Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03915 and IAI47_03920 are separated by 12 nucleotides IAI47_03920 and IAI47_03925 are separated by 142 nucleotides
IAI47_03915: IAI47_03915 - RNA pyrophosphohydrolase, at 815,711 to 816,238
_03915
IAI47_03920: IAI47_03920 - phosphoenolpyruvate--protein phosphotransferase, at 816,251 to 818,497
_03920
IAI47_03925: IAI47_03925 - prolipoprotein diacylglyceryl transferase, at 818,640 to 819,521
_03925
Position (kb) 816
817
818
819 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 815.271 kb on + strand at 815.271 kb on + strand at 815.271 kb on + strand at 815.271 kb on + strand at 815.272 kb on - strand at 815.272 kb on - strand at 815.272 kb on - strand at 815.272 kb on - strand at 815.272 kb on - strand at 815.272 kb on - strand at 815.300 kb on + strand at 815.320 kb on - strand at 815.334 kb on - strand at 815.366 kb on + strand at 815.392 kb on + strand at 815.443 kb on + strand at 815.447 kb on + strand at 815.453 kb on - strand at 815.554 kb on + strand at 815.584 kb on - strand at 815.660 kb on + strand at 815.660 kb on + strand at 815.660 kb on + strand at 815.660 kb on + strand at 816.181 kb on + strand, within IAI47_03915 at 816.181 kb on + strand, within IAI47_03915 at 816.181 kb on + strand, within IAI47_03915 at 816.181 kb on + strand, within IAI47_03915 at 816.181 kb on + strand, within IAI47_03915 at 816.181 kb on + strand, within IAI47_03915 at 816.181 kb on + strand, within IAI47_03915 at 816.181 kb on + strand, within IAI47_03915 at 816.181 kb on + strand, within IAI47_03915 at 816.182 kb on + strand, within IAI47_03915 at 816.182 kb on - strand, within IAI47_03915 at 816.182 kb on - strand, within IAI47_03915 at 816.182 kb on - strand, within IAI47_03915 at 816.182 kb on - strand, within IAI47_03915 at 816.182 kb on - strand, within IAI47_03915 at 816.209 kb on - strand at 816.226 kb on + strand at 816.227 kb on - strand at 816.227 kb on - strand at 816.227 kb on - strand at 816.250 kb on + strand at 816.250 kb on + strand at 816.250 kb on + strand at 816.250 kb on + strand at 816.250 kb on + strand at 816.250 kb on + strand at 816.250 kb on + strand at 816.250 kb on + strand at 816.251 kb on - strand at 816.251 kb on - strand at 816.251 kb on - strand at 816.251 kb on - strand at 816.371 kb on + strand at 816.371 kb on + strand at 816.372 kb on - strand at 816.398 kb on + strand at 816.398 kb on + strand at 816.399 kb on - strand at 816.399 kb on - strand at 816.401 kb on + strand at 816.401 kb on + strand at 816.401 kb on + strand at 816.402 kb on - strand at 816.402 kb on - strand at 816.447 kb on + strand at 816.448 kb on - strand at 816.448 kb on - strand at 816.469 kb on + strand at 816.480 kb on + strand, within IAI47_03920 at 816.503 kb on - strand, within IAI47_03920 at 816.506 kb on - strand, within IAI47_03920 at 816.542 kb on + strand, within IAI47_03920 at 816.542 kb on + strand, within IAI47_03920 at 816.542 kb on + strand, within IAI47_03920 