Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03740 and IAI47_03745 are separated by 170 nucleotides IAI47_03745 and IAI47_03750 are separated by 46 nucleotides IAI47_03750 and IAI47_03755 overlap by 4 nucleotides
IAI47_03740: IAI47_03740 - cell division protein ZapA, at 779,786 to 780,115
_03740
IAI47_03745: IAI47_03745 - YecA family protein, at 780,286 to 780,864
_03745
IAI47_03750: IAI47_03750 - Xaa-Pro aminopeptidase, at 780,911 to 782,233
_03750
IAI47_03755: IAI47_03755 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 782,230 to 783,408
_03755
Position (kb) 780
781
782
783 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 779.968 kb on + strand, within IAI47_03740 at 779.968 kb on + strand, within IAI47_03740 at 779.968 kb on + strand, within IAI47_03740 at 779.969 kb on - strand, within IAI47_03740 at 779.980 kb on + strand, within IAI47_03740 at 779.980 kb on + strand, within IAI47_03740 at 779.980 kb on + strand, within IAI47_03740 at 779.980 kb on + strand, within IAI47_03740 at 779.980 kb on + strand, within IAI47_03740 at 779.994 kb on - strand, within IAI47_03740 at 780.031 kb on + strand, within IAI47_03740 at 780.031 kb on + strand, within IAI47_03740 at 780.031 kb on + strand, within IAI47_03740 at 780.032 kb on - strand, within IAI47_03740 at 780.093 kb on - strand at 780.098 kb on + strand at 780.134 kb on + strand at 780.134 kb on + strand at 780.154 kb on + strand at 780.154 kb on + strand at 780.154 kb on + strand at 780.155 kb on - strand at 780.184 kb on + strand at 780.184 kb on + strand at 780.184 kb on + strand at 780.184 kb on + strand at 780.184 kb on + strand at 780.184 kb on + strand at 780.184 kb on + strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.186 kb on + strand at 780.186 kb on + strand at 780.186 kb on + strand at 780.186 kb on + strand at 780.186 kb on + strand at 780.187 kb on - strand at 780.187 kb on - strand at 780.187 kb on - strand at 780.187 kb on - strand at 780.188 kb on + strand at 780.188 kb on + strand at 780.188 kb on + strand at 780.188 kb on + strand at 780.188 kb on + strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.201 kb on + strand at 780.201 kb on + strand at 780.202 kb on - strand at 780.202 kb on - strand at 780.202 kb on - strand at 780.206 kb on + strand at 780.206 kb on + strand at 780.207 kb on - strand at 780.207 kb on - strand at 780.207 kb on - strand at 780.238 kb on + strand at 780.239 kb on - strand at 780.239 kb on - strand at 780.244 kb on + strand at 780.244 kb on + strand at 780.245 kb on - strand at 780.249 kb on + strand at 780.249 kb on + strand at 780.249 kb on + strand at 780.250 kb on - strand at 780.260 kb on + strand at 780.260 kb on + strand at 780.261 kb on - strand at 780.285 kb on + strand at 780.285 kb on + strand at 780.285 kb on + strand at 780.285 