Strain Fitness in Pantoea sp. MT58 around IAI47_04190

Experiment: Ying_Others16 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04185 and IAI47_04190 overlap by 1 nucleotidesIAI47_04190 and IAI47_04195 are separated by 54 nucleotidesIAI47_04195 and IAI47_04200 are separated by 169 nucleotidesIAI47_04200 and IAI47_04205 are separated by 3 nucleotides IAI47_04185: IAI47_04185 - sulfate adenylyltransferase subunit CysN, at 880,261 to 881,688 _04185 IAI47_04190: IAI47_04190 - adenylyl-sulfate kinase, at 881,688 to 882,293 _04190 IAI47_04195: IAI47_04195 - DUF3561 family protein, at 882,348 to 882,668 _04195 IAI47_04200: IAI47_04200 - cell division protein FtsB, at 882,838 to 883,155 _04200 IAI47_04205: IAI47_04205 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 883,159 to 883,875 _04205 Position (kb) 881 882 883Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 880.719 kb on + strand, within IAI47_04185at 880.719 kb on + strand, within IAI47_04185at 880.720 kb on - strand, within IAI47_04185at 880.720 kb on - strand, within IAI47_04185at 880.720 kb on - strand, within IAI47_04185at 880.761 kb on + strand, within IAI47_04185at 880.761 kb on + strand, within IAI47_04185at 880.762 kb on - strand, within IAI47_04185at 880.764 kb on + strand, within IAI47_04185at 880.764 kb on + strand, within IAI47_04185at 880.764 kb on + strand, within IAI47_04185at 880.764 kb on + strand, within IAI47_04185at 880.765 kb on - strand, within IAI47_04185at 880.765 kb on - strand, within IAI47_04185at 880.765 kb on - strand, within IAI47_04185at 880.765 kb on - strand, within IAI47_04185at 880.765 kb on - strand, within IAI47_04185at 880.783 kb on + strand, within IAI47_04185at 880.784 kb on - strand, within IAI47_04185at 880.784 kb on - strand, within IAI47_04185at 880.798 kb on + strand, within IAI47_04185at 880.799 kb on - strand, within IAI47_04185at 880.799 kb on - strand, within IAI47_04185at 880.819 kb on + strand, within IAI47_04185at 880.820 kb on - strand, within IAI47_04185at 880.820 kb on - strand, within IAI47_04185at 880.820 kb on - strand, within IAI47_04185at 880.820 kb on - strand, within IAI47_04185at 880.820 kb on - strand, within IAI47_04185at 880.820 kb on - strand, within IAI47_04185at 880.927 kb on + strand, within IAI47_04185at 880.928 kb on - strand, within IAI47_04185at 880.928 kb on - strand, within IAI47_04185at 880.928 kb on - strand, within IAI47_04185at 880.928 kb on - strand, within IAI47_04185at 881.014 kb on + strand, within IAI47_04185at 881.014 kb on + strand, within IAI47_04185at 881.014 kb on + strand, within IAI47_04185at 881.014 kb on + strand, within IAI47_04185at 881.014 kb on + strand, within IAI47_04185at 881.014 kb on + strand, within IAI47_04185at 881.014 kb on + strand, within IAI47_04185at 881.014 kb on + strand, within IAI47_04185at 881.014 kb on + strand, within IAI47_04185at 881.015 kb on - strand, within IAI47_04185at 881.015 kb on - strand, within IAI47_04185at 881.015 kb