Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03540 and IAI47_03545 are separated by 561 nucleotides IAI47_03545 and IAI47_03550 are separated by 971 nucleotides
IAI47_03540: IAI47_03540 - oxidoreductase, at 738,083 to 739,066
_03540
IAI47_03545: IAI47_03545 - ornithine decarboxylase, at 739,628 to 741,781
_03545
IAI47_03550: IAI47_03550 - membrane-bound lytic murein transglycosylase MltC, at 742,753 to 743,832
_03550
Position (kb) 739
740
741
742 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 738.857 kb on + strand, within IAI47_03540 at 738.857 kb on + strand, within IAI47_03540 at 738.878 kb on - strand, within IAI47_03540 at 738.905 kb on + strand, within IAI47_03540 at 738.925 kb on + strand, within IAI47_03540 at 738.926 kb on - strand, within IAI47_03540 at 738.926 kb on - strand, within IAI47_03540 at 738.942 kb on + strand, within IAI47_03540 at 738.942 kb on + strand, within IAI47_03540 at 738.942 kb on + strand, within IAI47_03540 at 738.942 kb on + strand, within IAI47_03540 at 738.942 kb on + strand, within IAI47_03540 at 738.942 kb on + strand, within IAI47_03540 at 738.942 kb on + strand, within IAI47_03540 at 738.943 kb on - strand, within IAI47_03540 at 738.957 kb on + strand, within IAI47_03540 at 738.957 kb on + strand, within IAI47_03540 at 738.957 kb on + strand, within IAI47_03540 at 738.957 kb on + strand, within IAI47_03540 at 738.957 kb on + strand, within IAI47_03540 at 738.957 kb on + strand, within IAI47_03540 at 738.958 kb on - strand, within IAI47_03540 at 738.958 kb on - strand, within IAI47_03540 at 738.958 kb on - strand, within IAI47_03540 at 738.958 kb on - strand, within IAI47_03540 at 738.958 kb on - strand, within IAI47_03540 at 738.958 kb on - strand, within IAI47_03540 at 738.958 kb on - strand, within IAI47_03540 at 739.026 kb on + strand at 739.102 kb on + strand at 739.103 kb on - strand at 739.117 kb on + strand at 739.118 kb on - strand at 739.118 kb on - strand at 739.191 kb on + strand at 739.191 kb on + strand at 739.191 kb on + strand at 739.191 kb on + strand at 739.192 kb on - strand at 739.192 kb on - strand at 739.192 kb on - strand at 739.215 kb on + strand at 739.256 kb on - strand at 739.331 kb on - strand at 739.348 kb on - strand at 739.348 kb on - strand at 739.427 kb on - strand at 739.482 kb on - strand at 739.542 kb on + strand at 739.542 kb on + strand at 739.543 kb on - strand at 739.557 kb on - strand at 739.559 kb on + strand at 739.559 kb on + strand at 739.560 kb on - strand at 739.560 kb on - strand at 739.616 kb on - strand at 739.628 kb on - strand at 739.628 kb on - strand at 739.628 kb on - strand at 739.698 kb on + strand at 739.698 kb on + strand at 739.699 kb on - strand at 739.699 kb on - strand at 739.699 kb on - strand at 739.723 kb on + strand at 739.724 kb on - strand at 739.792 kb on + strand at 739.801 kb on + strand at 739.801 kb on + strand at 739.922 kb on + strand, within IAI47_03545 at 739.922 kb on + strand, within IAI47_03545 at 739.923 kb on - strand, within IAI47_03545 at 739.923 kb on - strand, within IAI47_03545 at 739.935 kb on + strand, within IAI47_03545 at 739.935 kb on + strand, within IAI47_03545 at 739.935 kb on + strand, within IAI47_03545 at 739.935 kb on + strand, within IAI47_03545 at 739.935 kb on + strand, within IAI47_03545 at 739.936 kb on - strand, within IAI47_03545 at 739.936 kb on - strand, within IAI47_03545 at 739.967 kb on + strand, within IAI47_03545 at 739.967 kb on + strand, within IAI47_03545 at 739.968 kb on - strand, within IAI47_03545 at 739.968 kb on - strand, within IAI47_03545 at 739.968 kb on - strand, within IAI47_03545 at 740.027 kb on - strand, within IAI47_03545 at 740.027 kb on - strand, within IAI47_03545 at 740.027 kb on - strand, within IAI47_03545 at 740.027 kb on - strand, within IAI47_03545 at 740.054 kb on + strand, within IAI47_03545 at 740.054 kb on + strand, within IAI47_03545 at 740.055 kb on - strand, within IAI47_03545 at 740.064 kb on - strand, within IAI47_03545 at 740.089 kb on + strand, within IAI47_03545 at 740.089 kb on + strand, within IAI47_03545 at 740.089 kb on + strand, within IAI47_03545 at 740.089 kb on + strand, within IAI47_03545 at 740.089 kb on + strand, within IAI47_03545 at 740.090 kb on - strand, within IAI47_03545 at 740.090 kb on - strand, within IAI47_03545 at 740.090 kb on - strand, within IAI47_03545 at 740.090 kb on - strand, within IAI47_03545 at 740.090 kb on - strand, within IAI47_03545 at 740.090 kb on - strand, within IAI47_03545 at 740.090 kb on - strand, within IAI47_03545 at 740.159 kb on + strand, within IAI47_03545 at 740.159 kb on + strand, within IAI47_03545 at 740.159 kb on + strand, within IAI47_03545 at 740.159 kb on + strand, within IAI47_03545 at 740.159 kb on + strand, within IAI47_03545 at 740.160 kb on - strand, within IAI47_03545 at 740.160 kb on - strand, within IAI47_03545 at 740.160 kb on - strand, within IAI47_03545 at 740.160 kb on - strand, within IAI47_03545 at 740.160 kb on - strand, within IAI47_03545 at 740.160 kb on - strand, within IAI47_03545 at 740.160 kb on - strand, within IAI47_03545 at 740.160 kb on - strand, within IAI47_03545 at 740.160 kb on - strand, within IAI47_03545 at 740.192 kb on + strand, within IAI47_03545 at 740.193 kb on - strand, within IAI47_03545 at 740.204 kb on - strand, within IAI47_03545 at 740.221 kb on + strand, within IAI47_03545 at 740.221 kb on + strand, within IAI47_03545 at 740.224 kb on + strand, within IAI47_03545 at 740.224 kb on + strand, within IAI47_03545 at 740.224 kb on + strand, within IAI47_03545 at 740.224 kb on + strand, within IAI47_03545 at 740.224 kb on + strand, within IAI47_03545 at 740.224 kb on + strand, within IAI47_03545 at 740.225 kb on - strand, within IAI47_03545 at 740.229 kb on + strand, within IAI47_03545 at 740.229 kb on + strand, within IAI47_03545 at 740.293 kb on + strand, within IAI47_03545 at 740.293 kb on + strand, within IAI47_03545 at 740.293 kb on + strand, within IAI47_03545 at 740.293 kb on + strand, within IAI47_03545 at 740.293 kb on + strand, within IAI47_03545 at 740.294 kb on - strand, within IAI47_03545 at 740.294 kb on - strand, within IAI47_03545 at 740.294 kb on - strand, within IAI47_03545 at 740.294 kb on - strand, within IAI47_03545 at 740.294 kb on - strand, within IAI47_03545 at 740.337 kb on - strand, within IAI47_03545 at 740.353 kb on + strand, within IAI47_03545 