Strain Fitness in Pantoea sp. MT58 around IAI47_04910

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
1,027,010	+		IAI47_04895	0.61	+0.5
1,027,010	+		IAI47_04895	0.61	+0.1
1,027,010	+		IAI47_04895	0.61	-1.5
1,027,010	+		IAI47_04895	0.61	+0.3
1,027,010	+		IAI47_04895	0.61	+1.9
1,027,010	+		IAI47_04895	0.61	-0.7
1,027,024	+		IAI47_04895	0.63	-2.2
1,027,034	+		IAI47_04895	0.65	-0.1
1,027,126	+		IAI47_04895	0.77	-1.1
1,027,148	+		IAI47_04895	0.80	-1.4
1,027,148	+		IAI47_04895	0.80	-1.0
1,027,227	+				+1.3
1,027,227	+				-0.7
1,027,227	+				-0.5
1,027,669	+				-1.2
1,027,670	-				-1.2
1,027,731	+		IAI47_04905	0.25	-0.7
1,027,731	+		IAI47_04905	0.25	-1.0
1,027,731	+		IAI47_04905	0.25	-0.4
1,027,731	+		IAI47_04905	0.25	+0.8
1,027,731	+		IAI47_04905	0.25	+0.1
1,027,732	-		IAI47_04905	0.26	-0.3
1,027,732	-		IAI47_04905	0.26	-0.5
1,027,732	-		IAI47_04905	0.26	-1.7
1,027,732	-		IAI47_04905	0.26	+0.9
1,027,732	-		IAI47_04905	0.26	+0.3
1,027,736	+		IAI47_04905	0.27	+0.6
1,027,737	-		IAI47_04905	0.28	+0.0
1,027,737	-		IAI47_04905	0.28	-1.8
1,027,737	-		IAI47_04905	0.28	+0.1
1,027,737	-		IAI47_04905	0.28	+0.6
1,027,783	+		IAI47_04905	0.46	-0.1
1,027,783	+		IAI47_04905	0.46	+0.8
1,027,783	+		IAI47_04905	0.46	+0.3
1,027,825	+		IAI47_04905	0.63	+2.5
1,027,825	+		IAI47_04905	0.63	+1.6
1,027,825	+		IAI47_04905	0.63	-0.7
1,027,826	-		IAI47_04905	0.63	-1.2
1,027,826	-		IAI47_04905	0.63	+1.5
1,027,826	-		IAI47_04905	0.63	+1.3
1,027,877	+		IAI47_04905	0.84	+0.6
1,027,878	-		IAI47_04905	0.84	+1.2
1,027,878	-		IAI47_04905	0.84	+0.2
1,027,878	-		IAI47_04905	0.84	+0.3
1,027,878	-		IAI47_04905	0.84	+0.1
1,027,878	-		IAI47_04905	0.84	-1.4
1,027,878	-		IAI47_04905	0.84	+0.5
1,027,886	+		IAI47_04905	0.88	+1.7
1,027,886	+		IAI47_04905	0.88	+0.5
1,027,886	+		IAI47_04905	0.88	+0.3
1,027,886	+		IAI47_04905	0.88	+1.1
1,027,886	+		IAI47_04905	0.88	+0.1
1,027,886	+		IAI47_04905	0.88	-0.0
1,027,887	-		IAI47_04905	0.88	+1.3
1,027,887	-		IAI47_04905	0.88	+0.3
1,027,887	-		IAI47_04905	0.88	+0.3
1,027,901	+				-0.4
1,027,901	+				+2.2
1,027,902	-				+0.1
1,027,902	-				+0.9
1,027,902	-				+1.5
1,027,902	-				+0.5
1,027,919	+				+0.1
1,027,920	-				+0.2
1,027,920	-				+1.0
1,027,920	-				-0.3
1,027,920	-				-1.5
1,027,951	+				+1.6
1,027,954	+				+1.3
1,027,954	+				+1.3
1,027,954	+				-0.5
1,027,954	+				+0.3
1,027,954	+				+0.8
1,027,954	+				+2.3
1,027,955	-				+0.3
1,027,955	-				-1.0
1,027,955	-				+1.0
1,027,955	-				-0.5
1,027,955	-				-1.1
1,027,955	-				-0.8
1,027,955	-				+1.3
1,027,956	+				+0.5
1,027,956	+				+0.9
1,027,956	+				+0.2
1,027,956	+				+1.7
1,027,956	+				+1.3
1,027,956	+				-0.5
1,027,956	+				+0.8
1,027,956	+				+1.9
1,027,956	+				+0.4
1,027,957	-				+1.9
1,027,957	-				-0.0
1,027,957	-				-0.9
1,027,957	-				+0.3
1,027,957	-				+0.2
1,027,957	-				+0.3
1,027,957	-				+0.2
1,027,957	-				+0.8
1,027,957	-				+0.6
1,027,957	-				-0.2