at 816.542 kb on + strand, within IAI47_03920 at 816.542 kb on + strand, within IAI47_03920 at 816.542 kb on + strand, within IAI47_03920 at 816.542 kb on + strand, within IAI47_03920 at 816.542 kb on + strand, within IAI47_03920 at 816.542 kb on + strand, within IAI47_03920 at 816.543 kb on - strand, within IAI47_03920 at 816.543 kb on - strand, within IAI47_03920 at 816.543 kb on - strand, within IAI47_03920 at 816.543 kb on - strand, within IAI47_03920 at 816.543 kb on - strand, within IAI47_03920 at 816.543 kb on - strand, within IAI47_03920 at 816.543 kb on - strand, within IAI47_03920 at 816.543 kb on - strand, within IAI47_03920 at 816.543 kb on - strand, within IAI47_03920 at 816.543 kb on - strand, within IAI47_03920 at 816.543 kb on - strand, within IAI47_03920 at 816.543 kb on - strand, within IAI47_03920 at 816.543 kb on - strand, within IAI47_03920 at 816.545 kb on - strand, within IAI47_03920 at 816.545 kb on - strand, within IAI47_03920 at 816.595 kb on + strand, within IAI47_03920 at 816.595 kb on + strand, within IAI47_03920 at 816.595 kb on + strand, within IAI47_03920 at 816.595 kb on + strand, within IAI47_03920 at 816.596 kb on - strand, within IAI47_03920 at 816.691 kb on + strand, within IAI47_03920 at 816.983 kb on + strand, within IAI47_03920 at 816.983 kb on + strand, within IAI47_03920 at 816.983 kb on + strand, within IAI47_03920 at 816.983 kb on + strand, within IAI47_03920 at 816.983 kb on + strand, within IAI47_03920 at 816.984 kb on - strand, within IAI47_03920 at 816.984 kb on - strand, within IAI47_03920 at 816.984 kb on - strand, within IAI47_03920 at 817.118 kb on + strand, within IAI47_03920 at 817.118 kb on + strand, within IAI47_03920 at 817.118 kb on + strand, within IAI47_03920 at 817.118 kb on + strand, within IAI47_03920 at 817.118 kb on + strand, within IAI47_03920 at 817.118 kb on + strand, within IAI47_03920 at 817.118 kb on + strand, within IAI47_03920 at 817.119 kb on - strand, within IAI47_03920 at 817.119 kb on - strand, within IAI47_03920 at 817.119 kb on - strand, within IAI47_03920 at 817.119 kb on - strand, within IAI47_03920 at 817.119 kb on - strand, within IAI47_03920 at 817.119 kb on - strand, within IAI47_03920 at 817.119 kb on - strand, within IAI47_03920 at 817.119 kb on - strand, within IAI47_03920 at 817.150 kb on - strand, within IAI47_03920 at 817.254 kb on + strand, within IAI47_03920 at 817.254 kb on + strand, within IAI47_03920 at 817.255 kb on - strand, within IAI47_03920 at 817.255 kb on - strand, within IAI47_03920 at 817.255 kb on - strand, within IAI47_03920 at 817.255 kb on - strand, within IAI47_03920 at 817.255 kb on - strand, within IAI47_03920 at 817.287 kb on + strand, within IAI47_03920 at 817.463 kb on + strand, within IAI47_03920 at 817.464 kb on - strand, within IAI47_03920 at 817.578 kb on + strand, within IAI47_03920 at 817.579 kb on - strand, within IAI47_03920 at 817.651 kb on + strand, within IAI47_03920 at 817.651 kb on + strand, within