Strain Fitness in Pantoea sp. MT58 around IAI47_05470

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
1,155,918	-		IAI47_05465	0.14	-0.7
1,155,948	-		IAI47_05465	0.17	-1.7
1,155,948	-		IAI47_05465	0.17	-2.0
1,156,023	-		IAI47_05465	0.24	-2.0
1,156,110	-		IAI47_05465	0.33	-1.3
1,156,338	-		IAI47_05465	0.55	+1.3
1,156,371	-		IAI47_05465	0.58	-1.1
1,156,375	-		IAI47_05465	0.59	-2.3
1,156,375	-		IAI47_05465	0.59	-0.3
1,156,375	-		IAI47_05465	0.59	-1.3
1,156,375	-		IAI47_05465	0.59	+1.9
1,156,437	-		IAI47_05465	0.65	-2.0
1,156,437	-		IAI47_05465	0.65	-3.2
1,156,443	-		IAI47_05465	0.65	-1.7
1,156,491	-		IAI47_05465	0.70	-0.7
1,156,584	-		IAI47_05465	0.79	-1.0
1,156,584	-		IAI47_05465	0.79	-3.6
1,156,584	-		IAI47_05465	0.79	-0.3
1,156,584	-		IAI47_05465	0.79	-2.0
1,156,663	-		IAI47_05465	0.87	-0.5
1,156,663	-		IAI47_05465	0.87	-1.4
1,156,663	-		IAI47_05465	0.87	-1.3
1,156,672	-		IAI47_05465	0.88	-3.5
1,156,709	-				-1.3
1,156,709	-				-1.3
1,156,709	-				-0.3
1,156,783	-				+0.7
1,156,797	+				-1.3
1,156,819	+				+1.3
1,156,819	+				+0.8
1,156,876	-				-0.2
1,156,876	-				-1.3
1,156,897	+				-0.1
1,156,921	+				-0.4
1,156,922	-				+0.9
1,156,937	+				+0.7
1,156,937	+				-0.0
1,156,937	+				+2.6
1,156,937	+				-0.7
1,156,937	+				+0.6
1,156,937	+				-0.8
1,156,937	+				-0.5
1,156,938	-				-0.7
1,156,938	-				+0.4
1,156,938	-				-1.5
1,156,938	-				-0.7
1,156,938	-				-1.3
1,156,938	-				-0.8
1,156,968	+				+0.6
1,156,968	+				-0.1
1,156,968	+				+0.8
1,156,969	-				-0.3
1,156,969	-				+0.3
1,156,999	+		IAI47_05470	0.12	-0.7
1,156,999	+		IAI47_05470	0.12	+0.1
1,156,999	+		IAI47_05470	0.12	-1.3
1,156,999	+		IAI47_05470	0.12	-2.3
1,157,000	-		IAI47_05470	0.12	+0.3
1,157,002	+		IAI47_05470	0.12	-1.3
1,157,003	-		IAI47_05470	0.12	+0.3
1,157,003	-		IAI47_05470	0.12	+1.9
1,157,003	-		IAI47_05470	0.12	-0.1
1,157,003	-		IAI47_05470	0.12	-0.3
1,157,122	+		IAI47_05470	0.25	-0.3
1,157,122	+		IAI47_05470	0.25	-0.3
1,157,123	-		IAI47_05470	0.25	-0.7
1,157,137	+		IAI47_05470	0.27	+0.5
1,157,209	+		IAI47_05470	0.35	-1.3
1,157,209	+		IAI47_05470	0.35	+0.3
1,157,209	+		IAI47_05470	0.35	+1.1
1,157,209	+		IAI47_05470	0.35	+1.3
1,157,210	-		IAI47_05470	0.35	+0.5
1,157,210	-		IAI47_05470	0.35	-1.0
1,157,210	-		IAI47_05470	0.35	+0.0
1,157,210	-		IAI47_05470	0.35	-0.2
1,157,210	-		IAI47_05470	0.35	-2.5
1,157,262	+		IAI47_05470	0.40	+0.3
1,157,262	+		IAI47_05470	0.40	-0.1
