Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03065 and IAI47_03070 are separated by 29 nucleotides IAI47_03070 and IAI47_03075 are separated by 108 nucleotides IAI47_03075 and IAI47_03080 are separated by 190 nucleotides
IAI47_03065: IAI47_03065 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 633,723 to 634,736
_03065
IAI47_03070: IAI47_03070 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 634,766 to 635,371
_03070
IAI47_03075: IAI47_03075 - bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase, at 635,480 to 635,839
_03075
IAI47_03080: IAI47_03080 - undecaprenyl-diphosphate phosphatase, at 636,030 to 636,848
_03080
Position (kb) 635
636 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 634.855 kb on + strand, within IAI47_03070 at 634.855 kb on + strand, within IAI47_03070 at 634.855 kb on + strand, within IAI47_03070 at 634.911 kb on + strand, within IAI47_03070 at 634.911 kb on + strand, within IAI47_03070 at 634.911 kb on + strand, within IAI47_03070 at 634.911 kb on + strand, within IAI47_03070 at 634.911 kb on + strand, within IAI47_03070 at 634.912 kb on - strand, within IAI47_03070 at 634.912 kb on - strand, within IAI47_03070 at 634.912 kb on - strand, within IAI47_03070 at 634.912 kb on - strand, within IAI47_03070 at 634.912 kb on - strand, within IAI47_03070 at 634.956 kb on + strand, within IAI47_03070 at 634.967 kb on + strand, within IAI47_03070 at 634.968 kb on - strand, within IAI47_03070 at 634.968 kb on - strand, within IAI47_03070 at 634.968 kb on - strand, within IAI47_03070 at 635.006 kb on + strand, within IAI47_03070 at 635.007 kb on - strand, within IAI47_03070 at 635.007 kb on - strand, within IAI47_03070 at 635.086 kb on - strand, within IAI47_03070 at 635.086 kb on - strand, within IAI47_03070 at 635.089 kb on + strand, within IAI47_03070 at 635.089 kb on + strand, within IAI47_03070 at 635.089 kb on + strand, within IAI47_03070 at 635.089 kb on + strand, within IAI47_03070 at 635.089 kb on + strand, within IAI47_03070 at 635.089 kb on + strand, within IAI47_03070 at 635.090 kb on - strand, within IAI47_03070 at 635.090 kb on - strand, within IAI47_03070 at 635.090 kb on - strand, within IAI47_03070 at 635.090 kb on - strand, within IAI47_03070 at 635.090 kb on - strand, within IAI47_03070 at 635.127 kb on + strand, within IAI47_03070 at 635.127 kb on + strand, within IAI47_03070 at 635.128 kb on - strand, within IAI47_03070 at 635.151 kb on + strand, within IAI47_03070 at 635.152 kb on - strand, within IAI47_03070 at 635.152 kb on - strand, within IAI47_03070 at 635.152 kb on - strand, within IAI47_03070 at 635.195 kb on + strand, within IAI47_03070 at 635.195 kb on + strand, within IAI47_03070 at 635.195 kb on + strand, within IAI47_03070 at 635.196 kb on - strand, within IAI47_03070 at 635.196 kb on - strand, within IAI47_03070 at 635.196 kb on - strand, within IAI47_03070 at 635.196 kb on - strand at 635.198 kb on + strand, within IAI47_03070 at 635.198 kb on + strand, within IAI47_03070 at 635.198 kb on + strand, within IAI47_03070 at 635.198 kb on + strand, within IAI47_03070 at 635.199 kb on - strand, within IAI47_03070 at 635.199 kb on - strand, within IAI47_03070 at 635.234 kb on + strand, within IAI47_03070 at 635.234 kb on + strand, within IAI47_03070 at 635.234 kb on + strand, within IAI47_03070 at 635.234 kb on + strand, within IAI47_03070 at 635.234 kb on + strand, within IAI47_03070 at 635.234 kb on + strand, within IAI47_03070 at 635.234 kb on + strand, within IAI47_03070 at 635.235 kb on - strand, within IAI47_03070 at 635.235 kb on - strand, within IAI47_03070 at 635.235 kb on - strand, within IAI47_03070 at 635.266 kb on - strand, within IAI47_03070 at 635.335 kb on - strand at 635.344 kb on + strand at 635.344 kb on + strand at 635.345 kb on - strand at 635.345 kb on - strand at 635.350 kb on + strand at 635.350 kb on + strand at 635.350 kb on + strand at 635.350 kb on + strand at 635.351 kb on - strand at 635.371 kb on + strand at 635.371 kb on + strand at 635.372 kb on - strand at 635.372 kb on - strand at 635.372 kb on - strand at 635.379 kb on + strand at 635.380 kb on - strand at 635.380 kb on - strand at 635.380 kb on - strand at 635.392 kb on - strand at 635.421 kb on + strand at 635.421 kb on + strand at 635.422 kb on - strand at 635.422 kb on - strand at 635.422 kb on - strand at 635.422 kb on - strand at 635.424 kb on + strand at 635.424 kb on + strand at 635.424 kb on + strand at 635.424 kb on + strand at 635.424 kb on + strand at 635.424 kb on + strand at 635.424 kb on + strand at 635.424 kb on + strand at 635.424 kb on + strand at 635.425 kb on - strand at 635.425 kb on - strand at 635.425 kb on - strand at 635.425 kb on - strand at 635.430 kb on + strand at 635.430 kb on + strand at 635.430 kb on + strand at 635.430 kb on + strand at 635.430 kb on + strand at 635.430 kb on + strand at 635.431 kb on - strand at 635.431 kb on - strand at 635.431 kb on - strand at 635.431 kb on - strand at 635.431 kb on - strand at 635.431 kb on - strand at 635.447 kb on + strand at 635.457 kb on - strand at 635.827 kb on + strand at 635.837 kb on + strand at 635.837 kb on + strand at 635.838 kb on - strand at 635.838 kb on - strand at 635.841 kb on + strand at 635.841 kb on + strand at 635.842 kb on - strand at 635.842 kb on - strand at 635.879 kb on + strand at 635.879 kb on + strand at 635.879 kb on + strand at 635.880 kb on - strand at 635.880 kb on - strand at 635.880 kb on - strand at 635.891 kb on + strand at 635.891 kb on + strand at 635.891 kb on + strand at 635.891 kb on + strand at 635.891 kb on + strand at 635.892 kb on - strand at 635.892 kb on - strand at 635.892 kb on - strand at 635.909 kb on + strand at 635.909 kb on + strand at 635.928 kb on + strand at 635.928 kb on + strand at 635.935 kb on + strand at 635.936 kb on - strand at 635.936 kb on - strand at 635.942 kb on + strand at 635.942 kb on + strand at 635.943 kb on - strand at 635.943 kb on - strand at 635.953 kb on + strand at 635.953 kb on + strand at 635.953 kb on + strand at 635.953 kb on + strand at 635.953 kb on + strand at 635.953 kb on + strand at 635.953 kb on + strand at 635.953 kb on + strand at 635.953 kb on + strand at 635.954 kb on - strand at 635.954 kb on - strand at 635.954 kb on - strand at 635.954 kb on - strand at 635.954 kb on - strand at 635.954 kb on - strand at 635.955 kb on + strand at 635.955 kb on + strand at 635.956 kb on - strand at 635.956 kb on - strand at 635.956 kb on - strand at 635.964 kb on - strand at 635.977 kb on - strand at 635.998 kb on + strand at 635.998 kb on + strand at 635.998 kb on + strand at 636.038 kb on + strand at 636.038 kb on + strand at 636.038 kb on + strand at 636.038 kb on + strand at 636.038 kb on + strand at 636.038 kb on + strand at 636.038 kb on + strand at 636.039 kb on - strand at 636.039 kb on - strand at 636.039 kb on - strand at 636.039 kb on - strand at 636.039 kb on - strand at 636.039 kb on - strand at 636.055 kb on + strand at 636.056 kb on - strand at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.125 kb on + strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.126 kb on - strand, within IAI47_03080 at 636.127 kb on + strand, within IAI47_03080 at 636.127 kb on + strand, within IAI47_03080 at 636.127 kb on + strand, within IAI47_03080 at 636.127 kb on + strand, within IAI47_03080 at 636.127 kb on + strand, within IAI47_03080 at 636.128 kb on - strand, within IAI47_03080 at 636.128 kb on - strand, within IAI47_03080 at 636.128 kb on - strand, within IAI47_03080 at 636.128 kb on - strand, within IAI47_03080 at 636.128 kb on - strand, within IAI47_03080 at 636.128 kb on - strand, within IAI47_03080 at 636.128 kb on - strand, within IAI47_03080 at 636.128 kb on - strand, within IAI47_03080 at 636.128 kb on - strand, within IAI47_03080 at 636.191 kb on - strand, within IAI47_03080 at 636.191 kb on - strand, within IAI47_03080 at 636.191 kb on - strand, within IAI47_03080 at 636.191 kb on - strand, within IAI47_03080 at 636.211 kb on + strand, within IAI47_03080 at 636.211 kb on + strand, within IAI47_03080 at 636.211 kb on + strand, within IAI47_03080 at 636.212 kb on - strand, within IAI47_03080 at 636.212 kb on - strand, within IAI47_03080 at 636.266 kb on + strand, within IAI47_03080 at 636.267 kb on - strand, within IAI47_03080 at 636.267 kb on - strand, within IAI47_03080 at 636.320 kb on + strand, within IAI47_03080 at 636.321 kb on - strand, within IAI47_03080 at 636.396 kb on + strand, within IAI47_03080 at 636.396 kb on + strand, within IAI47_03080 at 636.396 kb on + strand, within IAI47_03080 at 636.396 kb on + strand, within IAI47_03080 at 636.396 kb on + strand, within IAI47_03080 at 636.397 kb on - strand, within IAI47_03080 at 636.397 kb on - strand, within IAI47_03080 at 