IAI47_03920 at 817.651 kb on + strand, within IAI47_03920 at 817.651 kb on + strand, within IAI47_03920 at 817.652 kb on - strand, within IAI47_03920 at 817.652 kb on - strand, within IAI47_03920 at 817.697 kb on + strand, within IAI47_03920 at 817.705 kb on + strand, within IAI47_03920 at 817.705 kb on + strand, within IAI47_03920 at 817.705 kb on + strand, within IAI47_03920 at 817.706 kb on - strand, within IAI47_03920 at 817.706 kb on - strand, within IAI47_03920 at 817.706 kb on - strand, within IAI47_03920 at 817.706 kb on - strand, within IAI47_03920 at 817.706 kb on - strand, within IAI47_03920 at 817.706 kb on - strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.866 kb on + strand, within IAI47_03920 at 817.867 kb on - strand, within IAI47_03920 at 817.867 kb on - strand, within IAI47_03920 at 817.933 kb on + strand, within IAI47_03920 at 817.934 kb on - strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.060 kb on - strand, within IAI47_03920 at 818.060 kb on - strand, within IAI47_03920 at 818.060 kb on - strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.124 kb on - strand, within IAI47_03920 at 818.124 kb on - strand, within IAI47_03920 at 818.124 kb on - strand, within IAI47_03920 at 818.146 kb on + strand, within IAI47_03920 at 818.146 kb on + strand, within IAI47_03920 at 818.147 kb on - strand, within IAI47_03920 at 818.147 kb on - strand, within IAI47_03920 at 818.147 kb on - strand, within IAI47_03920 at 818.168 kb on + strand, within IAI47_03920 at 818.168 kb on + strand, within IAI47_03920 at 818.168 kb on + strand, within IAI47_03920 at 818.169 kb on - strand, within IAI47_03920 at 818.169 kb on - strand, within IAI47_03920 at 818.329 kb on + strand at 818.330 kb on - strand at 818.338 kb on - strand at 818.338 kb on - strand at 818.347 kb on + strand at 818.347 kb on + strand at 818.347 kb on + strand at 818.347 kb on + strand at 818.348 kb on - strand at 818.348 kb on - strand at 818.348 kb on - strand at 818.352 kb on - strand at 818.352 kb on - strand at 818.352 kb on - strand at 818.453 kb on - strand at 818.496 kb on - strand at 818.496 kb on - strand at 818.496 kb on - strand at 818.496 kb on - strand at 818.496 kb on - strand at 818.498 kb on + strand at 818.498 kb on + strand at 818.498 kb on + strand at 818.499 kb on - strand at 818.499 kb on - strand at 818.499 kb on - strand at 818.570 kb on + strand at 818.570 kb on + strand at 818.570 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 815,271 + +0.4 815,271 + -1.3 815,271 + -0.4 815,271 + +0.7 815,272 - -1.2 815,272 - -0.2 815,272 - +0.9 815,272 - -0.7 815,272 - -0.1 815,272 - +0.7 815,300 + -0.9 815,320 - -0.2 815,334 - -1.3 815,366 + +2.8 815,392 + -1.0 815,443 + +0.4 815,447 + +0.4 815,453 - +0.4 815,554 + -1.1 815,584 - -1.2 815,660 + -0.9 815,660 + -1.3 815,660 + +0.8 815,660 + -0.5 816,181 + IAI47_03915 0.89 +0.1 816,181 + IAI47_03915 0.89 -1.0 816,181 + IAI47_03915 0.89 +0.3 816,181 + IAI47_03915 0.89 +0.5 