Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04150 and IAI47_04155 overlap by 1 nucleotides IAI47_04155 and IAI47_04160 overlap by 4 nucleotides IAI47_04160 and IAI47_04165 are separated by 60 nucleotides
IAI47_04150: IAI47_04150 - NADPH-dependent assimilatory sulfite reductase flavoprotein subunit, at 871,926 to 873,731
_04150
IAI47_04155: IAI47_04155 - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 873,731 to 875,452
_04155
IAI47_04160: IAI47_04160 - phosphoadenylyl-sulfate reductase, at 875,449 to 876,183
_04160
IAI47_04165: IAI47_04165 - hypothetical protein, at 876,244 to 876,528
_04165
Position (kb) 873
874
875
876 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 872.837 kb on - strand, within IAI47_04150 at 872.837 kb on - strand, within IAI47_04150 at 872.837 kb on - strand, within IAI47_04150 at 872.903 kb on + strand, within IAI47_04150 at 872.904 kb on - strand, within IAI47_04150 at 872.925 kb on + strand, within IAI47_04150 at 872.926 kb on - strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.973 kb on - strand, within IAI47_04150 at 872.992 kb on - strand, within IAI47_04150 at 872.992 kb on - strand, within IAI47_04150 at 873.003 kb on + strand, within IAI47_04150 at 873.017 kb on + strand, within IAI47_04150 at 873.017 kb on + strand, within IAI47_04150 at 873.018 kb on - strand, within IAI47_04150 at 873.018 kb on - strand, within IAI47_04150 at 873.018 kb on - strand, within IAI47_04150 at 873.093 kb on + strand, within IAI47_04150 at 873.093 kb on + strand, within IAI47_04150 at 873.093 kb on + strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.098 kb on + strand, within IAI47_04150 at 873.099 kb on - strand, within IAI47_04150 at 873.099 kb on - strand, within IAI47_04150 at 873.099 kb on - strand, within IAI47_04150 at 873.099 kb on - strand, within IAI47_04150 at 873.133 kb on + strand, within IAI47_04150 at 873.133 kb on + strand, within IAI47_04150 at 873.133 kb on + strand, within IAI47_04150 at 873.134 kb on - strand, within IAI47_04150 at 873.134 kb on - strand, within IAI47_04150 at 873.145 kb on + strand, within IAI47_04150 at 873.145 kb on + strand, within IAI47_04150 at 873.146 kb on - strand, within IAI47_04150 at 873.146 kb on - strand, within IAI47_04150 at 873.164 kb on + strand, within IAI47_04150 at 873.165 kb on - strand, within IAI47_04150 at 873.165 kb on - strand, within IAI47_04150 at 873.165 kb on - strand, within IAI47_04150 at 873.341 kb on + strand, within IAI47_04150 at 873.341 kb on + strand, within IAI47_04150 at 873.342 kb on - strand, within IAI47_04150 at 873.342 kb on - strand, within IAI47_04150 at 873.374 kb on + strand, within IAI47_04150 at 873.374 kb on + strand, within IAI47_04150 at 873.375 kb on - strand, within IAI47_04150 at 873.385 kb on + strand, within IAI47_04150 at 873.385 kb on + strand, within IAI47_04150 at 873.395 kb on + strand, within IAI47_04150 at 873.424 kb on - strand, within IAI47_04150 at 873.424 kb on - strand, within IAI47_04150 at 873.444 kb on + strand, within IAI47_04150 at 873.445 kb on - strand, within IAI47_04150 at 873.445 kb on - strand, within IAI47_04150 at 873.445 kb on - strand, within IAI47_04150 at 873.470 kb on + strand, within IAI47_04150 at 873.471 kb on - strand, within