Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03810 and IAI47_03815 are separated by 79 nucleotides IAI47_03815 and IAI47_03820 are separated by 102 nucleotides IAI47_03820 and IAI47_03825 are separated by 21 nucleotides IAI47_03825 and IAI47_03830 are separated by 3 nucleotides
IAI47_03810: IAI47_03810 - hypothetical protein, at 794,972 to 795,382
_03810
IAI47_03815: IAI47_03815 - flavodoxin FldB, at 795,462 to 795,980
_03815
IAI47_03820: IAI47_03820 - site-specific tyrosine recombinase XerD, at 796,083 to 796,976
_03820
IAI47_03825: IAI47_03825 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 796,998 to 797,711
_03825
IAI47_03830: IAI47_03830 - single-stranded-DNA-specific exonuclease RecJ, at 797,715 to 799,451
_03830
Position (kb) 796
797 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 795.100 kb on + strand, within IAI47_03810 at 795.101 kb on - strand, within IAI47_03810 at 795.177 kb on + strand, within IAI47_03810 at 795.178 kb on - strand, within IAI47_03810 at 795.178 kb on - strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.348 kb on + strand at 795.348 kb on + strand at 795.349 kb on - strand at 795.380 kb on + strand at 795.381 kb on - strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.400 kb on - strand at 795.400 kb on - strand at 795.400 kb on - strand at 795.400 kb on - strand at 795.400 kb on - strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.403 kb on - strand at 795.403 kb on - strand at 795.403 kb on - strand at 795.433 kb on + strand at 795.433 kb on + strand at 795.434 kb on - strand at 795.434 kb on - strand at 795.489 kb on + strand at 795.490 kb on - strand at 795.490 kb on - strand at 795.490 kb on - strand at 795.490 kb on - strand at 795.490 kb on - strand at 795.610 kb on + strand, within IAI47_03815 at 795.610 kb on + strand, within IAI47_03815 at 795.610 kb on + strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.629 kb on - strand, within IAI47_03815 at 795.687 kb on + strand, within IAI47_03815 at 795.687 kb on + strand, within IAI47_03815 at 795.703 kb on + strand, within IAI47_03815 at 795.704 kb on - strand, within IAI47_03815 at 795.727 kb on + strand, within IAI47_03815 at 795.728 kb on - strand, within IAI47_03815 at 795.728 kb on - strand, within IAI47_03815 at 795.728 kb on - strand, within IAI47_03815 at 795.844 kb on + strand, within IAI47_03815 at 795.844 kb on + strand, within IAI47_03815 at 795.844 kb on + strand, within IAI47_03815 at 795.844 kb on + strand, within IAI47_03815 at 795.882 kb on - strand, within IAI47_03815 at 795.882 kb on - strand, within IAI47_03815 at 795.882 kb on - strand, within IAI47_03815 at 795.895 kb on - strand, within IAI47_03815 at 795.944 kb on - strand at 795.944 kb on - strand at 795.950 kb on + strand at 795.950 kb on + strand at 795.951 kb on - strand at 795.987 kb on - strand at 795.997 kb on - strand at 795.997 kb on - strand at 796.020 kb on + strand at 796.021 kb on - strand at 796.046 kb on + strand at 796.047 kb on - strand at 796.061 kb on + strand at 796.061 kb on + strand at 796.151 kb on + strand at 796.152 kb on - strand at 796.152 kb on - strand at 796.279 kb on - strand, within IAI47_03820 at 796.463 kb on + strand, within IAI47_03820 at 796.478 kb