816,181 + IAI47_03915 0.89 -0.1 816,181 + IAI47_03915 0.89 +0.1 816,181 + IAI47_03915 0.89 +0.8 816,181 + IAI47_03915 0.89 -0.6 816,181 + IAI47_03915 0.89 +3.4 816,182 + IAI47_03915 0.89 +0.0 816,182 - IAI47_03915 0.89 +1.7 816,182 - IAI47_03915 0.89 +1.7 816,182 - IAI47_03915 0.89 +0.2 816,182 - IAI47_03915 0.89 +2.4 816,182 - IAI47_03915 0.89 +2.1 816,209 - +0.4 816,226 + -1.5 816,227 - +0.7 816,227 - +1.2 816,227 - +1.4 816,250 + +1.5 816,250 + +1.7 816,250 + +0.9 816,250 + +0.6 816,250 + +1.1 816,250 + +0.7 816,250 + +0.5 816,250 + +1.0 816,251 - +1.5 816,251 - +0.6 816,251 - +1.5 816,251 - +1.2 816,371 + +2.3 816,371 + +1.9 816,372 - +1.3 816,398 + +1.7 816,398 + +0.7 816,399 - -0.1 816,399 - +2.2 816,401 + +0.9 816,401 + +1.5 816,401 + +3.0 816,402 - +2.1 816,402 - +1.4 816,447 + +2.4 816,448 - +2.0 816,448 - +0.4 816,469 + +2.1 816,480 + IAI47_03920 0.10 +0.9 816,503 - IAI47_03920 0.11 +1.9 816,506 - IAI47_03920 0.11 +0.4 816,542 + IAI47_03920 0.13 +2.1 816,542 + IAI47_03920 0.13 +0.4 816,542 + IAI47_03920 0.13 +2.0 816,542 + IAI47_03920 0.13 +0.7 816,542 + IAI47_03920 0.13 +0.9 816,542 + IAI47_03920 0.13 +1.8 816,542 + IAI47_03920 0.13 +1.5 816,542 + IAI47_03920 0.13 +1.0 816,542 + IAI47_03920 0.13 +3.4 816,543 - IAI47_03920 0.13 +0.8 816,543 - IAI47_03920 0.13 +1.7 816,543 - IAI47_03920 0.13 +3.2 816,543 - IAI47_03920 0.13 +2.0 816,543 - IAI47_03920 0.13 +1.9 816,543 - IAI47_03920 0.13 +1.2 816,543 - IAI47_03920 0.13 +1.8 816,543 - IAI47_03920 0.13 +0.7 816,543 - IAI47_03920 0.13 +1.1 816,543 - IAI47_03920 0.13 +1.4 816,543 - IAI47_03920 0.13 +2.4 816,543 - IAI47_03920 0.13 +1.9 816,543 - IAI47_03920 0.13 +1.5 816,545 - IAI47_03920 0.13 +1.3 816,545 - IAI47_03920 0.13 +2.3 816,595 + IAI47_03920 0.15 +2.3 816,595 + IAI47_03920 0.15 +2.4 816,595 + IAI47_03920 0.15 +1.1 816,595 + IAI47_03920 0.15 +1.6 816,596 - IAI47_03920 0.15 +1.5 816,691 + IAI47_03920 0.20 +2.7 816,983 + IAI47_03920 0.33 +1.7 816,983 + IAI47_03920 0.33 +4.3 816,983 + IAI47_03920 0.33 +0.7 816,983 + IAI47_03920 0.33 +2.0 816,983 + IAI47_03920 0.33 +2.7 816,984 - IAI47_03920 0.33 +2.2 816,984 - IAI47_03920 0.33 +1.0 816,984 - IAI47_03920 0.33 +1.1 817,118 + IAI47_03920 0.39 +1.2 817,118 + IAI47_03920 0.39 +2.9 817,118 + IAI47_03920 0.39 +0.9 817,118 + IAI47_03920 0.39 +1.4 817,118 + IAI47_03920 0.39 +1.3 817,118 + IAI47_03920 0.39 +1.5 817,118 + IAI47_03920 0.39 +1.9 817,119 - IAI47_03920 0.39 +1.7 817,119 - IAI47_03920 0.39 +1.2 817,119 - IAI47_03920 0.39 +1.3 817,119 - IAI47_03920 0.39 +0.4 817,119 - IAI47_03920 0.39 +1.4 817,119 - IAI47_03920 0.39 +0.4 817,119 - IAI47_03920 0.39 +1.7 817,119 - IAI47_03920 0.39 +2.7 817,150 - IAI47_03920 0.40 +2.2 817,254 + IAI47_03920 0.45 +2.1 817,254 + IAI47_03920 0.45 +2.8 817,255 - IAI47_03920 0.45 +2.7 817,255 - IAI47_03920 0.45 +2.9 817,255 - IAI47_03920 0.45 +2.2 817,255 - IAI47_03920 0.45 -0.1 817,255 - IAI47_03920 0.45 +1.6 817,287 + IAI47_03920 0.46 +1.2 817,463 + IAI47_03920 0.54 +3.0 817,464 - IAI47_03920 