,883	-				+1.9
1,279,894	+				-0.3
1,279,905	-				+0.9
1,279,942	+				+0.9
1,279,942	+				+0.2
1,279,955	-		IAI47_06295	0.10	-1.4
1,280,036	-		IAI47_06295	0.21	+1.3
1,280,044	+		IAI47_06295	0.22	+0.1
1,280,068	+		IAI47_06295	0.26	-0.7
1,280,068	+		IAI47_06295	0.26	-0.3
1,280,069	-		IAI47_06295	0.26	+0.3
1,280,069	-		IAI47_06295	0.26	-1.9
1,280,069	-		IAI47_06295	0.26	+1.3
1,280,072	+		IAI47_06295	0.26	+0.9
1,280,072	+		IAI47_06295	0.26	-0.1
1,280,072	+		IAI47_06295	0.26	-0.1
1,280,072	+		IAI47_06295	0.26	-0.8
1,280,073	-		IAI47_06295	0.26	-1.3
1,280,073	-		IAI47_06295	0.26	-2.2
1,280,073	-		IAI47_06295	0.26	-0.3
1,280,073	-		IAI47_06295	0.26	+1.5
1,280,096	+		IAI47_06295	0.30	-1.6
1,280,096	+		IAI47_06295	0.30	+0.8
1,280,096	+		IAI47_06295	0.30	-2.0
1,280,096	+		IAI47_06295	0.30	+0.3
1,280,096	+		IAI47_06295	0.30	-1.7
1,280,096	+		IAI47_06295	0.30	+0.3
1,280,097	-		IAI47_06295	0.30	-1.0
1,280,100	+		IAI47_06295	0.30	-0.5
1,280,100	+		IAI47_06295	0.30	+0.3
1,280,100	+		IAI47_06295	0.30	+0.7
1,280,100	+		IAI47_06295	0.30	-0.8
1,280,100	+		IAI47_06295	0.30	+0.5
1,280,100	+		IAI47_06295	0.30	-0.8
1,280,100	+		IAI47_06295	0.30	-0.1
1,280,100	+		IAI47_06295	0.30	-0.1
1,280,117	+		IAI47_06295	0.33	+0.3
1,280,117	+		IAI47_06295	0.33	+0.5
1,280,118	-		IAI47_06295	0.33	+0.6
1,280,118	-		IAI47_06295	0.33	+0.3
1,280,118	-		IAI47_06295	0.33	-1.4
1,280,118	-		IAI47_06295	0.33	-0.3
1,280,129	+		IAI47_06295	0.34	-0.7
1,280,129	+		IAI47_06295	0.34	-0.5
1,280,129	+		IAI47_06295	0.34	-1.7
1,280,129	+		IAI47_06295	0.34	+0.0
1,280,129	+		IAI47_06295	0.34	-0.4
1,280,130	-		IAI47_06295	0.34	+0.3
1,280,130	-		IAI47_06295	0.34	+0.6
1,280,130	-		IAI47_06295	0.34	-1.9
1,280,130	-		IAI47_06295	0.34	-0.8
1,280,130	-		IAI47_06295	0.34	-0.1
1,280,130	-		IAI47_06295	0.34	+0.0
1,280,130	-		IAI47_06295	0.34	-1.3
1,280,194	+		IAI47_06295	0.43	-0.0
1,280,194	+		IAI47_06295	0.43	-1.7
1,280,194	+		IAI47_06295	0.43	-1.3
1,280,194	+		IAI47_06295	0.43	-0.9
1,280,194	+		IAI47_06295	0.43	-0.3
1,280,195	-		IAI47_06295	0.44	+0.3
1,280,195	-		IAI47_06295	0.44	+0.6
1,280,195	-		IAI47_06295	0.44	-0.7
1,280,195	-		IAI47_06295	0.44	+1.6
1,280,195	-		IAI47_06295	0.44	+1.9
1,280,195	-		IAI47_06295	0.44	-0.4
1,280,218	+		IAI47_06295	0.47	-1.3
1,280,218	+		IAI47_06295	0.47	-1.4
1,280,218	+		IAI47_06295	0.47	-2.0
1,280,218	+		IAI47_06295	0.47	-0.4