IAI47_04150 at 873.510 kb on + strand, within IAI47_04150 at 873.510 kb on + strand, within IAI47_04150 at 873.511 kb on - strand, within IAI47_04150 at 873.514 kb on + strand, within IAI47_04150 at 873.515 kb on - strand, within IAI47_04150 at 873.515 kb on - strand, within IAI47_04150 at 873.521 kb on + strand, within IAI47_04150 at 873.521 kb on + strand, within IAI47_04150 at 873.522 kb on - strand, within IAI47_04150 at 873.522 kb on - strand, within IAI47_04150 at 873.522 kb on - strand, within IAI47_04150 at 873.522 kb on - strand, within IAI47_04150 at 873.579 kb on + strand at 873.579 kb on + strand at 873.579 kb on + strand at 873.579 kb on + strand at 873.579 kb on + strand at 873.579 kb on + strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.602 kb on + strand at 873.603 kb on - strand at 873.603 kb on - strand at 873.603 kb on - strand at 873.686 kb on - strand at 873.686 kb on - strand at 873.726 kb on + strand at 873.726 kb on + strand at 873.727 kb on - strand at 873.727 kb on - strand at 873.727 kb on - strand at 873.727 kb on - strand at 873.730 kb on - strand at 873.730 kb on - strand at 873.739 kb on + strand at 873.774 kb on + strand at 873.809 kb on + strand at 873.809 kb on + strand at 873.809 kb on + strand at 873.809 kb on + strand at 873.809 kb on + strand at 873.810 kb on - strand at 873.810 kb on - strand at 873.810 kb on - strand at 873.810 kb on - strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.903 kb on - strand at 873.903 kb on - strand at 873.903 kb on - strand at 873.903 kb on - strand at 874.003 kb on + strand, within IAI47_04155 at 874.003 kb on + strand, within IAI47_04155 at 874.003 kb on + strand, within IAI47_04155 at 874.004 kb on - strand, within IAI47_04155 at 874.004 kb on - strand, within IAI47_04155 at 874.046 kb on - strand, within IAI47_04155 at 874.055 kb on + strand, within IAI47_04155 at 874.056 kb on - strand, within IAI47_04155 at 874.182 kb on + strand, within IAI47_04155 at 874.183 kb on - strand, within IAI47_04155 at 874.183 kb on - strand, within IAI47_04155 at 874.183 kb on - strand, within IAI47_04155 at 874.201 kb on + strand, within IAI47_04155 at 874.241 kb on + strand, within IAI47_04155 at 874.241 kb on + strand, within IAI47_04155 at 874.241 kb on + strand, within IAI47_04155 at 874.242 kb on - strand, within IAI47_04155 at 874.242 kb on - strand, within IAI47_04155 at 874.242 kb on - strand, within IAI47_04155 at 874.292 kb on + strand, within IAI47_04155 at 874.292 kb on + strand, within IAI47_04155 at 874.292 kb on + strand, within IAI47_04155 at 874.293 kb on - strand, within IAI47_04155 at 874.361 kb on + strand, within IAI47_04155 at 874.361 kb on + strand, within IAI47_04155 at 874.361 kb on + strand, within IAI47_04155 at 874.361 kb on + strand, within IAI47_04155 at 874.362 kb on - strand, within IAI47_04155 at 874.362 kb on - strand, within IAI47_04155 at 874.362 kb on - strand, within IAI47_04155 at 874.517 kb on - strand, within IAI47_04155 at 874.529 kb on + strand, within IAI47_04155 at 874.530 kb on - strand, within IAI47_04155 at 874.556 kb on + strand, within IAI47_04155 at 874.628 kb on - strand, within IAI47_04155 at 874.628 kb on - strand, within IAI47_04155 at 874.655 kb on + strand, within IAI47_04155 