at 740.353 kb on + strand, within IAI47_03545 at 740.354 kb on - strand, within IAI47_03545 at 740.354 kb on - strand, within IAI47_03545 at 740.354 kb on - strand, within IAI47_03545 at 740.368 kb on + strand, within IAI47_03545 at 740.405 kb on + strand, within IAI47_03545 at 740.405 kb on + strand, within IAI47_03545 at 740.405 kb on + strand, within IAI47_03545 at 740.405 kb on + strand, within IAI47_03545 at 740.405 kb on + strand, within IAI47_03545 at 740.405 kb on + strand, within IAI47_03545 at 740.405 kb on + strand, within IAI47_03545 at 740.406 kb on - strand, within IAI47_03545 at 740.406 kb on - strand, within IAI47_03545 at 740.492 kb on + strand, within IAI47_03545 at 740.492 kb on + strand, within IAI47_03545 at 740.492 kb on + strand, within IAI47_03545 at 740.493 kb on - strand, within IAI47_03545 at 740.493 kb on - strand, within IAI47_03545 at 740.500 kb on + strand, within IAI47_03545 at 740.500 kb on + strand, within IAI47_03545 at 740.507 kb on + strand, within IAI47_03545 at 740.507 kb on + strand, within IAI47_03545 at 740.507 kb on + strand, within IAI47_03545 at 740.508 kb on - strand, within IAI47_03545 at 740.508 kb on - strand, within IAI47_03545 at 740.508 kb on - strand, within IAI47_03545 at 740.552 kb on + strand, within IAI47_03545 at 740.552 kb on + strand, within IAI47_03545 at 740.552 kb on + strand, within IAI47_03545 at 740.553 kb on - strand, within IAI47_03545 at 740.553 kb on - strand, within IAI47_03545 at 740.553 kb on - strand, within IAI47_03545 at 740.553 kb on - strand, within IAI47_03545 at 740.553 kb on - strand, within IAI47_03545 at 740.553 kb on - strand, within IAI47_03545 at 740.553 kb on - strand, within IAI47_03545 at 740.553 kb on - strand, within IAI47_03545 at 740.583 kb on - strand, within IAI47_03545 at 740.677 kb on + strand, within IAI47_03545 at 740.677 kb on + strand, within IAI47_03545 at 740.677 kb on + strand, within IAI47_03545 at 740.678 kb on - strand, within IAI47_03545 at 740.678 kb on - strand, within IAI47_03545 at 740.678 kb on - strand, within IAI47_03545 at 740.678 kb on - strand, within IAI47_03545 at 740.678 kb on - strand, within IAI47_03545 at 740.725 kb on + strand, within IAI47_03545 at 740.725 kb on + strand, within IAI47_03545 at 740.725 kb on + strand, within IAI47_03545 at 740.725 kb on + strand, within IAI47_03545 at 740.725 kb on + strand, within IAI47_03545 at 740.725 kb on + strand, within IAI47_03545 at 740.726 kb on - strand, within IAI47_03545 at 740.726 kb on - strand, within IAI47_03545 at 740.726 kb on - strand, within IAI47_03545 at 740.773 kb on + strand, within IAI47_03545 at 740.782 kb on + strand, within IAI47_03545 at 740.782 kb on + strand, within IAI47_03545 at 740.782 kb on + strand, within IAI47_03545 at 740.783 kb on - strand, within IAI47_03545 at 740.783 kb on - strand, within IAI47_03545 at 740.810 kb on + strand, within IAI47_03545 at 740.810 kb on + strand, within IAI47_03545 at 740.811 kb on - strand, within IAI47_03545 at 740.811 kb on - strand, within IAI47_03545 at 740.911 kb on + strand, within IAI47_03545 at 740.912 kb on - strand, within IAI47_03545 at 740.964 kb on + strand, within IAI47_03545 at 740.992 kb