1,280,219	-		IAI47_06295	0.47	-0.7
1,280,219	-		IAI47_06295	0.47	-1.7
1,280,228	+		IAI47_06295	0.48	-1.7
1,280,228	+		IAI47_06295	0.48	-0.3
1,280,228	+		IAI47_06295	0.48	-0.3
1,280,228	+		IAI47_06295	0.48	+0.0
1,280,228	+		IAI47_06295	0.48	-1.2
1,280,228	+		IAI47_06295	0.48	-0.9
1,280,229	-		IAI47_06295	0.48	-0.3
1,280,229	-		IAI47_06295	0.48	+1.3
1,280,229	-		IAI47_06295	0.48	-2.3
1,280,229	-		IAI47_06295	0.48	-1.2
1,280,229	-		IAI47_06295	0.48	-1.0
1,280,297	+		IAI47_06295	0.58	-1.3
1,280,297	+		IAI47_06295	0.58	-0.3
1,280,314	+		IAI47_06295	0.60	-0.9
1,280,314	+		IAI47_06295	0.60	-1.1
1,280,333	-		IAI47_06295	0.63	+0.6
1,280,333	-		IAI47_06295	0.63	-1.2
1,280,333	-		IAI47_06295	0.63	-0.6
1,280,369	+		IAI47_06295	0.68	-0.3
1,280,369	+		IAI47_06295	0.68	-0.5
1,280,369	+		IAI47_06295	0.68	-0.0
1,280,370	-		IAI47_06295	0.68	+1.0
1,280,370	-		IAI47_06295	0.68	-1.1
1,280,370	-		IAI47_06295	0.68	-0.7
1,280,370	-		IAI47_06295	0.68	+2.3
1,280,375	-		IAI47_06295	0.69	-1.4
1,280,455	+		IAI47_06295	0.80	-1.2
1,280,456	-		IAI47_06295	0.80	-1.2
1,280,456	-		IAI47_06295	0.80	-0.9
1,280,458	+		IAI47_06295	0.80	+0.3
1,280,458	+		IAI47_06295	0.80	-1.3
1,280,458	+		IAI47_06295	0.80	+0.1
1,280,459	-		IAI47_06295	0.80	-0.3
1,280,471	+		IAI47_06295	0.82	-0.3
1,280,472	-		IAI47_06295	0.82	+0.0
1,280,472	-		IAI47_06295	0.82	-2.0
1,280,508	+		IAI47_06295	0.87	-0.7
1,280,508	+		IAI47_06295	0.87	-0.8
1,280,508	+		IAI47_06295	0.87	-1.3
1,280,508	+		IAI47_06295	0.87	-0.0
1,280,508	+		IAI47_06295	0.87	-0.6
1,280,509	-		IAI47_06295	0.87	-0.4
1,280,509	-		IAI47_06295	0.87	+0.3
1,280,510	+		IAI47_06295	0.87	-0.7
1,280,510	+		IAI47_06295	0.87	+1.3
1,280,510	+		IAI47_06295	0.87	-0.5
1,280,510	+		IAI47_06295	0.87	+0.7
1,280,511	-		IAI47_06295	0.88	-0.9
1,280,511	-		IAI47_06295	0.88	-0.7
1,280,518	+		IAI47_06295	0.89	-1.1
1,280,519	-		IAI47_06295	0.89	-0.7
1,280,519	-		IAI47_06295	0.89	-0.3
1,280,519	-		IAI47_06295	0.89	-0.8
1,280,519	-		IAI47_06295	0.89	+0.3
1,280,519	-		IAI47_06295	0.89	+0.3
1,280,519	-		IAI47_06295	0.89	-0.6
1,280,519	-		IAI47_06295	0.89	+0.3
1,280,525	+		IAI47_06295	0.90	-1.5
1,280,526	-		IAI47_06295	0.90	-0.7
1,280,526	-		IAI47_06295	0.90	-0.6
1,280,526	-		IAI47_06295	0.90	-0.5
1,280,526	-		IAI47_06295	0.90	-1.1
1,280,526	-		IAI47_06295	0.90	-1.0
1,280,526	-		IAI47_06295	0.90	+0.9
1,280,601	+				+0.7
