Strain Fitness in Pantoea sp. MT58 around IAI47_03855

Experiment: Ying_Others16 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_03850 and IAI47_03855 overlap by 4 nucleotidesIAI47_03855 and IAI47_03860 are separated by 102 nucleotides IAI47_03850: IAI47_03850 - MFS transporter, at 803,596 to 804,759 _03850 IAI47_03855: IAI47_03855 - LysR family transcriptional regulator, at 804,756 to 805,676 _03855 IAI47_03860: IAI47_03860 - diaminopimelate decarboxylase, at 805,779 to 807,035 _03860 Position (kb) 804 805 806Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 803.829 kb on + strand, within IAI47_03850at 803.830 kb on - strand, within IAI47_03850at 803.830 kb on - strand, within IAI47_03850at 803.830 kb on - strand, within IAI47_03850at 803.830 kb on - strand, within IAI47_03850at 803.830 kb on - strand, within IAI47_03850at 803.830 kb on - strand, within IAI47_03850at 803.860 kb on + strand, within IAI47_03850at 803.860 kb on + strand, within IAI47_03850at 803.860 kb on + strand, within IAI47_03850at 803.861 kb on - strand, within IAI47_03850at 803.861 kb on - strand, within IAI47_03850at 803.861 kb on - strand, within IAI47_03850at 803.866 kb on + strand, within IAI47_03850at 803.866 kb on + strand, within IAI47_03850at 803.866 kb on + strand, within IAI47_03850at 803.866 kb on + strand, within IAI47_03850at 803.867 kb on - strand, within IAI47_03850at 803.867 kb on - strand, within IAI47_03850at 803.867 kb on - strand, within IAI47_03850at 803.867 kb on - strand, within IAI47_03850at 803.867 kb on - strand, within IAI47_03850at 803.867 kb on - strand, within IAI47_03850at 803.994 kb on + strand, within IAI47_03850at 803.995 kb on - strand, within IAI47_03850at 804.008 kb on + strand, within IAI47_03850at 804.008 kb on + strand, within IAI47_03850at 804.008 kb on + strand, within IAI47_03850at 804.008 kb on + strand, within IAI47_03850at 804.009 kb on - strand, within IAI47_03850at 804.009 kb on - strand, within IAI47_03850at 804.009 kb on - strand, within IAI47_03850at 804.009 kb on - strand, within IAI47_03850at 804.009 kb on - strand, within IAI47_03850at 804.009 kb on - strand, within IAI47_03850at 804.012 kb on + strand, within IAI47_03850at 804.012 kb on + strand, within IAI47_03850at 804.012 kb on + strand, within IAI47_03850at 804.012 kb on + strand, within IAI47_03850at 804.013 kb on - strand, within IAI47_03850at 804.256 kb on + strand, within IAI47_03850at 804.256 kb on + strand, within IAI47_03850at 804.256 kb on + strand, within IAI47_03850at 804.257 kb on - strand, within IAI47_03850at 804.257 kb on - strand, within IAI47_03850at 804.257 kb on - strand, within IAI47_03850at 804.269 kb on + strand, within IAI47_03850at 804.269 kb on + strand, within IAI47_03850at 804.270 kb on - strand, within IAI47_03850at 804.270 kb on - strand, within