1,157,262	+		IAI47_05470	0.40	-0.7
1,157,263	-		IAI47_05470	0.41	+0.8
1,157,305	+		IAI47_05470	0.45	-0.5
1,157,306	-		IAI47_05470	0.45	-0.4
1,157,362	+		IAI47_05470	0.51	+0.8
1,157,362	+		IAI47_05470	0.51	-0.5
1,157,480	+		IAI47_05470	0.64	-1.0
1,157,481	-		IAI47_05470	0.64	-0.6
1,157,586	+		IAI47_05470	0.76	-0.1
1,157,586	+		IAI47_05470	0.76	-0.3
1,157,587	-		IAI47_05470	0.76	-0.0
1,157,587	-		IAI47_05470	0.76	-0.7
1,157,587	-		IAI47_05470	0.76	+2.9
1,157,587	-		IAI47_05470	0.76	+0.8
1,157,608	+		IAI47_05470	0.78	-1.3
1,157,608	+		IAI47_05470	0.78	+0.6
1,157,608	+		IAI47_05470	0.78	-0.6
1,157,608	+		IAI47_05470	0.78	+0.2
1,157,608	+		IAI47_05470	0.78	-0.0
1,157,609	-		IAI47_05470	0.78	-0.0
1,157,609	-		IAI47_05470	0.78	+0.3
1,157,609	-		IAI47_05470	0.78	+0.7
1,157,609	-		IAI47_05470	0.78	+1.0
1,157,609	-		IAI47_05470	0.78	+2.0
1,157,609	-		IAI47_05470	0.78	-0.7
1,157,628	+		IAI47_05470	0.80	-1.0
1,157,653	+		IAI47_05470	0.83	+0.2
1,157,653	+		IAI47_05470	0.83	+0.0
1,157,653	+		IAI47_05470	0.83	+0.3
1,157,653	+		IAI47_05470	0.83	-2.3
1,157,654	-		IAI47_05470	0.83	+0.9
1,157,654	-		IAI47_05470	0.83	-1.3
1,157,654	-		IAI47_05470	0.83	-1.5
1,157,708	-		IAI47_05470	0.89	-0.2
1,157,708	-		IAI47_05470	0.89	+0.3
1,157,807	+				-1.1
1,157,808	-				-0.8
1,157,808	-				-0.3
1,157,808	-				-2.0
1,157,811	+				+0.6
1,157,811	+				-0.1
1,157,811	+				-0.5
1,157,811	+				-0.5
1,157,811	+				+1.0
1,157,812	-				-0.3
1,157,812	-				+1.3
1,157,812	-				-1.4
1,157,812	-				+1.2
1,157,813	+				+0.7
1,157,813	+				+0.3
1,157,813	+				+4.2
1,157,813	+				-0.0
1,157,813	+				-0.2
1,157,813	+				+1.0
1,157,813	+				+0.3
1,157,813	+				+0.9
1,157,813	+				+0.5
1,157,813	+				-1.0
1,157,813	+				+0.3
1,157,813	+				+0.6
1,157,814	-				-0.1
1,157,814	-				-1.3
1,157,814	-				-0.3
1,157,814	-				+1.3
1,157,814	-				+1.0
1,157,814	-				-0.2
1,157,814	-				+0.1
1,157,814	-				-0.4
1,157,814	-				+1.3
1,157,814	-				+0.9
1,157,814	-				-0.1
1,157,814	-				+0.1
1,157,814	-				+1.3
1,157,814	-				+0.3
1,157,826	+				-0.0
1,157,827	-				-0.7
1,157,827	-				+0.0
1,157,827	-				-0.5
1,157,827	-				-0.3
1,157,827	-				-0.5
1,157,966	+		IAI47_05475	0.47	-0.7
1,157,966	+		IAI47_05475	0.47	+0.3
1,157,967	-		IAI47_05475	0.47	+0.3
1,157,967	-		IAI47_05475	0.47	-0.2
1,157,967	-		IAI47_05475	0.47	-0.3
1,157,967	-		IAI47_05475	0.47	-0.1
1,157,967	-		IAI47_05475	0.47	-0.4
1,157,967	-		IAI47_05475	0.47	-0.3