on - strand, within IAI47_04185at 881.015 kb on - strand, within IAI47_04185at 881.015 kb on - strand, within IAI47_04185at 881.015 kb on - strand, within IAI47_04185at 881.015 kb on - strand, within IAI47_04185at 881.015 kb on - strand, within IAI47_04185at 881.015 kb on - strand, within IAI47_04185at 881.019 kb on + strand, within IAI47_04185at 881.020 kb on - strand, within IAI47_04185at 881.028 kb on + strand, within IAI47_04185at 881.028 kb on + strand, within IAI47_04185at 881.028 kb on + strand, within IAI47_04185at 881.047 kb on + strand, within IAI47_04185at 881.047 kb on + strand, within IAI47_04185at 881.048 kb on - strand, within IAI47_04185at 881.114 kb on + strand, within IAI47_04185at 881.115 kb on - strand, within IAI47_04185at 881.125 kb on - strand, within IAI47_04185at 881.125 kb on - strand, within IAI47_04185at 881.135 kb on + strand, within IAI47_04185at 881.135 kb on + strand, within IAI47_04185at 881.135 kb on + strand, within IAI47_04185at 881.136 kb on - strand, within IAI47_04185at 881.136 kb on - strand, within IAI47_04185at 881.136 kb on - strand, within IAI47_04185at 881.209 kb on + strand, within IAI47_04185at 881.211 kb on + strand, within IAI47_04185at 881.211 kb on + strand, within IAI47_04185at 881.211 kb on + strand, within IAI47_04185at 881.211 kb on + strand, within IAI47_04185at 881.212 kb on - strand, within IAI47_04185at 881.323 kb on + strand, within IAI47_04185at 881.323 kb on + strand, within IAI47_04185at 881.324 kb on - strand, within IAI47_04185at 881.324 kb on - strand, within IAI47_04185at 881.324 kb on - strand, within IAI47_04185at 881.324 kb on - strand, within IAI47_04185at 881.324 kb on - strand, within IAI47_04185at 881.391 kb on + strand, within IAI47_04185at 881.391 kb on + strand, within IAI47_04185at 881.391 kb on + strand, within IAI47_04185at 881.436 kb on + strand, within IAI47_04185at 881.453 kb on + strand, within IAI47_04185at 881.454 kb on - strand, within IAI47_04185at 881.485 kb on + strand, within IAI47_04185at 881.485 kb on + strand, within IAI47_04185at 881.485 kb on + strand, within IAI47_04185at 881.485 kb on + strand, within IAI47_04185at 881.486 kb on - strand, within IAI47_04185at 881.486 kb on - strand, within IAI47_04185at 881.486 kb on - strand, within IAI47_04185at 881.486 kb on - strand, within IAI47_04185at 881.486 kb on - strand, within IAI47_04185at 881.486 kb on - strand, within IAI47_04185at 881.520 kb on + strand, within IAI47_04185at 881.589 kb on + strandat 881.592 kb on + strandat 881.592 kb on + strandat 881.687 kb on - strandat 881.705 kb on + strandat 881.705 kb on + strandat 881.705 kb on + strandat 881.705 kb on + strandat 881.706 kb on - strandat 881.706 kb on - strandat 881.706 kb on - strandat 881.706 kb on - strandat 881.706 kb on - strandat 881.731 kb on + strandat 881.731 kb on + strandat 881.849 kb on + strand, within IAI47_04190at 881.850 kb on - strand, within IAI47_04190at 881.861 kb on + strand, within