kb on + strand at 780.286 kb on - strand at 780.286 kb on - strand at 780.293 kb on + strand at 780.293 kb on + strand at 780.293 kb on + strand at 780.294 kb on - strand at 780.294 kb on - strand at 780.294 kb on - strand at 780.313 kb on + strand at 780.313 kb on + strand at 780.354 kb on + strand, within IAI47_03745 at 780.354 kb on + strand, within IAI47_03745 at 780.354 kb on + strand, within IAI47_03745 at 780.354 kb on + strand, within IAI47_03745 at 780.355 kb on - strand, within IAI47_03745 at 780.383 kb on + strand, within IAI47_03745 at 780.434 kb on + strand, within IAI47_03745 at 780.434 kb on + strand, within IAI47_03745 at 780.516 kb on + strand, within IAI47_03745 at 780.516 kb on + strand, within IAI47_03745 at 780.578 kb on + strand, within IAI47_03745 at 780.578 kb on + strand, within IAI47_03745 at 780.578 kb on + strand, within IAI47_03745 at 780.578 kb on + strand, within IAI47_03745 at 780.579 kb on - strand, within IAI47_03745 at 780.639 kb on - strand, within IAI47_03745 at 780.639 kb on - strand, within IAI47_03745 at 780.648 kb on + strand, within IAI47_03745 at 780.648 kb on + strand, within IAI47_03745 at 780.649 kb on - strand, within IAI47_03745 at 780.649 kb on - strand, within IAI47_03745 at 780.657 kb on + strand, within IAI47_03745 at 780.775 kb on + strand, within IAI47_03745 at 780.775 kb on + strand, within IAI47_03745 at 780.775 kb on + strand, within IAI47_03745 at 780.775 kb on + strand, within IAI47_03745 at 780.775 kb on + strand, within IAI47_03745 at 780.776 kb on - strand, within IAI47_03745 at 780.776 kb on - strand, within IAI47_03745 at 780.776 kb on - strand, within IAI47_03745 at 780.776 kb on - strand, within IAI47_03745 at 780.776 kb on - strand, within IAI47_03745 at 780.807 kb on + strand at 780.807 kb on + strand at 780.807 kb on + strand at 780.807 kb on + strand at 780.858 kb on - strand at 780.858 kb on - strand at 780.858 kb on - strand at 780.858 kb on - strand at 780.858 kb on - strand at 780.862 kb on + strand at 780.862 kb on + strand at 780.862 kb on + strand at 780.862 kb on + strand at 780.863 kb on - strand at 780.863 kb on - strand at 780.895 kb on + strand at 780.929 kb on + strand at 780.929 kb on + strand at 781.028 kb on + strand at 781.072 kb on + strand, within IAI47_03750 at 781.230 kb on + strand, within IAI47_03750 at 781.230 kb on + strand, within IAI47_03750 at 781.289 kb on + strand, within IAI47_03750 at 781.307 kb on + strand, within IAI47_03750 at 781.307 kb on + strand, within IAI47_03750 at 781.564 kb on + strand, within IAI47_03750 at 781.564 kb on + strand, within IAI47_03750 at 781.592 kb on + strand, within IAI47_03750 at 781.592 kb on + strand, within IAI47_03750 at 781.592 kb on + strand, within IAI47_03750 at 781.592 kb on + strand, within IAI47_03750 at 781.592 kb on + strand, within