on - strand, within IAI47_03820 at 796.506 kb on + strand, within IAI47_03820 at 796.653 kb on + strand, within IAI47_03820 at 796.653 kb on + strand, within IAI47_03820 at 796.654 kb on - strand, within IAI47_03820 at 796.654 kb on - strand, within IAI47_03820 at 796.655 kb on + strand, within IAI47_03820 at 796.655 kb on + strand, within IAI47_03820 at 796.655 kb on + strand, within IAI47_03820 at 796.768 kb on - strand, within IAI47_03820 at 796.813 kb on + strand, within IAI47_03820 at 796.813 kb on + strand, within IAI47_03820 at 796.814 kb on - strand, within IAI47_03820 at 796.814 kb on - strand, within IAI47_03820 at 796.889 kb on + strand at 796.889 kb on + strand at 796.890 kb on - strand at 796.890 kb on - strand at 796.987 kb on + strand at 796.987 kb on + strand at 796.988 kb on - strand at 796.988 kb on - strand at 796.988 kb on - strand at 796.994 kb on - strand at 797.088 kb on - strand, within IAI47_03825 at 797.172 kb on + strand, within IAI47_03825 at 797.172 kb on + strand, within IAI47_03825 at 797.172 kb on + strand, within IAI47_03825 at 797.172 kb on + strand, within IAI47_03825 at 797.173 kb on - strand, within IAI47_03825 at 797.173 kb on - strand, within IAI47_03825 at 797.173 kb on - strand, within IAI47_03825 at 797.173 kb on - strand, within IAI47_03825 at 797.173 kb on - strand, within IAI47_03825 at 797.173 kb on - strand, within IAI47_03825 at 797.173 kb on - strand, within IAI47_03825 at 797.173 kb on - strand, within IAI47_03825 at 797.173 kb on - strand, within IAI47_03825 at 797.177 kb on + strand, within IAI47_03825 at 797.195 kb on + strand, within IAI47_03825 at 797.195 kb on + strand, within IAI47_03825 at 797.195 kb on + strand, within IAI47_03825 at 797.195 kb on + strand, within IAI47_03825 at 797.195 kb on + strand, within IAI47_03825 at 797.195 kb on + strand, within IAI47_03825 at 797.196 kb on - strand, within IAI47_03825 at 797.196 kb on - strand, within IAI47_03825 at 797.196 kb on - strand, within IAI47_03825 at 797.196 kb on - strand, within IAI47_03825 at 797.196 kb on - strand, within IAI47_03825 at 797.196 kb on - strand, within IAI47_03825 at 797.196 kb on - strand, within IAI47_03825 at 797.196 kb on - strand, within IAI47_03825 at 797.196 kb on - strand, within IAI47_03825 at 797.214 kb on + strand, within IAI47_03825 at 797.214 kb on + strand, within IAI47_03825 at 797.214 kb on + strand, within IAI47_03825 at 797.214 kb on + strand, within IAI47_03825 at 797.215 kb on - strand, within IAI47_03825 at 797.215 kb on - strand, within IAI47_03825 at 797.301 kb on + strand, within IAI47_03825 at 797.301 kb on + strand, within IAI47_03825 at 797.301 kb on + strand, within IAI47_03825 at 797.302 kb on - strand, within IAI47_03825 at 797.358 kb on + strand, within IAI47_03825 at 797.358 kb on + strand, within IAI47_03825 at 797.358 kb on + strand, within IAI47_03825 at 797.391 kb on + strand, within IAI47_03825 at 797.391 kb on + strand, within IAI47_03825 at 797.391 kb on + strand, within IAI47_03825 at 797.391 kb on + strand, within IAI47_03825 at 797.391 kb on + strand, within IAI47_03825 at 797.392 kb on - strand, within IAI47_03825 at 797.408 kb on + strand, within IAI47_03825 at 797.408 kb on + strand, within IAI47_03825 at 