1,027,957	-				-1.0
1,027,957	-				-3.0
1,027,957	-				+0.6
1,027,957	-				+0.2
1,027,957	-				+2.7
1,027,957	-				-1.2
1,027,957	-				+1.3
1,028,010	+				+0.3
1,028,010	+				-1.4
1,028,011	-				-1.7
1,028,052	+				+3.2
1,028,052	+				+1.3
1,028,053	-				+1.3
1,028,053	-				+0.0
1,028,112	+		IAI47_04910	0.17	+1.9
1,028,133	+		IAI47_04910	0.19	+3.3
1,028,133	+		IAI47_04910	0.19	+1.9
1,028,134	-		IAI47_04910	0.19	+2.3
1,028,134	-		IAI47_04910	0.19	+1.9
1,028,134	-		IAI47_04910	0.19	+1.7
1,028,134	-		IAI47_04910	0.19	+3.1
1,028,134	-		IAI47_04910	0.19	+2.9
1,028,135	+		IAI47_04910	0.19	+1.3
1,028,135	+		IAI47_04910	0.19	+2.7
1,028,136	-		IAI47_04910	0.20	+2.3
1,028,136	-		IAI47_04910	0.20	+3.6
1,028,136	-		IAI47_04910	0.20	+3.4
1,028,136	-		IAI47_04910	0.20	+2.8
1,028,136	-		IAI47_04910	0.20	+2.2
1,028,166	+		IAI47_04910	0.23	+1.8
1,028,167	-		IAI47_04910	0.23	+1.8
1,028,167	-		IAI47_04910	0.23	+3.1
1,028,258	+		IAI47_04910	0.34	+2.7
1,028,258	+		IAI47_04910	0.34	+2.8
1,028,258	+		IAI47_04910	0.34	+2.4
1,028,258	+		IAI47_04910	0.34	+3.3
1,028,258	+		IAI47_04910	0.34	+1.8
1,028,322	+		IAI47_04910	0.42	+2.2
1,028,322	+		IAI47_04910	0.42	+1.9
1,028,323	-		IAI47_04910	0.42	+2.1
1,028,323	-		IAI47_04910	0.42	+1.7
1,028,343	+		IAI47_04910	0.44	+1.7
1,028,343	+		IAI47_04910	0.44	+0.7
1,028,343	+		IAI47_04910	0.44	+1.2
1,028,343	+		IAI47_04910	0.44	+1.1
1,028,344	-		IAI47_04910	0.44	+1.2
1,028,344	-		IAI47_04910	0.44	+2.3
1,028,344	-		IAI47_04910	0.44	+1.6
1,028,344	-		IAI47_04910	0.44	+1.4
1,028,414	-		IAI47_04910	0.53	+2.0
1,028,414	-		IAI47_04910	0.53	+2.4
1,028,443	+		IAI47_04910	0.56	+1.5
1,028,443	+		IAI47_04910	0.56	+1.9
1,028,444	-		IAI47_04910	0.56	+2.7
1,028,444	-		IAI47_04910	0.56	+3.4
1,028,444	-		IAI47_04910	0.56	+1.6
1,028,469	+		IAI47_04910	0.59	+2.4
1,028,469	+		IAI47_04910	0.59	+2.3
1,028,469	+		IAI47_04910	0.59	+2.6
1,028,470	-		IAI47_04910	0.59	+2.0
1,028,472	+		IAI47_04910	0.60	+2.2
1,028,472	+		IAI47_04910	0.60	+2.6
1,028,472	+		IAI47_04910	0.60	+2.9
1,028,472	+		IAI47_04910	0.60	+3.6
1,028,472	+		IAI47_04910	0.60	+4.2
1,028,472	+		IAI47_04910	0.60	+2.1
1,028,472	+		IAI47_04910	0.60	+1.7
1,028,472	+		IAI47_04910	0.60	+1.3
1,028,472	+		IAI47_04910	0.60	+2.1
1,028,472	+		IAI47_04910	0.60	+2.1
1,028,472	+		IAI47_04910	0.60	+3.1
1,028,473	-		IAI47_04910	0.60	+2.4
1,028,473	-		IAI47_04910	0.60	+2.9
1,028,473	-		IAI47_04910	0.60	+2.6
1,028,473	-		IAI47_04910	0.60	+2.1
1,028,473	-		IAI47_04910	0.60	+1.7
1,028,473	-		IAI47_04910	0.60	+1.3
1,028,473	-		IAI47_04910	0.60	+1.7
1,028,473	-		IAI47_04910	0.60	+3.0
1,028,473	-		IAI47_04910	0.60	+2.1
1,028,475	+		IAI47_04910	0.60	+3.3
1,028,475	+		IAI47_04910	0.60	+3.8
1,028,476	-		IAI47_04910	0.60	+1.3
1,028,476	-		IAI47_04910	0.60	+2.0
1,028,476	-		IAI47_04910	0.60	+1.7
1,028,476	-		IAI47_04910	0.60	+4.1
1,028,535	+		IAI47_04910	0.67	+2.8
1,028,535	+		IAI47_04910	0.67	+1.0