IAI47_04190at 881.861 kb on + strand, within IAI47_04190at 881.862 kb on - strand, within IAI47_04190at 881.862 kb on - strand, within IAI47_04190at 881.862 kb on - strand, within IAI47_04190at 881.862 kb on - strand, within IAI47_04190at 881.862 kb on - strand, within IAI47_04190at 881.865 kb on + strand, within IAI47_04190at 881.865 kb on + strand, within IAI47_04190at 881.865 kb on + strand, within IAI47_04190at 881.866 kb on - strand, within IAI47_04190at 881.866 kb on - strand, within IAI47_04190at 881.866 kb on - strand, within IAI47_04190at 882.008 kb on + strand, within IAI47_04190at 882.127 kb on + strand, within IAI47_04190at 882.127 kb on + strand, within IAI47_04190at 882.128 kb on - strand, within IAI47_04190at 882.129 kb on + strand, within IAI47_04190at 882.129 kb on + strand, within IAI47_04190at 882.129 kb on + strand, within IAI47_04190at 882.130 kb on - strand, within IAI47_04190at 882.130 kb on - strand, within IAI47_04190at 882.158 kb on + strand, within IAI47_04190at 882.159 kb on - strand, within IAI47_04190at 882.183 kb on + strand, within IAI47_04190at 882.184 kb on - strand, within IAI47_04190at 882.233 kb on + strandat 882.233 kb on + strandat 882.234 kb on - strandat 882.256 kb on + strandat 882.256 kb on + strandat 882.256 kb on + strandat 882.278 kb on + strandat 882.278 kb on + strandat 882.347 kb on + strandat 882.347 kb on + strandat 882.347 kb on + strandat 882.347 kb on + strandat 882.347 kb on + strandat 882.348 kb on - strandat 882.348 kb on - strandat 882.348 kb on - strandat 882.348 kb on - strandat 882.348 kb on - strandat 882.348 kb on - strandat 882.377 kb on + strandat 882.377 kb on + strandat 882.378 kb on - strandat 882.436 kb on + strand, within IAI47_04195at 882.436 kb on + strand, within IAI47_04195at 882.437 kb on - strand, within IAI47_04195at 882.444 kb on + strand, within IAI47_04195at 882.444 kb on + strand, within IAI47_04195at 882.445 kb on - strand, within IAI47_04195at 882.507 kb on + strand, within IAI47_04195at 882.507 kb on + strand, within IAI47_04195at 882.507 kb on + strand, within IAI47_04195at 882.507 kb on + strand, within IAI47_04195at 882.509 kb on + strand, within IAI47_04195at 882.510 kb on - strand, within IAI47_04195at 882.569 kb on + strand, within IAI47_04195at 882.569 kb on + strand, within IAI47_04195at 882.570 kb on - strand, within IAI47_04195at 882.608 kb on + strand, within IAI47_04195at 882.608 kb on + strand, within IAI47_04195at 882.608 kb on + strand, within IAI47_04195at 882.608 kb on + strand, within IAI47_04195at 882.609 kb on - strand, within IAI47_04195at 882.617 kb on + strand, within IAI47_04195at 882.617 kb on + strand, within IAI47_04195at 882.617 kb on + strand, within IAI47_04195at 882.618 kb on - strand, within IAI47_04195at 882.618 kb on - strand, within IAI47_04195at 882.618 kb on - strand, within IAI47_04195at 882.640 kb on + strandat 882.640 kb on + strandat 882.641 kb on - strandat 882.641 kb on - strandat 882.667 kb on - strandat 882.712 kb on + strandat 882.738 kb on + strandat 883.145 kb on + strandat 883.153 kb on + strandat 883.153 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