0.54 +1.9 817,578 + IAI47_03920 0.59 +1.5 817,579 - IAI47_03920 0.59 +1.5 817,651 + IAI47_03920 0.62 +2.7 817,651 + IAI47_03920 0.62 +0.9 817,651 + IAI47_03920 0.62 +2.6 817,651 + IAI47_03920 0.62 +2.2 817,652 - IAI47_03920 0.62 +1.1 817,652 - IAI47_03920 0.62 +0.4 817,697 + IAI47_03920 0.64 +1.9 817,705 + IAI47_03920 0.65 +1.4 817,705 + IAI47_03920 0.65 +3.1 817,705 + IAI47_03920 0.65 +0.9 817,706 - IAI47_03920 0.65 +2.9 817,706 - IAI47_03920 0.65 +2.2 817,706 - IAI47_03920 0.65 +2.4 817,706 - IAI47_03920 0.65 +1.8 817,706 - IAI47_03920 0.65 +2.1 817,706 - IAI47_03920 0.65 +2.2 817,778 + IAI47_03920 0.68 +1.6 817,778 + IAI47_03920 0.68 +2.5 817,778 + IAI47_03920 0.68 +1.7 817,778 + IAI47_03920 0.68 +2.5 817,778 + IAI47_03920 0.68 +2.8 817,778 + IAI47_03920 0.68 +0.4 817,778 + IAI47_03920 0.68 +2.4 817,778 + IAI47_03920 0.68 +2.7 817,778 + IAI47_03920 0.68 +1.9 817,778 + IAI47_03920 0.68 +1.9 817,778 + IAI47_03920 0.68 +2.8 817,778 + IAI47_03920 0.68 +1.6 817,778 + IAI47_03920 0.68 +0.9 817,778 + IAI47_03920 0.68 +1.4 817,779 - IAI47_03920 0.68 +0.6 817,779 - IAI47_03920 0.68 +1.2 817,779 - IAI47_03920 0.68 +1.3 817,779 - IAI47_03920 0.68 +0.1 817,779 - IAI47_03920 0.68 +1.4 817,779 - IAI47_03920 0.68 +1.5 817,779 - IAI47_03920 0.68 +2.9 817,866 + IAI47_03920 0.72 +0.8 817,867 - IAI47_03920 0.72 +1.2 817,867 - IAI47_03920 0.72 +0.8 817,933 + IAI47_03920 0.75 +1.9 817,934 - IAI47_03920 0.75 +1.6 818,059 + IAI47_03920 0.80 +3.9 818,059 + IAI47_03920 0.80 +0.6 818,059 + IAI47_03920 0.80 +2.7 818,059 + IAI47_03920 0.80 +1.9 818,059 + IAI47_03920 0.80 +2.3 818,059 + IAI47_03920 0.80 +1.5 818,059 + IAI47_03920 0.80 +1.2 818,059 + IAI47_03920 0.80 +2.1 818,060 - IAI47_03920 0.81 +2.1 818,060 - IAI47_03920 0.81 +1.5 818,060 - IAI47_03920 0.81 +0.8 818,123 + IAI47_03920 0.83 +1.8 818,123 + IAI47_03920 0.83 +1.7 818,123 + IAI47_03920 0.83 +1.1 818,123 + IAI47_03920 0.83 +0.9 818,123 + IAI47_03920 0.83 +1.5 818,123 + IAI47_03920 0.83 +1.7 818,123 + IAI47_03920 0.83 +1.4 818,124 - IAI47_03920 0.83 +1.8 818,124 - IAI47_03920 0.83 +2.6 818,124 - IAI47_03920 0.83 +2.2 818,146 + IAI47_03920 0.84 +2.9 818,146 + IAI47_03920 0.84 +1.7 818,147 - IAI47_03920 0.84 +3.4 818,147 - IAI47_03920 0.84 +1.6 818,147 - IAI47_03920 0.84 +2.2 818,168 + IAI47_03920 0.85 +1.9 818,168 + IAI47_03920 0.85 +1.2 818,168 + IAI47_03920 0.85 +2.4 818,169 - IAI47_03920 0.85 +2.5 818,169 - IAI47_03920 0.85 +1.4 818,329 + +1.0 818,330 - +0.8 818,338 - +2.0 818,338 - +3.0 818,347 + +2.9 818,347 + +2.5 818,347 + +1.8 818,347 + +1.9 818,348 - +1.9 818,348 - +1.3 818,348 - +1.8 818,352 - +1.5 818,352 - +1.0 818,352 - +0.1 818,453 - +1.7 818,496 - +1.0 818,496 - +0.4 818,496 - +0.7 818,496 - -0.3 818,496 - +0.1 818,498 + -0.2 818,498 + +1.5 818,498 + +0.2 818,499 - -1.6 818,499 - +0.6 818,499 - +1.9 818,570 + -1.2 818,570 + +0.4 818,570 + +0.8 818,590 + -0.6 818,590 + +0.3 818,590 + +0.4 818,590 + -0.0 818,590 + +0.1 818,590 + +0.2
Or see this region's nucleotide sequence