IAI47_03850at 804.275 kb on + strand, within IAI47_03850at 804.276 kb on - strand, within IAI47_03850at 804.276 kb on - strand, within IAI47_03850at 804.327 kb on - strand, within IAI47_03850at 804.327 kb on - strand, within IAI47_03850at 804.327 kb on - strand, within IAI47_03850at 804.327 kb on - strand, within IAI47_03850at 804.351 kb on + strand, within IAI47_03850at 804.528 kb on + strand, within IAI47_03850at 804.600 kb on + strand, within IAI47_03850at 804.600 kb on + strand, within IAI47_03850at 804.601 kb on - strand, within IAI47_03850at 804.714 kb on + strandat 804.715 kb on - strandat 804.715 kb on - strandat 804.715 kb on - strandat 804.723 kb on + strandat 804.724 kb on - strandat 804.757 kb on + strandat 804.758 kb on - strandat 804.875 kb on + strand, within IAI47_03855at 804.876 kb on - strand, within IAI47_03855at 804.899 kb on + strand, within IAI47_03855at 804.899 kb on + strand, within IAI47_03855at 804.899 kb on + strand, within IAI47_03855at 804.900 kb on - strand, within IAI47_03855at 804.900 kb on - strand, within IAI47_03855at 804.900 kb on - strand, within IAI47_03855at 804.900 kb on - strand, within IAI47_03855at 804.900 kb on - strand, within IAI47_03855at 804.925 kb on + strand, within IAI47_03855at 804.925 kb on + strand, within IAI47_03855at 804.926 kb on - strand, within IAI47_03855at 804.987 kb on + strand, within IAI47_03855at 805.069 kb on + strand, within IAI47_03855at 805.069 kb on + strand, within IAI47_03855at 805.069 kb on + strand, within IAI47_03855at 805.096 kb on + strand, within IAI47_03855at 805.096 kb on + strand, within IAI47_03855at 805.097 kb on - strand, within IAI47_03855at 805.233 kb on + strand, within IAI47_03855at 805.234 kb on - strand, within IAI47_03855at 805.247 kb on - strand, within IAI47_03855at 805.327 kb on - strand, within IAI47_03855at 805.327 kb on - strand, within IAI47_03855at 805.450 kb on + strand, within IAI47_03855at 805.451 kb on - strand, within IAI47_03855at 805.451 kb on - strand, within IAI47_03855at 805.451 kb on - strand, within IAI47_03855at 805.533 kb on + strand, within IAI47_03855at 805.533 kb on + strand, within IAI47_03855at 805.534 kb on - strand, within IAI47_03855at 805.534 kb on - strand, within IAI47_03855at 805.578 kb on - strand, within IAI47_03855at 805.578 kb on - strand, within IAI47_03855at 805.652 kb on + strandat 805.653 kb on - strandat 805.664 kb on + strandat 805.664 kb on + strandat 805.664 kb on + strandat 805.664 kb on + strandat 805.664 kb on + strandat 805.664 kb on + strandat 805.665 kb on - strandat 805.665 kb on - strandat 805.665 kb on - strandat 805.665 kb on - strandat 805.702 kb on + strandat 805.702 kb on + strandat 805.702 kb on + strandat 805.703 kb on - strandat 805.749 kb on + strandat 805.750 kb on - strandat 805.779 kb on - strandat 805.779 kb on - strandat 805.779 kb on - strandat 805.792 kb on + strandat 805.792 kb on + strandat 805.793 kb on - strandat 805.799 kb on + strandat 805.848 kb on + strandat 805.850 kb on + strandat 805.850 kb on + strandat 805.850 kb on + strandat 805.850 kb on + strandat 805.850 kb on + strandat 805.851 kb on - strandat 805.869 kb on + strandat 805.869 kb on + strandat 805.869 kb on + strandat 805.869 kb on + strandat 805.869 kb on + strandat 805.869 kb on + strandat 805.870 kb on - strandat 805.870 kb on - strandat 805.870 kb on - strandat 805.870 kb on - strandat 805.883 kb on + strandat 805.895 kb on + strandat 805.896 kb on - strandat 805.896 kb on - strandat 805.896 kb on - strandat 805.949 kb on + strand, within IAI47_03860at 805.949 kb on + strand, within IAI47_03860at 805.949 kb on + strand, within IAI47_03860at 805.950 kb on - strand, within IAI47_03860at 805.950 kb on - strand, within IAI47_03860at 805.952 kb on + strand, within IAI47_03860at 805.952 kb on + strand, within IAI47_03860at 805.952 kb on + strand, within IAI47_03860at 805.952 kb on + strand, within IAI47_03860at 805.952 kb on + strand, within IAI47_03860at 805.952 kb on + strand, within IAI47_03860at 805.952 kb on + strand, within IAI47_03860at 805.952 kb on + strand, within IAI47_03860at 805.953 kb on - strand, within IAI47_03860at 805.953 kb on - strand, within IAI47_03860at 805.953 kb on - strand, within IAI47_03860at 805.953 kb on - strand, within IAI47_03860at 805.953 kb on - strand, within IAI47_03860at 805.953 kb on - strand, within IAI47_03860at 805.958 kb on + strand, within IAI47_03860at 805.959 kb on - strand, within IAI47_03860at 805.959 kb on - strand, within IAI47_03860at 805.959 kb on - strand, within IAI47_03860at 805.959 kb on - strand, within IAI47_03860at 806.069 kb on + strand, within IAI47_03860at 806.116 kb on + strand, within IAI47_03860at 806.148 kb on - strand, within IAI47_03860at 806.188 kb on + strand, within IAI47_03860at 806.194 kb on + strand, within IAI47_03860at 806.240 kb on + strand, within IAI47_03860at 806.268 kb on - strand, within IAI47_03860at 806.285 kb on - strand, within IAI47_03860at 806.306 kb on + strand, within IAI47_03860at 806.306 kb on + strand, within IAI47_03860at 806.306 kb on + strand, within IAI47_03860at 806.307 kb on - strand, within IAI47_03860at 806.307 kb on - strand, within IAI47_03860at 806.313 kb on + strand, within IAI47_03860at 806.364 kb on + strand, within IAI47_03860at 806.364 kb on + strand, within IAI47_03860at 806.364 kb on + strand, within IAI47_03860at 806.365 kb on - strand, within IAI47_03860at 806.459 kb on + strand, within IAI47_03860at 806.460 kb on - strand, within IAI47_03860at 806.493 kb on - strand, within IAI47_03860at 806.502 kb on + strand, within IAI47_03860at 806.503 kb on - strand, within IAI47_03860at 806.608 kb on + strand, within IAI47_03860