1,028,556	+		IAI47_04910	0.70	+1.7
1,028,557	-		IAI47_04910	0.70	+1.7
1,028,557	-		IAI47_04910	0.70	+1.7
1,028,557	-		IAI47_04910	0.70	+1.7
1,028,557	-		IAI47_04910	0.70	+2.2
1,028,562	+		IAI47_04910	0.70	+3.0
1,028,563	-		IAI47_04910	0.70	+2.9
1,028,613	+		IAI47_04910	0.76	+3.3
1,028,614	-		IAI47_04910	0.76	+2.7
1,028,614	-		IAI47_04910	0.76	+2.4
1,028,614	-		IAI47_04910	0.76	+2.0
1,028,631	+		IAI47_04910	0.78	+1.9
1,028,631	+		IAI47_04910	0.78	+1.9
1,028,632	-		IAI47_04910	0.79	+1.7
1,028,632	-		IAI47_04910	0.79	+2.5
1,028,632	-		IAI47_04910	0.79	+4.0
1,028,633	+		IAI47_04910	0.79	+2.2
1,028,633	+		IAI47_04910	0.79	+1.4
1,028,634	-		IAI47_04910	0.79	+2.3
1,028,634	-		IAI47_04910	0.79	+3.5
1,028,634	-		IAI47_04910	0.79	+2.6
1,028,634	-		IAI47_04910	0.79	+1.5
1,028,738	-				+2.5
1,028,780	+				+2.6
1,028,781	-				+4.2
1,028,835	+				+3.8
1,028,849	+				+2.8
1,028,849	+				+2.8
1,028,850	-				+1.0
1,028,854	+				+1.5
1,028,855	-				-0.2
1,028,870	+				-1.5
1,028,871	-				+0.5
1,028,871	-				-0.5
1,028,871	-				-0.2
1,028,871	-				+0.0
1,028,922	-				+0.3
1,028,922	-				-0.6
1,028,922	-				-0.2
1,028,922	-				-1.1
1,028,922	-				+0.3
1,028,922	-				+0.7
1,028,926	+				-0.0
1,028,926	+				+0.3
1,028,926	+				-0.1
1,028,927	-				+1.0
1,028,927	-				+0.0
1,028,927	-				-0.7
1,028,927	-				-1.2
1,028,933	+				-0.1
1,028,933	+				+0.3
1,028,933	+				+0.5
1,028,933	+				+0.3
1,028,934	-				-1.4
1,028,934	-				-0.5
1,028,934	-				+0.0
1,028,953	+				-0.4
1,028,996	-				-0.5
1,029,047	+		IAI47_04915	0.13	-1.6
1,029,047	+		IAI47_04915	0.13	+0.3
1,029,047	+		IAI47_04915	0.13	-0.8
1,029,077	+		IAI47_04915	0.17	-0.7
1,029,077	+		IAI47_04915	0.17	-0.7
1,029,078	-		IAI47_04915	0.17	-1.2
1,029,132	-		IAI47_04915	0.26	-1.4
1,029,132	-		IAI47_04915	0.26	+0.5
1,029,132	-		IAI47_04915	0.26	+2.6
1,029,179	+		IAI47_04915	0.33	-1.4
1,029,205	+		IAI47_04915	0.37	+0.6
1,029,205	+		IAI47_04915	0.37	+1.5
1,029,206	-		IAI47_04915	0.37	-0.7
1,029,206	-		IAI47_04915	0.37	+1.8
1,029,206	-		IAI47_04915	0.37	-0.3
1,029,357	+		IAI47_04915	0.61	+0.1
1,029,357	+		IAI47_04915	0.61	+0.0
1,029,357	+		IAI47_04915	0.61	-0.3
1,029,357	+		IAI47_04915	0.61	-0.6
1,029,357	+		IAI47_04915	0.61	-0.6
1,029,358	-		IAI47_04915	0.61	+0.3
1,029,358	-		IAI47_04915	0.61	+1.1
1,029,358	-		IAI47_04915	0.61	+1.1
1,029,360	+		IAI47_04915	0.62	-0.2
1,029,360	+		IAI47_04915	0.62	-0.5
1,029,361	-		IAI47_04915	0.62	-1.1
1,029,361	-		IAI47_04915	0.62	-1.0
1,029,361	-		IAI47_04915	0.62	+0.1
1,029,361	-		IAI47_04915	0.62	+0.0
1,029,488	+		IAI47_04915	0.82	+0.3
1,029,504	+		IAI47_04915	0.84	-0.0
1,029,504	+		IAI47_04915	0.84	+1.7
1,029,505	-		IAI47_04915	0.84	+1.1
1,029,513	+		IAI47_04915	0.85	-0.3
1,029,612	-				-0.2
1,029,631	+				-0.4
1,029,632	-				-0.7
1,029,632	-				-0.5
1,029,632	-				+1.4
1,029,632	-				-0.9
1,029,632	-				-1.0
1,029,633	+				+0.1
1,029,633	+				+0.1
1,029,633	+				-0.4