Strain Fitness in Pantoea sp. MT58 around IAI47_04130

Experiment: Ying_Others16 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04125 and IAI47_04130 are separated by 230 nucleotidesIAI47_04130 and IAI47_04135 are separated by 76 nucleotides IAI47_04125: IAI47_04125 - nucleoside triphosphate pyrophosphohydrolase, at 866,324 to 867,112 _04125 IAI47_04130: IAI47_04130 - CTP synthase (glutamine hydrolyzing), at 867,343 to 868,980 _04130 IAI47_04135: IAI47_04135 - phosphopyruvate hydratase, at 869,057 to 870,352 _04135 Position (kb) 867 868 869Strain fitness (log2 ratio) -2 -1 0 1 2 3at 866.352 kb on + strandat 866.353 kb on - strandat 866.416 kb on + strand, within IAI47_04125at 866.416 kb on + strand, within IAI47_04125at 866.426 kb on + strand, within IAI47_04125at 866.426 kb on + strand, within IAI47_04125at 866.426 kb on + strand, within IAI47_04125at 866.426 kb on + strand, within IAI47_04125at 866.426 kb on + strand, within IAI47_04125at 866.426 kb on + strand, within IAI47_04125at 866.427 kb on - strand, within IAI47_04125at 866.427 kb on - strand, within IAI47_04125at 866.428 kb on + strand, within IAI47_04125at 866.429 kb on - strand, within IAI47_04125at 866.444 kb on + strand, within IAI47_04125at 866.444 kb on + strand, within IAI47_04125at 866.444 kb on + strand, within IAI47_04125at 866.444 kb on + strand, within IAI47_04125at 866.445 kb on - strand, within IAI47_04125at 866.445 kb on - strand, within IAI47_04125at 866.520 kb on + strand, within IAI47_04125at 866.520 kb on + strand, within IAI47_04125at 866.520 kb on + strand, within IAI47_04125at 866.521 kb on - strand, within IAI47_04125at 866.521 kb on - strand, within IAI47_04125at 866.521 kb on - strand, within IAI47_04125at 866.521 kb on - strand, within IAI47_04125at 866.521 kb on - strand, within IAI47_04125at 866.528 kb on + strand, within IAI47_04125at 866.528 kb on + strand, within IAI47_04125at 866.528 kb on + strand, within IAI47_04125at 866.528 kb on + strand, within IAI47_04125at 866.529 kb on - strand, within IAI47_04125at 866.529 kb on - strand, within IAI47_04125at 866.529 kb on - strand, within IAI47_04125at 866.529 kb on - strand, within IAI47_04125at 866.529 kb on - strand, within IAI47_04125at 866.529 kb on - strand, within IAI47_04125at 866.572 kb on + strand, within IAI47_04125at 866.572 kb on + strand, within IAI47_04125at 866.573 kb on - strand, within IAI47_04125at 866.573 kb on - strand, within IAI47_04125at 866.573 kb on - strand, within IAI47_04125at 866.573 kb on - strand, within IAI47_04125at 866.573 kb on - strand, within IAI47_04125at 866.584 kb on + strand, within IAI47_04125at 866.584 kb on + strand, within IAI47_04125at 866.584 kb on + strand, within IAI47_04125at 866.585 kb on - strand, within IAI47_04125at 866.585 kb on - strand, within IAI47_04125at 866.617 kb on + strand, within IAI47_04125at 866.677 kb on + strand, within IAI47_04125at 867.022 kb on + strand, within IAI47_04125at 