IAI47_03750 at 781.592 kb on + strand, within IAI47_03750 at 781.592 kb on + strand, within IAI47_03750 at 781.592 kb on + strand, within IAI47_03750 at 781.592 kb on + strand, within IAI47_03750 at 781.592 kb on + strand, within IAI47_03750 at 781.594 kb on + strand, within IAI47_03750 at 781.594 kb on + strand, within IAI47_03750 at 781.594 kb on + strand, within IAI47_03750 at 781.594 kb on + strand, within IAI47_03750 at 781.720 kb on + strand, within IAI47_03750 at 781.775 kb on + strand, within IAI47_03750 at 781.775 kb on + strand, within IAI47_03750 at 781.775 kb on + strand, within IAI47_03750 at 781.775 kb on + strand, within IAI47_03750 at 781.775 kb on + strand, within IAI47_03750 at 781.867 kb on + strand, within IAI47_03750 at 781.867 kb on + strand, within IAI47_03750 at 781.867 kb on + strand, within IAI47_03750 at 781.949 kb on + strand, within IAI47_03750 at 781.949 kb on + strand, within IAI47_03750 at 781.949 kb on + strand, within IAI47_03750 at 781.949 kb on + strand, within IAI47_03750 at 781.949 kb on + strand, within IAI47_03750 at 781.949 kb on + strand, within IAI47_03750 at 781.949 kb on + strand, within IAI47_03750 at 781.949 kb on + strand, within IAI47_03750 at 781.949 kb on + strand, within IAI47_03750 at 781.949 kb on + strand, within IAI47_03750 at 781.949 kb on + strand, within IAI47_03750 at 781.949 kb on + strand, within IAI47_03750 at 781.949 kb on + strand, within IAI47_03750 at 781.949 kb on + strand, within IAI47_03750 at 781.949 kb on + strand, within IAI47_03750 at 781.949 kb on + strand, within IAI47_03750 at 781.951 kb on + strand, within IAI47_03750 at 781.951 kb on + strand, within IAI47_03750 at 781.951 kb on + strand, within IAI47_03750 at 781.951 kb on + strand, within IAI47_03750 at 781.951 kb on + strand, within IAI47_03750 at 781.951 kb on + strand, within IAI47_03750 at 781.951 kb on + strand, within IAI47_03750 at 781.951 kb on + strand, within IAI47_03750 at 781.951 kb on + strand, within IAI47_03750 at 781.951 kb on + strand, within IAI47_03750 at 781.951 kb on + strand, within IAI47_03750 at 781.951 kb on + strand, within IAI47_03750 at 781.995 kb on + strand, within IAI47_03750 at 781.995 kb on + strand, within IAI47_03750 at 781.995 kb on + strand, within IAI47_03750 at 781.995 kb on + strand, within IAI47_03750 at 781.995 kb on + strand, within IAI47_03750 at 781.995 kb on + strand, within IAI47_03750 at 781.995 kb on + strand, within IAI47_03750 at 782.069 kb on + strand, within IAI47_03750 at 782.069 kb on + strand, within IAI47_03750 at 782.069 kb on + strand, within IAI47_03750 at 782.069 kb on + strand, within IAI47_03750 at 782.069 kb on + strand, within IAI47_03750 at 782.069 kb on + strand, within IAI47_03750 at 782.069 kb on + strand, within IAI47_03750 at 782.071 kb on + strand, within IAI47_03750 at 782.091 kb on + strand, within IAI47_03750