1,280,601	+				+0.3
1,280,602	-				-0.3
1,280,607	+				-1.3
1,280,607	+				+1.3
1,280,607	+				-0.5
1,280,607	+				+0.6
1,280,607	+				-1.0
1,280,607	+				+0.3
1,280,608	-				-1.0
1,280,608	-				-0.6
1,280,608	-				-0.9
1,280,608	-				+0.6
1,280,608	-				-0.9
1,280,608	-				+0.1
1,280,608	-				-1.5
1,280,608	-				+0.3
1,280,608	-				+0.2
1,280,619	+				-0.7
1,280,619	+				-0.0
1,280,619	+				-0.2
1,280,620	-				-0.4
1,280,625	-				-0.5
1,280,625	-				+0.3
1,280,625	-				+0.5
1,280,625	-				+1.9
1,280,643	+				+0.6
1,280,643	+				-0.7
1,280,644	-				-0.9
1,280,644	-				-2.0
1,280,644	-				+0.3
1,280,743	-		IAI47_06300	0.17	-0.3
1,280,750	+		IAI47_06300	0.18	+0.3
1,280,750	+		IAI47_06300	0.18	-0.4
1,280,750	+		IAI47_06300	0.18	-0.2
1,280,751	-		IAI47_06300	0.18	-1.0
1,280,751	-		IAI47_06300	0.18	-0.7
1,280,819	+		IAI47_06300	0.27	-0.5
1,280,819	+		IAI47_06300	0.27	-1.3
1,280,820	-		IAI47_06300	0.27	+0.1
1,280,820	-		IAI47_06300	0.27	-0.1
1,280,820	-		IAI47_06300	0.27	-0.3
1,280,820	-		IAI47_06300	0.27	-0.7
1,280,820	-		IAI47_06300	0.27	-0.7
1,280,844	+		IAI47_06300	0.30	-1.1
1,280,845	-		IAI47_06300	0.31	+1.0
1,280,845	-		IAI47_06300	0.31	-2.9
1,280,845	-		IAI47_06300	0.31	-0.0
1,280,910	+		IAI47_06300	0.39	-1.2
1,280,910	+		IAI47_06300	0.39	-0.6
1,280,911	-		IAI47_06300	0.39	-0.5
1,280,911	-		IAI47_06300	0.39	-0.5
1,280,911	-		IAI47_06300	0.39	-0.5
1,281,011	-		IAI47_06300	0.52	-0.7
1,281,019	-		IAI47_06300	0.53	+2.3
1,281,019	-		IAI47_06300	0.53	-0.3
1,281,213	+		IAI47_06300	0.78	-1.1
1,281,213	+		IAI47_06300	0.78	+0.5
1,281,214	-		IAI47_06300	0.78	+0.5
1,281,351	-				-0.6
1,281,351	-				-0.9
1,281,379	+				-0.8
1,281,379	+				-0.7
1,281,379	+				+2.9
1,281,379	+				-1.1
1,281,380	-				-1.4
1,281,420	-				-1.3
1,281,459	-				+0.0
1,281,459	-				+0.8
1,281,459	-				+0.9
1,281,552	+		IAI47_06305	0.15	-0.2
1,281,552	+		IAI47_06305	0.15	-0.2
1,281,552	+		IAI47_06305	0.15	-1.7
1,281,553	-		IAI47_06305	0.15	-1.6
1,281,570	+		IAI47_06305	0.17	-0.2
1,281,570	+		IAI47_06305	0.17	-0.6
1,281,571	-		IAI47_06305	0.17	-0.0
1,281,571	-		IAI47_06305	0.17	-0.3
1,281,576	+		IAI47_06305	0.18	+1.5
1,281,576	+		IAI47_06305	0.18	+0.2
1,281,576	+		IAI47_06305	0.18	-1.4
1,281,576	+		IAI47_06305	0.18	-1.0
1,281,577	-		IAI47_06305	0.18	+0.0
1,281,577	-		IAI47_06305	0.18	-0.8
1,281,594	+		IAI47_06305	0.20	-0.0