on + strand, within IAI47_03545 at 740.992 kb on + strand, within IAI47_03545 at 741.020 kb on + strand, within IAI47_03545 at 741.021 kb on - strand, within IAI47_03545 at 741.081 kb on - strand, within IAI47_03545 at 741.102 kb on + strand, within IAI47_03545 at 741.102 kb on + strand, within IAI47_03545 at 741.102 kb on + strand, within IAI47_03545 at 741.102 kb on + strand, within IAI47_03545 at 741.102 kb on + strand, within IAI47_03545 at 741.102 kb on + strand, within IAI47_03545 at 741.102 kb on + strand, within IAI47_03545 at 741.103 kb on - strand, within IAI47_03545 at 741.103 kb on - strand, within IAI47_03545 at 741.103 kb on - strand, within IAI47_03545 at 741.103 kb on - strand, within IAI47_03545 at 741.103 kb on - strand, within IAI47_03545 at 741.103 kb on - strand, within IAI47_03545 at 741.103 kb on - strand, within IAI47_03545 at 741.109 kb on - strand, within IAI47_03545 at 741.143 kb on + strand, within IAI47_03545 at 741.143 kb on + strand, within IAI47_03545 at 741.143 kb on + strand, within IAI47_03545 at 741.144 kb on - strand, within IAI47_03545 at 741.171 kb on + strand, within IAI47_03545 at 741.171 kb on + strand, within IAI47_03545 at 741.171 kb on + strand, within IAI47_03545 at 741.171 kb on + strand, within IAI47_03545 at 741.171 kb on + strand, within IAI47_03545 at 741.182 kb on + strand, within IAI47_03545 at 741.182 kb on + strand, within IAI47_03545 at 741.183 kb on - strand, within IAI47_03545 at 741.183 kb on - strand, within IAI47_03545 at 741.183 kb on - strand, within IAI47_03545 at 741.183 kb on - strand, within IAI47_03545 at 741.183 kb on - strand, within IAI47_03545 at 741.313 kb on - strand, within IAI47_03545 at 741.353 kb on + strand, within IAI47_03545 at 741.374 kb on + strand, within IAI47_03545 at 741.374 kb on + strand, within IAI47_03545 at 741.375 kb on - strand, within IAI47_03545 at 741.375 kb on - strand, within IAI47_03545 at 741.375 kb on - strand, within IAI47_03545 at 741.375 kb on - strand, within IAI47_03545 at 741.375 kb on - strand, within IAI47_03545 at 741.375 kb on - strand, within IAI47_03545 at 741.383 kb on + strand, within IAI47_03545 at 741.383 kb on + strand, within IAI47_03545 at 741.384 kb on - strand, within IAI47_03545 at 741.384 kb on - strand, within IAI47_03545 at 741.385 kb on + strand, within IAI47_03545 at 741.385 kb on + strand, within IAI47_03545 at 741.385 kb on + strand, within IAI47_03545 at 741.385 kb on + strand, within IAI47_03545 at 741.385 kb on + strand, within IAI47_03545 at 741.385 kb on + strand, within IAI47_03545 at 741.385 kb on + strand, within IAI47_03545 at 741.385 kb on + strand, within IAI47_03545 at 741.422 kb on + strand, within IAI47_03545 at 741.423 kb on - strand, within IAI47_03545 at 741.423 kb on - strand, within IAI47_03545 at 741.423 kb on - strand, within IAI47_03545 at 741.439 kb on + strand, within IAI47_03545 at 741.518 kb on + strand, within IAI47_03545 at 741.518 kb on + strand, within IAI47_03545 at 741.518 kb on + strand, within IAI47_03545 at 741.518 kb on + strand, within IAI47_03545 at 741.519 kb on - strand, within IAI47_03545 at 741.519 kb on - strand, within IAI47_03545 at 741.519 kb on - strand, within