at 874.655 kb on + strand, within IAI47_04155 at 874.655 kb on + strand, within IAI47_04155 at 874.655 kb on + strand, within IAI47_04155 at 874.656 kb on - strand, within IAI47_04155 at 874.656 kb on - strand, within IAI47_04155 at 874.656 kb on - strand, within IAI47_04155 at 874.687 kb on + strand, within IAI47_04155 at 874.687 kb on + strand, within IAI47_04155 at 874.687 kb on + strand, within IAI47_04155 at 874.739 kb on + strand, within IAI47_04155 at 874.740 kb on - strand, within IAI47_04155 at 874.765 kb on + strand, within IAI47_04155 at 874.765 kb on + strand, within IAI47_04155 at 874.765 kb on + strand, within IAI47_04155 at 874.766 kb on - strand, within IAI47_04155 at 874.766 kb on - strand, within IAI47_04155 at 874.766 kb on - strand, within IAI47_04155 at 875.003 kb on - strand, within IAI47_04155 at 875.103 kb on + strand, within IAI47_04155 at 875.103 kb on + strand, within IAI47_04155 at 875.103 kb on + strand, within IAI47_04155 at 875.104 kb on - strand, within IAI47_04155 at 875.104 kb on - strand, within IAI47_04155 at 875.104 kb on - strand, within IAI47_04155 at 875.145 kb on + strand, within IAI47_04155 at 875.145 kb on + strand, within IAI47_04155 at 875.145 kb on + strand, within IAI47_04155 at 875.145 kb on + strand, within IAI47_04155 at 875.145 kb on + strand, within IAI47_04155 at 875.145 kb on + strand, within IAI47_04155 at 875.145 kb on + strand, within IAI47_04155 at 875.145 kb on + strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.151 kb on + strand, within IAI47_04155 at 875.151 kb on + strand, within IAI47_04155 at 875.158 kb on + strand, within IAI47_04155 at 875.231 kb on + strand, within IAI47_04155 at 875.232 kb on - strand, within IAI47_04155 at 875.269 kb on + strand, within IAI47_04155 at 875.269 kb on + strand, within IAI47_04155 at 875.270 kb on - strand, within IAI47_04155 at 875.278 kb on + strand, within IAI47_04155 at 875.278 kb on + strand, within IAI47_04155 at 875.279 kb on - strand, within IAI47_04155 at 875.282 kb on + strand at 875.282 kb on + strand at 875.282 kb on + strand at 875.283 kb on - strand at 875.283 kb on - strand at 875.590 kb on + strand, within IAI47_04160 at 875.590 kb on + strand, within IAI47_04160 at 875.591 kb on - strand, within IAI47_04160 at 875.591 kb on - strand, within IAI47_04160 at 875.591 kb on - strand, within IAI47_04160 at 875.591 kb on - strand, within IAI47_04160 at 875.707 kb on + strand, within IAI47_04160 at 875.707 kb on + strand, within IAI47_04160 at 875.707 kb on + strand, within IAI47_04160 at 875.707 kb on + strand, within IAI47_04160 at 875.707 kb on + strand, within IAI47_04160 at 875.708 kb on - strand, within IAI47_04160 at 875.708 kb on - strand, within IAI47_04160 at 875.708 kb on - strand, within IAI47_04160 at 875.715 kb on + strand, within IAI47_04160 at 875.715 kb on + strand, within IAI47_04160 at 875.716 kb on - strand, within IAI47_04160 at 875.716 kb on - strand, within IAI47_04160 at 875.716 kb on - strand, within IAI47_04160 at 875.839 kb on + strand, within IAI47_04160 at 875.839 kb on + strand, within IAI47_04160 at 875.839 kb on + strand, within IAI47_04160 at 875.839 kb on + strand, within IAI47_04160 at 875.839 kb on + strand, within IAI47_04160 at 875.839 kb on + strand, within