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
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803,829 + IAI47_03850 0.20 -1.6
803,830 - IAI47_03850 0.20 -1.4
803,830 - IAI47_03850 0.20 -1.0
803,830 - IAI47_03850 0.20 +1.0
803,830 - IAI47_03850 0.20 +1.9
803,830 - IAI47_03850 0.20 +0.4
803,830 - IAI47_03850 0.20 -0.1
803,860 + IAI47_03850 0.23 +0.7
803,860 + IAI47_03850 0.23 -0.8
803,860 + IAI47_03850 0.23 +0.4
803,861 - IAI47_03850 0.23 +0.4
803,861 - IAI47_03850 0.23 -2.0
803,861 - IAI47_03850 0.23 -0.5
803,866 + IAI47_03850 0.23 +0.4
803,866 + IAI47_03850 0.23 +1.8
803,866 + IAI47_03850 0.23 +0.9
803,866 + IAI47_03850 0.23 +1.2
803,867 - IAI47_03850 0.23 +1.0
803,867 - IAI47_03850 0.23 +1.9
803,867 - IAI47_03850 0.23 +0.8
803,867 - IAI47_03850 0.23 -0.6
803,867 - IAI47_03850 0.23 -0.9
803,867 - IAI47_03850 0.23 -0.3
803,994 + IAI47_03850 0.34 +0.4
803,995 - IAI47_03850 0.34 +0.4
804,008 + IAI47_03850 0.35 +1.7
804,008 + IAI47_03850 0.35 -0.1
804,008 + IAI47_03850 0.35 -0.1
804,008 + IAI47_03850 0.35 +0.1
804,009 - IAI47_03850 0.35 +1.2
804,009 - IAI47_03850 0.35 +0.4
804,009 - IAI47_03850 0.35 -0.5
804,009 - IAI47_03850 0.35 +0.4
804,009 - IAI47_03850 0.35 -0.6
804,009 - IAI47_03850 0.35 -0.7
804,012 + IAI47_03850 0.36 +0.3
804,012 + IAI47_03850 0.36 -0.6
804,012 + IAI47_03850 0.36 -0.6
804,012 + IAI47_03850 0.36 -1.0
804,013 - IAI47_03850 0.36 +1.7
804,256 + IAI47_03850 0.57 -1.0
804,256 + IAI47_03850 0.57 -0.5
804,256 + IAI47_03850 0.57 -0.4
804,257 - IAI47_03850 0.57 +0.4
804,257 - IAI47_03850 0.57 +0.0
804,257 - IAI47_03850 0.57 +0.9
804,269 + IAI47_03850 0.58 +0.2
804,269 + IAI47_03850 0.58 +0.4
804,270 - IAI47_03850 0.58 +0.4
804,270 - IAI47_03850 0.58 -0.6
804,275 + IAI47_03850 0.58 +0.1
804,276 - IAI47_03850 0.58 -1.0
804,276 - IAI47_03850 0.58 -0.1
804,327 - IAI47_03850 0.63 +0.8
804,327 - IAI47_03850 0.63 +0.0
804,327 - IAI47_03850 0.63 -0.6
804,327 - IAI47_03850 0.63 +1.4
804,351 + IAI47_03850 0.65 +0.9
804,528 + IAI47_03850 0.80 -1.2
804,600 + IAI47_03850 0.86 +0.5
804,600 + IAI47_03850 0.86 -0.1
804,601 - IAI47_03850 0.86 -0.8
804,714 + +1.4
804,715 - +1.6
804,715 - +1.1
804,715 - +0.5
804,723 + +0.4
804,724 - +0.1
804,757 + -0.1
804,758 - +1.4
804,875 + IAI47_03855 0.13 -2.6
804,876 - IAI47_03855 0.13 -2.5
804,899 + IAI47_03855 0.16 -3.2
804,899 + IAI47_03855 0.16 -2.2
804,899 + IAI47_03855 0.16 -2.6
804,900 - IAI47_03855 0.16 -0.6
804,900 - IAI47_03855 0.16 -2.8
804,900 - IAI47_03855 0.16 -1.6
804,900 - IAI47_03855 0.16 -2.1
804,900 - IAI47_03855 0.16 -2.6
804,925 + IAI47_03855 0.18 -3.2
804,925 + IAI47_03855 0.18 -1.6
804,926 - IAI47_03855 0.18 -2.8
804,987 + IAI47_03855 0.25 -0.2
805,069 + IAI47_03855 0.34 -1.6
805,069 + IAI47_03855 0.34 -3.1
805,069 + IAI47_03855 0.34 -1.6
805,096 + IAI47_03855 0.37 -1.2