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880,719 + IAI47_04185 0.32 -3.1
880,719 + IAI47_04185 0.32 -1.2
880,720 - IAI47_04185 0.32 -1.6
880,720 - IAI47_04185 0.32 -1.6
880,720 - IAI47_04185 0.32 -2.5
880,761 + IAI47_04185 0.35 -2.5
880,761 + IAI47_04185 0.35 -3.1
880,762 - IAI47_04185 0.35 -0.6
880,764 + IAI47_04185 0.35 -1.2
880,764 + IAI47_04185 0.35 -0.6
880,764 + IAI47_04185 0.35 -2.1
880,764 + IAI47_04185 0.35 -3.0
880,765 - IAI47_04185 0.35 -3.6
880,765 - IAI47_04185 0.35 -3.2
880,765 - IAI47_04185 0.35 -2.6
880,765 - IAI47_04185 0.35 -3.6
880,765 - IAI47_04185 0.35 -2.6
880,783 + IAI47_04185 0.37 -2.0
880,784 - IAI47_04185 0.37 -1.2
880,784 - IAI47_04185 0.37 -3.1
880,798 + IAI47_04185 0.38 -2.5
880,799 - IAI47_04185 0.38 -3.0
880,799 - IAI47_04185 0.38 -0.6
880,819 + IAI47_04185 0.39 -0.4
880,820 - IAI47_04185 0.39 -3.0
880,820 - IAI47_04185 0.39 -2.2
880,820 - IAI47_04185 0.39 -2.0
880,820 - IAI47_04185 0.39 -1.6
880,820 - IAI47_04185 0.39 -2.2
880,820 - IAI47_04185 0.39 -0.6
880,927 + IAI47_04185 0.47 -2.4
880,928 - IAI47_04185 0.47 -1.2
880,928 - IAI47_04185 0.47 -3.3
880,928 - IAI47_04185 0.47 -1.2
880,928 - IAI47_04185 0.47 -3.2
881,014 + IAI47_04185 0.53 -0.6
881,014 + IAI47_04185 0.53 -4.5
881,014 + IAI47_04185 0.53 -2.6
881,014 + IAI47_04185 0.53 -1.5
881,014 + IAI47_04185 0.53 -3.2
881,014 + IAI47_04185 0.53 -1.2
881,014 + IAI47_04185 0.53 -2.1
881,014 + IAI47_04185 0.53 -3.1
881,014 + IAI47_04185 0.53 -2.5
881,015 - IAI47_04185 0.53 -0.6
881,015 - IAI47_04185 0.53 -1.2
881,015 - IAI47_04185 0.53 -1.1
881,015 - IAI47_04185 0.53 -4.7
881,015 - IAI47_04185 0.53 -3.6
881,015 - IAI47_04185 0.53 -4.0
881,015 - IAI47_04185 0.53 -2.5
881,015 - IAI47_04185 0.53 -1.6
881,015 - IAI47_04185 0.53 -2.2
881,019 + IAI47_04185 0.53 -2.0
881,020 - IAI47_04185 0.53 -2.8
881,028 + IAI47_04185 0.54 -2.6
881,028 + IAI47_04185 0.54 -2.5
881,028 + IAI47_04185 0.54 -3.3
881,047 + IAI47_04185 0.55 -3.2
881,047 + IAI47_04185 0.55 -2.0
881,048 - IAI47_04185 0.55 -4.0
881,114 + IAI47_04185 0.60 -2.6
881,115 - IAI47_04185 0.60 -2.0
881,125 - IAI47_04185 0.61 -3.6
881,125 - IAI47_04185 0.61 -0.6
881,135 + IAI47_04185 0.61 -1.0
881,135 + IAI47_04185 0.61 -2.0
881,135 + IAI47_04185 0.61 -1.2
881,136 - IAI47_04185 0.61 -1.2
881,136 - IAI47_04185 0.61 -2.6
881,136 - IAI47_04185 0.61 -4.4
881,209 + IAI47_04185 0.66 -3.3
881,211 + IAI47_04185 0.67 -1.6
881,211 + IAI47_04185 0.67 -3.6
881,211 + IAI47_04185 0.67 -3.6
881,211 + IAI47_04185 0.67 -3.2
881,212 - IAI47_04185 0.67 -1.6
881,323 + IAI47_04185 0.74 -4.0
881,323 + IAI47_04185 0.74 -1.6
881,324 - IAI47_04185 0.74 -3.5
881,324 - IAI47_04185 0.74 -2.8
881,324 - IAI47_04185 0.74 -2.8
881,324 - IAI47_04185 0.74 -3.0
881,324 - IAI47_04185 0.74 -2.6
881,391 + IAI47_04185 0.79 -1.6
881,391 + IAI47_04185 0.79 -3.0