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 779,968 + IAI47_03740 0.55 -1.0 779,968 + IAI47_03740 0.55 +0.8 779,968 + IAI47_03740 0.55 +0.8 779,969 - IAI47_03740 0.55 +1.4 779,980 + IAI47_03740 0.59 +0.4 779,980 + IAI47_03740 0.59 +0.9 779,980 + IAI47_03740 0.59 +0.4 779,980 + IAI47_03740 0.59 +0.4 779,980 + IAI47_03740 0.59 +1.4 779,994 - IAI47_03740 0.63 -2.2 780,031 + IAI47_03740 0.74 -0.2 780,031 + IAI47_03740 0.74 +0.5 780,031 + IAI47_03740 0.74 +1.4 780,032 - IAI47_03740 0.75 -0.5 780,093 - -1.2 780,098 + -0.2 780,134 + -0.4 780,134 + +1.4 780,154 + -1.1 780,154 + +0.1 780,154 + -0.2 780,155 - -1.4 780,184 + -0.9 780,184 + +0.8 780,184 + +0.4 780,184 + -1.2 780,184 + -2.6 780,184 + -0.3 780,184 + -0.2 780,185 - +2.0 780,185 - +0.4 780,185 - -1.2 780,185 - +1.1 780,185 - -0.2 780,185 - +0.8 780,185 - -0.1 780,185 - +0.4 780,185 - -0.1 780,185 - -1.6 780,185 - +0.1 780,185 - +0.1 780,185 - +0.7 780,185 - -0.4 780,185 - +0.4 780,186 + +1.0 780,186 + +0.8 780,186 + +1.6 780,186 + -0.6 780,186 + +0.9 780,187 - +0.8 780,187 - -1.5 780,187 - +0.6 780,187 - -0.2 780,188 + -0.1 780,188 + +1.4 780,188 + -0.6 780,188 + -0.6 780,188 + +0.2 780,189 - +0.5 780,189 - +0.8 780,189 - -0.2 780,189 - +0.0 780,189 - -0.6 780,189 - -0.6 780,189 - -0.7 780,189 - +0.4 780,201 + -1.2 780,201 + +0.4 780,202 - +0.1 780,202 - +0.4 780,202 - -0.4 780,206 + -0.6 780,206 + -1.2 780,207 - -0.4 780,207 - +0.4 780,207 - +0.2 780,238 + +1.4 780,239 - -0.1 780,239 - -0.2 780,244 + -0.1 780,244 + +0.4 780,245 - -0.4 780,249 + +0.5 780,249 + -0.6 780,249 + -0.3 780,250 - +0.8 780,260 + +0.4 780,260 + -0.0 780,261 - +0.0 780,285 + -0.7 780,285 + +1.2 780,285 + -0.1 780,285 + +0.4 780,286 - +0.4 780,286 - +0.4 780,293 + +0.0 780,293 + -0.2 780,293 + +0.9 780,294 - -0.2 780,294 - -0.2 780,294 - +1.5 780,313 + +0.8 780,313 + -0.2 780,354 + IAI47_03745 0.12 -0.5 780,354 + IAI47_03745 0.12 -0.0 780,354 + IAI47_03745 0.12 +0.9 780,354 + IAI47_03745 0.12 +0.6 780,355 - IAI47_03745 0.12 +0.6 780,383 + IAI47_03745 0.17 +2.4 780,434 + IAI47_03745 0.26 -2.2 780,434 + IAI47_03745 0.26 -0.1 780,516 + IAI47_03745 0.40 -0.1 780,516 + IAI47_03745 0.40 +0.2 780,578 + IAI47_03745 0.50 -0.2 780,578 + IAI47_03745 0.50 +1.4 780,578 + IAI47_03745 0.50 +0.9 780,578 + IAI47_03745 0.50 +1.4 780,579 - IAI47_03745 0.51 -1.5 780,639 - IAI47_03745 0.61 +1.4 780,639 - IAI47_03745 0.61 +0.8 780,648 + IAI47_03745 0.63 -1.2 780,648 + IAI47_03745 0.63 -1.4 780,649 - IAI47_03745 0.63 +0.2 780,649 - IAI47_03745 0.63 -0.2 780,657 + IAI47_03745 0.64 -0.6 780,775 + IAI47_03745 0.84 +0.2 780,775 + IAI47_03745 0.84 +0.6 780,775 + IAI47_03745 0.84 -0.6 780,775 + IAI47_03745 0.84 +0.1 780,775 + IAI47_03745 0.84 +0.1 780,776 - IAI47_03745 0.85 -1.0 780,776 - IAI47_03745 0.85 -0.8 