867.023 kb on - strand, within IAI47_04125at 867.023 kb on - strand, within IAI47_04125at 867.114 kb on + strandat 867.115 kb on - strandat 867.213 kb on + strandat 867.213 kb on + strandat 867.213 kb on + strandat 867.213 kb on + strandat 867.214 kb on - strandat 867.214 kb on - strandat 867.214 kb on - strandat 867.214 kb on - strandat 867.214 kb on - strandat 867.218 kb on + strandat 867.218 kb on + strandat 867.219 kb on - strandat 867.219 kb on - strandat 867.219 kb on - strandat 867.219 kb on - strandat 867.219 kb on - strandat 868.970 kb on + strandat 868.978 kb on + strandat 868.978 kb on + strandat 868.978 kb on + strandat 869.023 kb on + strandat 869.023 kb on + strandat 869.023 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
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866,352 + -0.3
866,353 - -0.3
866,416 + IAI47_04125 0.12 +0.4
866,416 + IAI47_04125 0.12 -0.8
866,426 + IAI47_04125 0.13 -0.6
866,426 + IAI47_04125 0.13 -2.0
866,426 + IAI47_04125 0.13 -0.9
866,426 + IAI47_04125 0.13 +0.2
866,426 + IAI47_04125 0.13 +0.4
866,426 + IAI47_04125 0.13 -0.5
866,427 - IAI47_04125 0.13 +0.6
866,427 - IAI47_04125 0.13 -0.2
866,428 + IAI47_04125 0.13 -1.3
866,429 - IAI47_04125 0.13 -0.3
866,444 + IAI47_04125 0.15 -0.0
866,444 + IAI47_04125 0.15 -0.5
866,444 + IAI47_04125 0.15 -0.6
866,444 + IAI47_04125 0.15 -0.9
866,445 - IAI47_04125 0.15 +1.7
866,445 - IAI47_04125 0.15 +0.4
866,520 + IAI47_04125 0.25 +1.2
866,520 + IAI47_04125 0.25 +1.4
866,520 + IAI47_04125 0.25 +0.4
866,521 - IAI47_04125 0.25 +0.4
866,521 - IAI47_04125 0.25 +1.4
866,521 - IAI47_04125 0.25 +0.9
866,521 - IAI47_04125 0.25 +2.1
866,521 - IAI47_04125 0.25 +0.6
866,528 + IAI47_04125 0.26 +0.3
866,528 + IAI47_04125 0.26 +0.1
866,528 + IAI47_04125 0.26 +1.9
866,528 + IAI47_04125 0.26 -0.2
866,529 - IAI47_04125 0.26 +0.0
866,529 - IAI47_04125 0.26 +0.1
866,529 - IAI47_04125 0.26 +1.1
866,529 - IAI47_04125 0.26 -0.1
866,529 - IAI47_04125 0.26 +0.4
866,529 - IAI47_04125 0.26 +0.5
866,572 + IAI47_04125 0.31 -0.9
866,572 + IAI47_04125 0.31 +0.8
866,573 - IAI47_04125 0.32 -1.3
866,573 - IAI47_04125 0.32 +0.6
866,573 - IAI47_04125 0.32 -1.2
866,573 - IAI47_04125 0.32 +1.6
866,573 - IAI47_04125 0.32 +0.4
866,584 + IAI47_04125 0.33 -1.0
866,584 + IAI47_04125 0.33 +0.4
866,584 + IAI47_04125 0.33 +1.2
866,585 - IAI47_04125 0.33 +0.8
866,585 - IAI47_04125 0.33 -0.8
866,617 + IAI47_04125 0.37 +0.7
866,677 + IAI47_04125 0.45 +0.2
867,022 + IAI47_04125 0.88 +3.1
867,023 - IAI47_04125 0.89 -0.4
867,023 - IAI47_04125 0.89 +1.9
867,114 + +0.0
867,115 - +1.8
867,213 + +0.2
867,213 + -0.2
867,213 + -2.0
867,213 + +0.1
867,214 - -0.4
867,214 - -0.6
867,214 - -0.1
867,214 - +0.8
867,214 - -0.3
867,218 + -2.4
867,218 + +1.4
867,219 - +1.7
867,219 - +1.1
867,219 - -1.0
867,219 - -0.2
867,219 - -1.0
868,970 + -0.8
868,978 + +1.4
868,978 + -0.4
868,978 + -1.2
869,023 + -0.6
869,023 + -0.0
869,023 + -0.8

Or see this region's nucleotide sequence