Strain Fitness in Pantoea sp. MT58 around IAI47_05105

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
1,078,131	+		IAI47_05100	0.44	-0.2
1,078,132	-		IAI47_05100	0.45	+0.4
1,078,141	+		IAI47_05100	0.45	+1.8
1,078,162	+		IAI47_05100	0.47	+1.9
1,078,163	-		IAI47_05100	0.47	-0.3
1,078,163	-		IAI47_05100	0.47	+0.2
1,078,291	+		IAI47_05100	0.56	-0.4
1,078,291	+		IAI47_05100	0.56	+0.3
1,078,291	+		IAI47_05100	0.56	-1.4
1,078,292	-		IAI47_05100	0.56	+1.9
1,078,380	-		IAI47_05100	0.63	+1.6
1,078,423	+		IAI47_05100	0.66	+1.6
1,078,423	+		IAI47_05100	0.66	-0.7
1,078,423	+		IAI47_05100	0.66	-1.7
1,078,424	-		IAI47_05100	0.66	-0.1
1,078,462	-		IAI47_05100	0.69	+0.3
1,078,500	+		IAI47_05100	0.71	+0.3
1,078,500	+		IAI47_05100	0.71	+0.0
1,078,500	+		IAI47_05100	0.71	+1.4
1,078,500	+		IAI47_05100	0.71	-1.7
1,078,500	+		IAI47_05100	0.71	+0.7
1,078,500	+		IAI47_05100	0.71	+0.0
1,078,500	+		IAI47_05100	0.71	-1.1
1,078,500	+		IAI47_05100	0.71	+0.3
1,078,501	-		IAI47_05100	0.71	+0.3
1,078,501	-		IAI47_05100	0.71	+0.9
1,078,501	-		IAI47_05100	0.71	-1.4
1,078,501	-		IAI47_05100	0.71	-3.5
1,078,501	-		IAI47_05100	0.71	+0.3
1,078,610	+		IAI47_05100	0.79	-1.0
1,078,611	-		IAI47_05100	0.79	-0.7
1,078,611	-		IAI47_05100	0.79	+0.3
1,078,628	+		IAI47_05100	0.81	+0.0
1,078,628	+		IAI47_05100	0.81	+0.5
1,078,628	+		IAI47_05100	0.81	+0.1
1,078,628	+		IAI47_05100	0.81	-0.1
1,078,629	-		IAI47_05100	0.81	+0.2
1,078,629	-		IAI47_05100	0.81	-1.1
1,078,629	-		IAI47_05100	0.81	-0.0
1,078,629	-		IAI47_05100	0.81	-1.3
1,078,654	+		IAI47_05100	0.83	-0.3
1,078,655	-		IAI47_05100	0.83	+0.8
1,078,655	-		IAI47_05100	0.83	+0.3
1,078,751	+		IAI47_05100	0.90	-0.7
1,078,751	+		IAI47_05100	0.90	+0.1
1,078,752	-		IAI47_05100	0.90	+1.6
1,078,752	-		IAI47_05100	0.90	+0.1
1,078,752	-		IAI47_05100	0.90	+1.3
1,078,845	+				-0.1
1,078,845	+				-0.3
1,078,845	+				+0.3
1,078,845	+				-0.1
1,078,846	-				+0.5
1,078,846	-				-0.8
1,078,846	-				+0.3
1,078,863	+				+0.1
1,078,926	-				+0.9
1,078,939	+				+1.6
1,078,940	-				+1.0
1,078,940	-				+0.3
1,078,978	-				+0.3
1,079,006	+				-1.7
1,079,008	+				-0.7
1,079,008	+				-2.8
1,079,027	+				+1.5
1,079,027	+				-0.7
1,079,031	+				+0.0
1,079,031	+				+0.4
1,079,031	+				-1.3
1,079,055	+				-1.5
1,079,055	+				-0.7
1,079,190	+				-0.7
1,080,328	+		IAI47_05105	0.86	-2.3
1,080,330	+		IAI47_05105	0.86	-2.3
1,080,330	+		IAI47_05105	0.86	+0.3
1,080,495	+				+0.9
1,080,526	+				+1.3