780,776 - IAI47_03745 0.85 -1.2 780,776 - IAI47_03745 0.85 +0.9 780,776 - IAI47_03745 0.85 -0.6 780,807 + -0.0 780,807 + +1.4 780,807 + +1.5 780,807 + +0.1 780,858 - +0.5 780,858 - +0.1 780,858 - +0.4 780,858 - +2.2 780,858 - +0.7 780,862 + -0.6 780,862 + -1.5 780,862 + +1.4 780,862 + -0.2 780,863 - -0.2 780,863 - +1.8 780,895 + +1.4 780,929 + +0.5 780,929 + +0.6 781,028 + -0.4 781,072 + IAI47_03750 0.12 +0.4 781,230 + IAI47_03750 0.24 -0.6 781,230 + IAI47_03750 0.24 +0.4 781,289 + IAI47_03750 0.29 +0.9 781,307 + IAI47_03750 0.30 -1.0 781,307 + IAI47_03750 0.30 -1.0 781,564 + IAI47_03750 0.49 -2.2 781,564 + IAI47_03750 0.49 +0.1 781,592 + IAI47_03750 0.51 -0.6 781,592 + IAI47_03750 0.51 +0.9 781,592 + IAI47_03750 0.51 -0.3 781,592 + IAI47_03750 0.51 +0.8 781,592 + IAI47_03750 0.51 -0.4 781,592 + IAI47_03750 0.51 -0.1 781,592 + IAI47_03750 0.51 -2.2 781,592 + IAI47_03750 0.51 -0.3 781,592 + IAI47_03750 0.51 +0.7 781,592 + IAI47_03750 0.51 -0.4 781,594 + IAI47_03750 0.52 +0.8 781,594 + IAI47_03750 0.52 +0.9 781,594 + IAI47_03750 0.52 -0.5 781,594 + IAI47_03750 0.52 +1.1 781,720 + IAI47_03750 0.61 -0.2 781,775 + IAI47_03750 0.65 +0.8 781,775 + IAI47_03750 0.65 -0.6 781,775 + IAI47_03750 0.65 +1.0 781,775 + IAI47_03750 0.65 -2.2 781,775 + IAI47_03750 0.65 -1.2 781,867 + IAI47_03750 0.72 -0.1 781,867 + IAI47_03750 0.72 -1.1 781,867 + IAI47_03750 0.72 -0.1 781,949 + IAI47_03750 0.78 +0.1 781,949 + IAI47_03750 0.78 -1.2 781,949 + IAI47_03750 0.78 -1.2 781,949 + IAI47_03750 0.78 +0.0 781,949 + IAI47_03750 0.78 -0.6 781,949 + IAI47_03750 0.78 -0.2 781,949 + IAI47_03750 0.78 +1.6 781,949 + IAI47_03750 0.78 +0.4 781,949 + IAI47_03750 0.78 +0.4 781,949 + IAI47_03750 0.78 -0.0 781,949 + IAI47_03750 0.78 -0.8 781,949 + IAI47_03750 0.78 -0.2 781,949 + IAI47_03750 0.78 -1.0 781,949 + IAI47_03750 0.78 +0.8 781,949 + IAI47_03750 0.78 -1.6 781,949 + IAI47_03750 0.78 +1.4 781,951 + IAI47_03750 0.79 -0.2 781,951 + IAI47_03750 0.79 -0.4 781,951 + IAI47_03750 0.79 -1.5 781,951 + IAI47_03750 0.79 +0.5 781,951 + IAI47_03750 0.79 -0.5 781,951 + IAI47_03750 0.79 -0.1 781,951 + IAI47_03750 0.79 +0.4 781,951 + IAI47_03750 0.79 +2.9 781,951 + IAI47_03750 0.79 -0.2 781,951 + IAI47_03750 0.79 -0.6 781,951 + IAI47_03750 0.79 -0.4 781,951 + IAI47_03750 0.79 +0.8 781,995 + IAI47_03750 0.82 -1.0 781,995 + IAI47_03750 0.82 -0.5 781,995 + IAI47_03750 0.82 -0.1 781,995 + IAI47_03750 0.82 +0.4 781,995 + IAI47_03750 0.82 -2.5 781,995 + IAI47_03750 0.82 +0.2 781,995 + IAI47_03750 0.82 -1.2 782,069 + IAI47_03750 0.88 -0.5 782,069 + IAI47_03750 0.88 -2.2 782,069 + IAI47_03750 0.88 +0.7 782,069 + IAI47_03750 0.88 -1.3 782,069 + IAI47_03750 0.88 +0.4 782,069 + IAI47_03750 0.88 +0.4 782,069 + IAI47_03750 0.88 +0.4 782,071 + IAI47_03750 0.88 -0.2 782,091 + IAI47_03750 0.89 -0.6
Or see this region's nucleotide sequence