1,157,967	-		IAI47_05475	0.47	-0.5
1,157,967	-		IAI47_05475	0.47	-0.9
1,157,967	-		IAI47_05475	0.47	+1.0
1,157,967	-		IAI47_05475	0.47	-0.7
1,157,967	-		IAI47_05475	0.47	-1.4
1,157,967	-		IAI47_05475	0.47	-0.7
1,158,038	-		IAI47_05475	0.68	+0.3
1,158,057	+		IAI47_05475	0.74	+1.0
1,158,057	+		IAI47_05475	0.74	+0.0
1,158,058	-		IAI47_05475	0.74	+0.9
1,158,058	-		IAI47_05475	0.74	-0.4
1,158,058	-		IAI47_05475	0.74	-0.3
1,158,158	+				-0.5
1,158,158	+				-0.9
1,158,159	-				+3.1
1,158,159	-				+0.1
1,158,159	-				+1.0
1,158,159	-				+1.1
1,158,159	-				+1.9
1,158,170	+				+0.2
1,158,170	+				-0.5
1,158,170	+				-0.7
1,158,170	+				-0.7
1,158,170	+				-0.4
1,158,170	+				-1.0
1,158,170	+				-0.6
1,158,170	+				-0.5
1,158,170	+				-0.2
1,158,170	+				+1.2
1,158,170	+				+0.1
1,158,171	-				+0.3
1,158,171	-				-0.1
1,158,171	-				-0.4
1,158,171	-				-2.0
1,158,171	-				-0.3
1,158,171	-				+0.9
1,158,171	-				-0.4
1,158,171	-				-1.7
1,158,171	-				+0.6
1,158,171	-				-1.0
1,158,171	-				+0.7
1,158,171	-				+0.9
1,158,171	-				-1.7
1,158,171	-				+0.3
1,158,176	-				-0.5
1,158,214	+				-0.4
1,158,214	+				+2.3
1,158,215	-				+1.6
1,158,215	-				-1.8
1,158,215	-				+1.9
1,158,215	-				-0.7
1,158,238	+				+0.6
1,158,238	+				+0.8
1,158,239	-				-0.2
1,158,239	-				+0.1
1,158,239	-				-0.1
1,158,239	-				+1.0
1,158,239	-				-0.3
1,158,242	+				-0.1
1,158,242	+				+1.4
1,158,242	+				+2.0
1,158,242	+				+3.1
1,158,243	-				-0.6
1,158,243	-				+0.3
1,158,243	-				+0.1
1,158,243	-				-0.9
1,158,256	+				+0.3
1,158,257	-				-0.8
1,158,283	+				-0.2
1,158,283	+				-0.7
1,158,283	+				-0.0
1,158,284	-				+0.3
1,158,370	+				+1.3
1,158,370	+				+2.1
1,158,370	+				-1.9
1,158,371	-				+0.3
1,158,371	-				-1.5
1,158,407	+				+1.0
1,158,408	-				+2.6
1,158,408	-				-0.7
1,158,408	-				+0.3
1,158,408	-				+0.0
1,158,411	+				-2.0
1,158,411	+				+0.3
1,158,411	+				+1.6
1,158,411	+				+0.3
1,158,411	+				+0.5
1,158,411	+				+0.9
1,158,411	+				+0.1
1,158,411	+				-0.5
1,158,412	-				+0.5
1,158,412	-				-0.3
1,158,412	-				+0.3
1,158,412	-				+0.3
1,158,412	-				-0.4
1,158,412	-				+0.8
1,158,412	-				+1.1
1,158,412	-				+1.3
1,158,527	+				-0.4
1,158,527	+				-0.3
1,158,528	-				+0.1
1,158,536	+				-1.1
1,158,536	+				+0.3
1,158,536	+				+0.3
1,158,537	-				+0.6
1,158,537	-				-0.5
1,158,537	-				-0.2
1,158,537	-				+0.7
1,158,537	-				+1.0
1,158,678	+				+1.2
1,158,745	+				+0.1
1,158,745	+				+0.6