IAI47_03545 at 741.519 kb on - strand, within IAI47_03545 at 741.520 kb on + strand, within IAI47_03545 at 741.520 kb on + strand, within IAI47_03545 at 741.520 kb on + strand, within IAI47_03545 at 741.520 kb on + strand, within IAI47_03545 at 741.520 kb on + strand, within IAI47_03545 at 741.521 kb on - strand, within IAI47_03545 at 741.521 kb on - strand, within IAI47_03545 at 741.521 kb on - strand, within IAI47_03545 at 741.594 kb on - strand at 741.654 kb on - strand at 741.654 kb on - strand at 741.654 kb on - strand at 741.679 kb on + strand at 741.679 kb on + strand at 741.679 kb on + strand at 741.679 kb on + strand at 741.679 kb on + strand at 741.679 kb on + strand at 741.679 kb on + strand at 741.680 kb on - strand at 741.680 kb on - strand at 741.680 kb on - strand at 741.680 kb on - strand at 741.680 kb on - strand at 741.684 kb on + strand at 741.720 kb on - strand at 741.720 kb on - strand at 741.720 kb on - strand at 741.749 kb on + strand at 741.749 kb on + strand at 741.749 kb on + strand at 741.749 kb on + strand at 741.749 kb on + strand at 741.750 kb on - strand at 741.750 kb on - strand at 741.750 kb on - strand at 741.750 kb on - strand at 741.750 kb on - strand at 741.750 kb on - strand at 741.750 kb on - strand at 741.750 kb on - strand at 741.763 kb on + strand at 741.763 kb on + strand at 741.763 kb on + strand at 741.763 kb on + strand at 741.764 kb on - strand at 741.764 kb on - strand at 741.764 kb on - strand at 741.764 kb on - strand at 741.768 kb on + strand at 741.769 kb on - strand at 741.769 kb on - strand at 741.922 kb on + strand at 741.922 kb on + strand at 741.922 kb on + strand at 741.922 kb on + strand at 741.923 kb on - strand at 741.923 kb on - strand at 741.994 kb on - strand at 742.003 kb on - strand at 742.003 kb on - strand at 742.015 kb on + strand at 742.015 kb on + strand at 742.190 kb on + strand at 742.308 kb on + strand at 742.308 kb on + strand at 742.308 kb on + strand at 742.308 kb on + strand at 742.308 kb on + strand at 742.308 kb on + strand at 742.309 kb on - strand at 742.605 kb on + strand at 742.605 kb on + strand at 742.605 kb on + strand at 742.606 kb on - strand at 742.708 kb on + strand at 742.709 kb on - strand at 742.766 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 738,857 + IAI47_03540 0.79 +0.2 738,857 + IAI47_03540 0.79 +0.1 738,878 - IAI47_03540 0.81 -0.4 738,905 + IAI47_03540 0.84 -0.9 738,925 + IAI47_03540 0.86 -0.7 738,926 - IAI47_03540 0.86 -0.6 738,926 - IAI47_03540 0.86 +0.5 738,942 + IAI47_03540 0.87 -0.7 738,942 + IAI47_03540 0.87 -1.2 738,942 + IAI47_03540 0.87 -0.5 738,942 + IAI47_03540 0.87 -0.2 738,942 + IAI47_03540 0.87 -1.2 738,942 + IAI47_03540 0.87 -1.8 738,942 + IAI47_03540 0.87 -1.2 738,943 - IAI47_03540 0.87 -0.5 738,957 + IAI47_03540 0.89 +0.2 738,957 + IAI47_03540 0.89 -1.2 738,957 + IAI47_03540 0.89 -0.3 738,957 + IAI47_03540 0.89 -0.1 738,957 + IAI47_03540 0.89 +0.2 738,957 + IAI47_03540 0.89 -0.1 738,958 - IAI47_03540 0.89 +3.7 738,958 - IAI47_03540 0.89 -0.7 738,958 - IAI47_03540 0.89 -0.1 738,958 - IAI47_03540 0.89 +0.9 738,958 - IAI47_03540 0.89 -0.8 738,958 - IAI47_03540 0.89 +0.5 738,958 - IAI47_03540 0.89 +0.3 739,026 + +2.5 739,102 + +0.1 739,103 - +0.2 739,117 + +0.3 739,118 - +0.3 739,118 - -0.8 739,191 + +0.6 739,191 + -0.5 739,191 + -0.7 739,191 + +0.3 739,192 - +1.9 739,192 - +0.7 739,192 - +0.3 739,215 + +0.2 739,256 - +0.2 739,331 - +2.7 739,348 - +0.7 739,348 - -1.0 739,427 - -0.8 739,482 - -2.2 739,542 + +0.3 739,542 + +0.3 739,543 - +0.9 739,557 - +1.3 739,559 + -1.2 739,559 + +0.0 739,560 - +0.7 739,560 - +0.3 739,616 - +0.9 739,628 - +0.3 739,628 - -0.1 739,628 - +1.1 739,698 + +0.3 739,698 + +0.6 739,699 - -2.5 739,699 - -1.5 739,699 - -0.9 739,723 + +2.3 739,724 - +0.7 739,792 + -1.7 739,801 + -0.7 739,801 + -0.3 739,922 + IAI47_03545 0.14 -1.2 739,922 + IAI47_03545 0.14 +0.7 739,923 - IAI47_03545 0.14 +0.2 739,923 - IAI47_03545 0.14 -0.8 739,935 + IAI47_03545 0.14 +0.1 739,935 + IAI47_03545 0.14 -1.2 739,935 + IAI47_03545 0.14 +0.9 739,935 + IAI47_03545 0.14 +0.7 739,935 + IAI47_03545 0.14 +0.6 739,936 - IAI47_03545 0.14 +0.1 739,936 - IAI47_03545 0.14 +0.3 739,967 + IAI47_03545 0.16 +2.2 739,967 + IAI47_03545 0.16 -0.8 739,968 - IAI47_03545 0.16 +0.1 739,968 - IAI47_03545 0.16 +0.2 739,968 - IAI47_03545 0.16 -0.1 740,027 - IAI47_03545 0.19 +0.5 740,027 - IAI47_03545 0.19 +0.0 740,027 - IAI47_03545 0.19 +1.2 740,027 - IAI47_03545 0.19 +0.1 740,054 + IAI47_03545 0.20 +0.7 740,054 + IAI47_03545 0.20 +1.1 740,055 - IAI47_03545 0.20 -0.7 740,064 - IAI47_03545 0.20 +1.8 740,089 + IAI47_03545 0.21 +0.3 740,089 + IAI47_03545 0.21 +0.8 740,089 + IAI47_03545 0.21 -0.9 740,089 + IAI47_03545 0.21 -0.2 740,089 + IAI47_03545 0.21 -0.0 740,090 - IAI47_03545 0.21 +0.5 740,090 - IAI47_03545 0.21 -1.0 740,090 - IAI47_03545 0.21 +0.0 740,090 - IAI47_03545 0.21 +0.9 740,090 - IAI47_03545 0.21 +0.3 740,090 - IAI47_03545 0.21 -1.1 740,090 - IAI47_03545 0.21 -0.0 740,159 + IAI47_03545 0.25 -1.1 740,159 + IAI47_03545 0.25 -0.9 740,159 + IAI47_03545 0.25 -1.2 740,159 + IAI47_03545 0.25 -0.1 740,159 + IAI47_03545 0.25 -0.9 740,160 - IAI47_03545 0.25 +0.3 740,160 - IAI47_03545 0.25 +0.6 740,160 - IAI47_03545 0.25 +1.3 740,160 - IAI47_03545 0.25 +0.3 740,160 - IAI47_03545 0.25 -1.8 740,160 - IAI47_03545 0.25 -1.0 740,160 - IAI47_03545 0.25 -1.5 740,160 - IAI47_03545 0.25 +1.7 740,160 - IAI47_03545 0.25 +0.2 740,192 + IAI47_03545 0.26 -0.0 740,193 - IAI47_03545 0.26 -1.7 740,204 - IAI47_03545 0.27 +1.6 740,221 + IAI47_03545 0.28 +0.3 740,221 + IAI47_03545 0.28 -0.1 740,224 + IAI47_03545 0.28 +1.3 740,224 + IAI47_03545 0.28 -0.5 740,224 + IAI47_03545 0.28 +0.2 740,224 + IAI47_03545 0.28 +0.9 740,224 + IAI47_03545 0.28 -1.7 740,224 + IAI47_03545 0.28 -0.8 740,225 - IAI47_03545 0.28 -0.7 740,229 + IAI47_03545 0.28 -1.7 740,229 + IAI47_03545 0.28 -0.2 740,293 + IAI47_03545 0.31 +1.3 740,293 + IAI47_03545 0.31 +0.3 740,293 + IAI47_03545 0.31 +0.9 740,293 + IAI47_03545 0.31 -0.8 740,293 + IAI47_03545 0.31 +0.9 740,294 - IAI47_03545 0.31 -0.2 740,294 - IAI47_03545 0.31 +1.3 740,294 - IAI47_03545 0.31 +0.8 740,294 - IAI47_03545 0.31 -0.2 740,294 - IAI47_03545 0.31 -0.3 740,337 - IAI47_03545 0.33 +0.3 740,353 + IAI47_03545 0.34 +0.3 740,353 + IAI47_03545 0.34 +0.2 740,354 - 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Or see this region's nucleotide sequence