797.409 kb on - strand, within IAI47_03825 at 797.418 kb on + strand, within IAI47_03825 at 797.498 kb on + strand, within IAI47_03825 at 797.498 kb on + strand, within IAI47_03825 at 797.499 kb on - strand, within IAI47_03825 at 797.499 kb on - strand, within IAI47_03825 at 797.499 kb on - strand, within IAI47_03825 at 797.567 kb on + strand, within IAI47_03825 at 797.580 kb on + strand, within IAI47_03825 at 797.581 kb on - strand, within IAI47_03825 at 797.581 kb on - strand, within IAI47_03825 at 797.581 kb on - strand, within IAI47_03825 at 797.655 kb on + strand at 797.655 kb on - strand at 797.656 kb on - strand at 797.719 kb on + strand at 797.719 kb on + strand at 797.720 kb on - strand at 797.805 kb on + strand at 797.805 kb on + strand at 797.806 kb on - strand at 797.806 kb on - strand at 797.868 kb on + strand at 797.868 kb on + strand at 797.869 kb on - strand at 797.939 kb on + strand, within IAI47_03830 at 797.939 kb on + strand, within IAI47_03830 at 797.939 kb on + strand, within IAI47_03830 at 797.940 kb on - strand, within IAI47_03830 at 797.940 kb on - strand, within IAI47_03830 at 797.940 kb on - strand, within IAI47_03830
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 795,100 + IAI47_03810 0.31 +0.9 795,101 - IAI47_03810 0.31 +1.8 795,177 + IAI47_03810 0.50 -0.0 795,178 - IAI47_03810 0.50 +0.8 795,178 - IAI47_03810 0.50 -0.4 795,322 + IAI47_03810 0.85 +0.4 795,322 + IAI47_03810 0.85 -0.6 795,322 + IAI47_03810 0.85 -0.9 795,322 + IAI47_03810 0.85 +1.6 795,322 + IAI47_03810 0.85 +0.6 795,323 - IAI47_03810 0.85 -0.5 795,323 - IAI47_03810 0.85 -0.3 795,323 - IAI47_03810 0.85 -0.3 795,323 - IAI47_03810 0.85 +0.4 795,323 - IAI47_03810 0.85 -0.2 795,323 - IAI47_03810 0.85 -0.8 795,323 - IAI47_03810 0.85 +0.7 795,348 + -0.2 795,348 + -1.0 795,349 - -0.4 795,380 + +0.4 795,381 - +0.9 795,399 + -0.7 795,399 + -1.0 795,399 + +0.4 795,399 + -1.0 795,399 + -0.2 795,399 + +0.6 795,399 + -0.6 795,399 + -1.2 795,400 - -0.6 795,400 - +2.8 795,400 - -0.4 795,400 - -0.7 795,400 - +0.7 795,402 + +1.6 795,402 + +0.1 795,402 + -0.6 795,402 + +1.7 795,402 + -0.6 795,402 + +0.1 795,402 + +0.5 795,403 - -1.0 795,403 - -0.5 795,403 - +0.4 795,433 + +2.4 795,433 + -0.4 795,434 - -0.6 795,434 - +0.2 795,489 + +0.2 795,490 - -1.8 795,490 - -1.0 795,490 - -0.3 795,490 - +0.8 795,490 - -0.6 795,610 + IAI47_03815 0.29 +2.0 795,610 + IAI47_03815 0.29 +0.4 795,610 + IAI47_03815 0.29 +0.2 795,611 - IAI47_03815 0.29 +0.4 795,611 - IAI47_03815 0.29 -0.3 795,611 - IAI47_03815 0.29 -0.7 795,611 - IAI47_03815 0.29 +1.4 795,611 - IAI47_03815 0.29 +0.4 795,629 - IAI47_03815 0.32 +1.2 795,687 + IAI47_03815 0.43 +1.2 795,687 + IAI47_03815 0.43 +0.0 795,703 + IAI47_03815 0.46 -2.2 795,704 - IAI47_03815 0.47 +0.8 795,727 + IAI47_03815 0.51 +0.6 795,728 - IAI47_03815 0.51 -1.1 795,728 - IAI47_03815 0.51 -3.2 795,728 - IAI47_03815 0.51 -0.9 795,844 + IAI47_03815 0.74 +0.6 795,844 + IAI47_03815 0.74 -0.1 795,844 + IAI47_03815 0.74 -0.4 795,844 + IAI47_03815 0.74 +0.0 795,882 - IAI47_03815 0.81 -0.4 795,882 - IAI47_03815 0.81 +0.9 795,882 - IAI47_03815 0.81 +0.4 795,895 - IAI47_03815 0.83 +0.8 795,944 - -0.6 795,944 - -0.3 795,950 + -0.2 795,950 + +0.7 795,951 - +0.4 795,987 - +0.4 795,997 - +0.7 795,997 - -0.5 796,020 + +0.7 796,021 - +0.4 796,046 + -0.2 796,047 - +1.2 796,061 + -0.1 796,061 + -1.0 796,151 + -0.6 796,152 - +0.4 796,152 - -2.5 796,279 - IAI47_03820 0.22 -2.0 796,463 + IAI47_03820 0.43 -1.6 796,478 - IAI47_03820 0.44 -2.2 796,506 + IAI47_03820 0.47 -2.0 796,653 + IAI47_03820 0.64 -1.2 796,653 + IAI47_03820 0.64 -0.6 796,654 - IAI47_03820 0.64 +0.0 796,654 - IAI47_03820 0.64 +0.8 796,655 + IAI47_03820 0.64 +0.4 796,655 + IAI47_03820 0.64 -2.0 796,655 + IAI47_03820 0.64 -1.6 796,768 - IAI47_03820 0.77 -2.0 796,813 + IAI47_03820 0.82 -2.0 796,813 + IAI47_03820 0.82 -1.2 796,814 - IAI47_03820 0.82 -1.6 796,814 - IAI47_03820 0.82 -1.2 796,889 + -1.2 796,889 + -3.1 796,890 - -2.6 796,890 - +0.4 796,987 + -0.2 796,987 + -0.6 796,988 - -0.6 796,988 - +0.9 796,988 - +0.4 796,994 - -0.6 797,088 - IAI47_03825 0.13 +0.8 797,172 + IAI47_03825 0.24 +0.4 797,172 + IAI47_03825 0.24 +0.4 797,172 + IAI47_03825 0.24 -0.4 797,172 + IAI47_03825 0.24 -0.2 797,173 - IAI47_03825 0.25 -1.0 797,173 - IAI47_03825 0.25 +0.9 797,173 - IAI47_03825 0.25 -0.2 797,173 - IAI47_03825 0.25 +2.9 797,173 - IAI47_03825 0.25 -0.0 797,173 - IAI47_03825 0.25 +0.4 797,173 - IAI47_03825 0.25 +0.6 797,173 - IAI47_03825 0.25 +2.1 797,173 - IAI47_03825 0.25 -0.3 797,177 + IAI47_03825 0.25 -0.4 797,195 + IAI47_03825 0.28 +1.1 797,195 + IAI47_03825 0.28 -0.4 797,195 + IAI47_03825 0.28 +1.4 797,195 + IAI47_03825 0.28 -1.9 797,195 + IAI47_03825 0.28 +0.2 797,195 + IAI47_03825 0.28 -0.3 797,196 - IAI47_03825 0.28 -0.4 797,196 - IAI47_03825 0.28 -0.5 797,196 - IAI47_03825 0.28 -0.7 797,196 - IAI47_03825 0.28 -0.6 797,196 - IAI47_03825 0.28 -0.4 797,196 - IAI47_03825 0.28 +0.0 797,196 - IAI47_03825 0.28 +0.0 797,196 - IAI47_03825 0.28 -0.5 797,196 - IAI47_03825 0.28 +0.2 797,214 + IAI47_03825 0.30 -0.6 797,214 + IAI47_03825 0.30 +0.8 797,214 + IAI47_03825 0.30 -0.3 797,214 + IAI47_03825 0.30 -1.1 797,215 - IAI47_03825 0.30 +0.1 797,215 - IAI47_03825 0.30 -0.1 797,301 + IAI47_03825 0.42 -0.1 797,301 + IAI47_03825 0.42 +0.8 797,301 + IAI47_03825 0.42 +2.1 797,302 - IAI47_03825 0.43 +1.0 797,358 + IAI47_03825 0.50 +0.8 797,358 + IAI47_03825 0.50 -1.1 797,358 + IAI47_03825 0.50 +0.5 797,391 + IAI47_03825 0.55 +0.7 797,391 + IAI47_03825 0.55 +0.1 797,391 + IAI47_03825 0.55 -1.0 797,391 + IAI47_03825 0.55 +0.9 797,391 + IAI47_03825 0.55 -1.0 797,392 - IAI47_03825 0.55 +1.1 797,408 + IAI47_03825 0.57 -0.6 797,408 + IAI47_03825 0.57 -1.6 797,409 - IAI47_03825 0.58 -2.2 797,418 + IAI47_03825 0.59 +0.9 797,498 + IAI47_03825 0.70 +0.9 797,498 + IAI47_03825 0.70 +1.7 797,499 - IAI47_03825 0.70 -0.8 797,499 - IAI47_03825 0.70 +0.4 797,499 - IAI47_03825 0.70 +1.4 797,567 + IAI47_03825 0.80 -0.2 797,580 + IAI47_03825 0.82 +0.7 797,581 - IAI47_03825 0.82 -0.1 797,581 - IAI47_03825 0.82 -1.2 797,581 - IAI47_03825 0.82 -0.3 797,655 + -0.4 797,655 - +1.8 797,656 - +0.4 797,719 + -0.2 797,719 + +0.1 797,720 - -2.5 797,805 + +0.4 797,805 + -0.6 797,806 - +0.1 797,806 - +0.8 797,868 + +0.4 797,868 + +0.2 797,869 - -0.8 797,939 + IAI47_03830 0.13 +0.1 797,939 + IAI47_03830 0.13 +0.9 797,939 + IAI47_03830 0.13 +1.4 797,940 - IAI47_03830 0.13 -2.2 797,940 - IAI47_03830 0.13 -0.8 797,940 - IAI47_03830 0.13 -1.5
Or see this region's nucleotide sequence