IAI47_04160 at 875.839 kb on + strand, within IAI47_04160 at 875.840 kb on + strand, within IAI47_04160 at 875.840 kb on - strand, within IAI47_04160 at 875.840 kb on - strand, within IAI47_04160 at 875.842 kb on - strand, within IAI47_04160 at 875.842 kb on - strand, within IAI47_04160 at 875.850 kb on + strand, within IAI47_04160 at 875.963 kb on + strand, within IAI47_04160 at 875.963 kb on + strand, within IAI47_04160 at 875.964 kb on - strand, within IAI47_04160 at 875.964 kb on - strand, within IAI47_04160 at 875.980 kb on - strand, within IAI47_04160 at 875.980 kb on - strand, within IAI47_04160 at 875.980 kb on - strand, within IAI47_04160 at 876.007 kb on - strand, within IAI47_04160 at 876.026 kb on - strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.049 kb on + strand, within IAI47_04160 at 876.049 kb on + strand, within IAI47_04160 at 876.049 kb on + strand, within IAI47_04160 at 876.050 kb on - strand, within IAI47_04160 at 876.050 kb on - strand, within IAI47_04160 at 876.050 kb on - strand, within IAI47_04160 at 876.073 kb on + strand, within IAI47_04160 at 876.074 kb on - strand, within IAI47_04160 at 876.182 kb on - strand at 876.182 kb on - strand at 876.182 kb on - strand at 876.182 kb on - strand at 876.182 kb on - strand at 876.216 kb on - strand at 876.245 kb on + strand at 876.245 kb on + strand at 876.256 kb on + strand at 876.257 kb on - strand at 876.308 kb on + strand, within IAI47_04165 at 876.308 kb on + strand, within IAI47_04165 at 876.308 kb on + strand, within IAI47_04165 at 876.308 kb on + strand, within IAI47_04165 at 876.308 kb on + strand, within IAI47_04165 at 876.308 kb on + strand, within IAI47_04165 at 876.309 kb on - strand, within IAI47_04165 at 876.309 kb on - strand, within IAI47_04165 at 876.309 kb on - strand, within IAI47_04165 at 876.309 kb on - strand, within IAI47_04165 at 876.408 kb on + strand, within IAI47_04165 at 876.408 kb on + strand, within IAI47_04165 at 876.408 kb on + strand, within IAI47_04165 at 876.408 kb on + strand, within IAI47_04165 at 876.409 kb on - strand, within IAI47_04165 at 876.409 kb on - strand, within IAI47_04165 at 876.409 kb on - strand, within IAI47_04165 at 876.424 kb on - strand, within IAI47_04165 at 876.424 kb on - strand, within IAI47_04165 at 876.443 kb on + strand, within IAI47_04165
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 872,837 - IAI47_04150 0.50 -2.0 872,837 - IAI47_04150 0.50 -4.3 872,837 - IAI47_04150 0.50 -2.6 872,903 + IAI47_04150 0.54 -2.8 872,904 - IAI47_04150 0.54 -2.0 872,925 + IAI47_04150 0.55 +0.4 872,926 - IAI47_04150 0.55 -3.0 872,972 + IAI47_04150 0.58 -2.2 872,972 + IAI47_04150 0.58 -1.6 872,972 + IAI47_04150 0.58 -2.0 872,972 + IAI47_04150 0.58 -1.0 872,972 + IAI47_04150 0.58 -1.6 872,973 - IAI47_04150 0.58 -3.1 872,992 - IAI47_04150 0.59 -4.4 872,992 - IAI47_04150 0.59 -2.4 873,003 + IAI47_04150 0.60 -0.6 873,017 + IAI47_04150 0.60 -2.8 873,017 + IAI47_04150 0.60 -4.6 873,018 - IAI47_04150 0.60 -1.6 873,018 - IAI47_04150 0.60 -2.6 873,018 - IAI47_04150 0.60 -2.8 873,093 + IAI47_04150 0.65 -2.4 873,093 + IAI47_04150 0.65 -2.2 873,093 + IAI47_04150 0.65 -3.3 873,094 - IAI47_04150 0.65 +0.4 873,094 - IAI47_04150 0.65 -2.0 873,094 - IAI47_04150 0.65 -0.6 873,094 - IAI47_04150 