881,391 + IAI47_04185 0.79 -1.2
881,436 + IAI47_04185 0.82 -2.0
881,453 + IAI47_04185 0.83 -3.1
881,454 - IAI47_04185 0.84 -1.5
881,485 + IAI47_04185 0.86 -3.3
881,485 + IAI47_04185 0.86 -3.2
881,485 + IAI47_04185 0.86 -2.2
881,485 + IAI47_04185 0.86 +0.4
881,486 - IAI47_04185 0.86 -2.8
881,486 - IAI47_04185 0.86 -1.2
881,486 - IAI47_04185 0.86 -2.2
881,486 - IAI47_04185 0.86 -1.8
881,486 - IAI47_04185 0.86 -2.6
881,486 - IAI47_04185 0.86 -1.2
881,520 + IAI47_04185 0.88 -0.6
881,589 + -2.2
881,592 + -2.6
881,592 + -1.2
881,687 - -1.6
881,705 + -2.6
881,705 + -1.2
881,705 + -2.2
881,705 + -0.6
881,706 - -3.2
881,706 - -3.8
881,706 - -1.6
881,706 - -3.2
881,706 - -2.8
881,731 + -4.2
881,731 + -2.5
881,849 + IAI47_04190 0.27 -4.2
881,850 - IAI47_04190 0.27 -3.6
881,861 + IAI47_04190 0.29 -3.6
881,861 + IAI47_04190 0.29 -3.5
881,862 - IAI47_04190 0.29 -1.0
881,862 - IAI47_04190 0.29 -1.5
881,862 - IAI47_04190 0.29 -1.6
881,862 - IAI47_04190 0.29 -2.2
881,862 - IAI47_04190 0.29 -2.2
881,865 + IAI47_04190 0.29 -1.6
881,865 + IAI47_04190 0.29 -2.8
881,865 + IAI47_04190 0.29 -2.8
881,866 - IAI47_04190 0.29 +0.4
881,866 - IAI47_04190 0.29 -3.0
881,866 - IAI47_04190 0.29 -1.6
882,008 + IAI47_04190 0.53 -2.2
882,127 + IAI47_04190 0.72 -3.1
882,127 + IAI47_04190 0.72 -2.0
882,128 - IAI47_04190 0.73 -1.2
882,129 + IAI47_04190 0.73 -1.2
882,129 + IAI47_04190 0.73 -2.6
882,129 + IAI47_04190 0.73 -1.8
882,130 - IAI47_04190 0.73 -0.6
882,130 - IAI47_04190 0.73 -3.2
882,158 + IAI47_04190 0.78 -3.6
882,159 - IAI47_04190 0.78 -1.6
882,183 + IAI47_04190 0.82 -3.2
882,184 - IAI47_04190 0.82 -2.6
882,233 + -3.6
882,233 + -4.2
882,234 - -2.6
882,256 + -4.0
882,256 + +0.4
882,256 + -2.8
882,278 + +0.9
882,278 + -0.4
882,347 + -0.5
882,347 + -1.6
882,347 + -0.8
882,347 + +0.4
882,347 + +0.2
882,348 - -1.2
882,348 - +0.8
882,348 - +0.9
882,348 - -0.6
882,348 - +1.7
882,348 - -1.2
882,377 + -0.2
882,377 + +0.4
882,378 - +0.5
882,436 + IAI47_04195 0.27 +0.5
882,436 + IAI47_04195 0.27 +0.1
882,437 - IAI47_04195 0.28 +1.4
882,444 + IAI47_04195 0.30 -0.2
882,444 + IAI47_04195 0.30 +0.7
882,445 - IAI47_04195 0.30 -0.5
882,507 + IAI47_04195 0.50 -0.6
882,507 + IAI47_04195 0.50 +0.5
882,507 + IAI47_04195 0.50 -0.6
882,507 + IAI47_04195 0.50 -0.1
882,509 + IAI47_04195 0.50 +0.7
882,510 - IAI47_04195 0.50 +0.6
882,569 + IAI47_04195 0.69 -0.2
882,569 + IAI47_04195 0.69 +2.4
882,570 - IAI47_04195 0.69 +3.2
882,608 + IAI47_04195 0.81 -0.5
882,608 + IAI47_04195 0.81 -0.2
882,608 + IAI47_04195 0.81 -0.3
882,608 + IAI47_04195 0.81 +0.7
882,609 - IAI47_04195 0.81 +0.4
882,617 + IAI47_04195 0.84 -2.6
882,617 + IAI47_04195 0.84 -0.4
882,617 + IAI47_04195 0.84 +0.7
882,618 - IAI47_04195 0.84 -0.3
882,618 - IAI47_04195 0.84 +0.4
882,618 - IAI47_04195 0.84 +0.4
882,640 + -1.6
882,640 + +1.4
882,641 - +0.3
882,641 - +0.4
882,667 - -0.7
882,712 + +1.7
882,738 + +1.4
883,145 + +0.7
883,153 + -1.3
883,153 + -0.4

Or see this region's nucleotide sequence