805,096 + IAI47_03855 0.37 -3.0
805,097 - IAI47_03855 0.37 -3.8
805,233 + IAI47_03855 0.52 -2.1
805,234 - IAI47_03855 0.52 -4.1
805,247 - IAI47_03855 0.53 -2.0
805,327 - IAI47_03855 0.62 -2.7
805,327 - IAI47_03855 0.62 -1.2
805,450 + IAI47_03855 0.75 -2.2
805,451 - IAI47_03855 0.75 -0.6
805,451 - IAI47_03855 0.75 -1.2
805,451 - IAI47_03855 0.75 -3.2
805,533 + IAI47_03855 0.84 -0.6
805,533 + IAI47_03855 0.84 +0.6
805,534 - IAI47_03855 0.84 -2.0
805,534 - IAI47_03855 0.84 +0.8
805,578 - IAI47_03855 0.89 -2.6
805,578 - IAI47_03855 0.89 -2.8
805,652 + -0.9
805,653 - -2.0
805,664 + -0.8
805,664 + +0.4
805,664 + -0.6
805,664 + -0.7
805,664 + -0.8
805,664 + +0.4
805,665 - -3.3
805,665 - -3.0
805,665 - -3.5
805,665 - -2.0
805,702 + -0.5
805,702 + -0.3
805,702 + +0.4
805,703 - +0.2
805,749 + -0.2
805,750 - +0.5
805,779 - -2.0
805,779 - -4.1
805,779 - -2.6
805,792 + -3.7
805,792 + -2.0
805,793 - -2.2
805,799 + -2.8
805,848 + -4.4
805,850 + -2.5
805,850 + -3.3
805,850 + -3.2
805,850 + -3.1
805,850 + -3.0
805,851 - -3.6
805,869 + -3.6
805,869 + +0.4
805,869 + -3.2
805,869 + -2.2
805,869 + -2.2
805,869 + -4.1
805,870 - -1.6
805,870 - -2.8
805,870 - -3.0
805,870 - -2.2
805,883 + -1.2
805,895 + -2.5
805,896 - -0.6
805,896 - -3.0
805,896 - -1.6
805,949 + IAI47_03860 0.14 -2.6
805,949 + IAI47_03860 0.14 -3.6
805,949 + IAI47_03860 0.14 -3.6
805,950 - IAI47_03860 0.14 -1.2
805,950 - IAI47_03860 0.14 +0.4
805,952 + IAI47_03860 0.14 -2.8
805,952 + IAI47_03860 0.14 -3.3
805,952 + IAI47_03860 0.14 -3.7
805,952 + IAI47_03860 0.14 -4.3
805,952 + IAI47_03860 0.14 -3.3
805,952 + IAI47_03860 0.14 -4.5
805,952 + IAI47_03860 0.14 -1.2
805,952 + IAI47_03860 0.14 -2.8
805,953 - IAI47_03860 0.14 -3.3
805,953 - IAI47_03860 0.14 -2.6
805,953 - IAI47_03860 0.14 -1.6
805,953 - IAI47_03860 0.14 -2.2
805,953 - IAI47_03860 0.14 -2.5
805,953 - IAI47_03860 0.14 -2.6
805,958 + IAI47_03860 0.14 -3.2
805,959 - IAI47_03860 0.14 -1.2
805,959 - IAI47_03860 0.14 -1.2
805,959 - IAI47_03860 0.14 -2.5
805,959 - IAI47_03860 0.14 -2.0
806,069 + IAI47_03860 0.23 -3.8
806,116 + IAI47_03860 0.27 -2.8
806,148 - IAI47_03860 0.29 -0.6
806,188 + IAI47_03860 0.33 -2.0
806,194 + IAI47_03860 0.33 -2.0
806,240 + IAI47_03860 0.37 -2.5
806,268 - IAI47_03860 0.39 -2.6
806,285 - IAI47_03860 0.40 -2.8
806,306 + IAI47_03860 0.42 -2.2
806,306 + IAI47_03860 0.42 -1.2
806,306 + IAI47_03860 0.42 -3.0
806,307 - IAI47_03860 0.42 -1.6
806,307 - IAI47_03860 0.42 -2.0
806,313 + IAI47_03860 0.42 -2.0
806,364 + IAI47_03860 0.47 -3.7
806,364 + IAI47_03860 0.47 -1.6
806,364 + IAI47_03860 0.47 -0.6
806,365 - IAI47_03860 0.47 -2.8
806,459 + IAI47_03860 0.54 -3.7
806,460 - IAI47_03860 0.54 -2.5
806,493 - IAI47_03860 0.57 -0.6
806,502 + IAI47_03860 0.58 -2.2
806,503 - IAI47_03860 0.58 -1.6
806,608 + IAI47_03860 0.66 -3.2

Or see this region's nucleotide sequence