0.65 -2.6 873,094 - IAI47_04150 0.65 -3.5 873,098 + IAI47_04150 0.65 -4.4 873,099 - IAI47_04150 0.65 -3.0 873,099 - IAI47_04150 0.65 -3.1 873,099 - IAI47_04150 0.65 -2.2 873,099 - IAI47_04150 0.65 -0.6 873,133 + IAI47_04150 0.67 -1.6 873,133 + IAI47_04150 0.67 -3.0 873,133 + IAI47_04150 0.67 -0.2 873,134 - IAI47_04150 0.67 -2.8 873,134 - IAI47_04150 0.67 -2.4 873,145 + IAI47_04150 0.67 -3.3 873,145 + IAI47_04150 0.67 -3.8 873,146 - IAI47_04150 0.68 -2.4 873,146 - IAI47_04150 0.68 -1.6 873,164 + IAI47_04150 0.69 -2.6 873,165 - IAI47_04150 0.69 -1.6 873,165 - IAI47_04150 0.69 -2.0 873,165 - IAI47_04150 0.69 +0.4 873,341 + IAI47_04150 0.78 -3.3 873,341 + IAI47_04150 0.78 -1.1 873,342 - IAI47_04150 0.78 -4.1 873,342 - IAI47_04150 0.78 -0.6 873,374 + IAI47_04150 0.80 -0.6 873,374 + IAI47_04150 0.80 -2.2 873,375 - IAI47_04150 0.80 -2.8 873,385 + IAI47_04150 0.81 -2.0 873,385 + IAI47_04150 0.81 -1.2 873,395 + IAI47_04150 0.81 -3.6 873,424 - IAI47_04150 0.83 -1.2 873,424 - IAI47_04150 0.83 -1.2 873,444 + IAI47_04150 0.84 -2.4 873,445 - IAI47_04150 0.84 -3.3 873,445 - IAI47_04150 0.84 -1.2 873,445 - IAI47_04150 0.84 -3.3 873,470 + IAI47_04150 0.85 -1.2 873,471 - IAI47_04150 0.86 -3.3 873,510 + IAI47_04150 0.88 -3.5 873,510 + IAI47_04150 0.88 -3.9 873,511 - IAI47_04150 0.88 -4.2 873,514 + IAI47_04150 0.88 -2.0 873,515 - IAI47_04150 0.88 -2.2 873,515 - IAI47_04150 0.88 -3.1 873,521 + IAI47_04150 0.88 -3.8 873,521 + IAI47_04150 0.88 -2.2 873,522 - IAI47_04150 0.88 -3.0 873,522 - IAI47_04150 0.88 -4.0 873,522 - IAI47_04150 0.88 -2.0 873,522 - IAI47_04150 0.88 +0.4 873,579 + -2.9 873,579 + -3.7 873,579 + -3.4 873,579 + +0.4 873,579 + -3.0 873,579 + -1.4 873,580 - -3.2 873,580 - -4.3 873,580 - -2.8 873,580 - -2.2 873,580 - -3.5 873,580 - +1.4 873,580 - -2.6 873,580 - -2.6 873,580 - -2.6 873,580 - -2.2 873,580 - -1.2 873,580 - -2.8 873,580 - -1.2 873,580 - -2.0 873,580 - -2.0 873,580 - -3.4 873,602 + -3.1 873,603 - -2.8 873,603 - -1.6 873,603 - -1.2 873,686 - -3.1 873,686 - -0.6 873,726 + -2.1 873,726 + -2.0 873,727 - -3.2 873,727 - +0.4 873,727 - -3.9 873,727 - -1.2 873,730 - -1.6 873,730 - -2.2 873,739 + -3.2 873,774 + -3.1 873,809 + -2.6 873,809 + -4.1 873,809 + -4.6 873,809 + -3.7 873,809 + -2.6 873,810 - -0.6 873,810 - -4.1 873,810 - -3.9 873,810 - -2.0 873,902 + -5.0 873,902 + -2.4 873,902 + -3.0 873,902 + -2.1 873,902 + -1.2 873,902 + -2.5 873,902 + -2.2 873,903 - -2.4 873,903 - -2.8 873,903 - -2.4 873,903 - -2.8 874,003 + IAI47_04155 0.16 -1.2 874,003 + IAI47_04155 0.16 -3.5 874,003 + IAI47_04155 0.16 -3.3 874,004 - IAI47_04155 0.16 -2.8 874,004 - IAI47_04155 0.16 -2.6 874,046 - IAI47_04155 0.18 -1.6 874,055 + IAI47_04155 0.19 -3.0 874,056 - IAI47_04155 0.19 -3.6 874,182 + IAI47_04155 0.26 -3.0 874,183 - IAI47_04155 0.26 -2.4 874,183 - IAI47_04155 0.26 -0.6 874,183 - IAI47_04155 0.26 -2.6 874,201 + IAI47_04155 0.27 -3.4 874,241 + IAI47_04155 0.30 -2.5 874,241 + IAI47_04155 0.30 -1.2 874,241 + IAI47_04155 0.30 -1.2 874,242 - IAI47_04155 0.30 -2.2 874,242 - IAI47_04155 0.30 -4.0 874,242 - IAI47_04155 0.30 -2.8 874,292 + IAI47_04155 0.33 -2.2 874,292 + IAI47_04155 0.33 -2.2 874,292 + IAI47_04155 0.33 -3.1 874,293 - 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Or see this region's nucleotide sequence