636.438 kb on + strand, within IAI47_03080 at 636.438 kb on + strand, within IAI47_03080 at 636.479 kb on + strand, within IAI47_03080 at 636.479 kb on + strand, within IAI47_03080 at 636.479 kb on + strand, within IAI47_03080 at 636.479 kb on + strand, within IAI47_03080 at 636.480 kb on - strand, within IAI47_03080 at 636.480 kb on - strand, within IAI47_03080 at 636.480 kb on - strand, within IAI47_03080 at 636.480 kb on - strand, within IAI47_03080 at 636.481 kb on - strand, within IAI47_03080 at 636.482 kb on + strand, within IAI47_03080 at 636.482 kb on + strand, within IAI47_03080 at 636.482 kb on + strand, within IAI47_03080 at 636.482 kb on + strand, within IAI47_03080 at 636.482 kb on + strand, within IAI47_03080 at 636.482 kb on + strand, within IAI47_03080 at 636.482 kb on + strand, within IAI47_03080 at 636.482 kb on + strand, within IAI47_03080 at 636.482 kb on + strand, within IAI47_03080 at 636.482 kb on + strand, within IAI47_03080 at 636.482 kb on + strand, within IAI47_03080 at 636.482 kb on + strand, within IAI47_03080 at 636.482 kb on + strand, within IAI47_03080 at 636.483 kb on - strand, within IAI47_03080 at 636.483 kb on - strand, within IAI47_03080 at 636.483 kb on - strand, within IAI47_03080 at 636.483 kb on - strand, within IAI47_03080 at 636.483 kb on - strand, within IAI47_03080 at 636.483 kb on - strand, within IAI47_03080 at 636.483 kb on - strand, within IAI47_03080 at 636.483 kb on - strand, within IAI47_03080 at 636.483 kb on - strand, within IAI47_03080 at 636.483 kb on - strand, within IAI47_03080 at 636.483 kb on - strand, within IAI47_03080 at 636.483 kb on - strand, within IAI47_03080 at 636.483 kb on - strand, within IAI47_03080 at 636.483 kb on - strand, within IAI47_03080 at 636.483 kb on - strand, within IAI47_03080 at 636.483 kb on - strand, within IAI47_03080 at 636.483 kb on - strand, within IAI47_03080 at 636.483 kb on - strand, within IAI47_03080 at 636.487 kb on - strand, within IAI47_03080 at 636.487 kb on - strand, within IAI47_03080 at 636.500 kb on + strand, within IAI47_03080 at 636.500 kb on + strand, within IAI47_03080 at 636.500 kb on + strand, within IAI47_03080 at 636.500 kb on + strand, within IAI47_03080 at 636.500 kb on + strand, within IAI47_03080 at 636.500 kb on + strand, within IAI47_03080 at 636.501 kb on - strand, within IAI47_03080 at 636.501 kb on - strand, within IAI47_03080 at 636.501 kb on - strand, within IAI47_03080 at 636.523 kb on + strand, within IAI47_03080 at 636.523 kb on + strand, within IAI47_03080 at 636.524 kb on - strand, within IAI47_03080 at 636.524 kb on - strand, within IAI47_03080 at 636.562 kb on + strand, within IAI47_03080 at 636.563 kb on - strand, within IAI47_03080 at 636.663 kb on + strand, within IAI47_03080 at 636.663 kb on + strand, within IAI47_03080 at 636.663 kb on + strand, within IAI47_03080 at 636.663 kb on + strand, within IAI47_03080 at 636.663 kb on + strand, within IAI47_03080 at 636.663 kb on + strand, within IAI47_03080 at 636.663 kb on + strand, within IAI47_03080 at 636.663 kb on + strand, within IAI47_03080 at 636.664 kb on - strand, within IAI47_03080 at 636.664 kb on - strand, within IAI47_03080 at 636.664 kb on - strand, within IAI47_03080 at 636.664 kb on - strand, within IAI47_03080 at 636.664 kb on - strand, within IAI47_03080 at 636.664 kb on - strand, within IAI47_03080 at 636.664 kb on - strand, within IAI47_03080 at 636.664 kb on - strand, within IAI47_03080 at 636.664 kb on - strand, within IAI47_03080 at 636.664 kb on - strand, within IAI47_03080 at 636.664 kb on - strand, within IAI47_03080 at 636.664 kb on - strand, within IAI47_03080 at 636.664 kb on - strand, within IAI47_03080 at 636.731 kb on + strand, within IAI47_03080 at 636.731 kb on + strand, within IAI47_03080 at 636.731 kb on + strand, within IAI47_03080 at 636.732 kb on - strand, within IAI47_03080 at 636.732 kb on - strand, within IAI47_03080 at 636.732 kb on - strand, within IAI47_03080 at 636.773 kb on + strand at 636.773 kb on + strand at 636.773 kb on + strand at 636.773 kb on + strand at 636.773 kb on + strand at 636.774 kb on - strand at 636.779 kb on + strand at 636.779 kb on + strand at 636.779 kb on + strand at 636.779 kb on + strand at 636.779 kb on + strand at 636.779 kb on + strand at 636.780 kb on - strand at 636.812 kb on + strand at 636.831 kb on + strand at 636.831 kb on + strand at 636.831 kb on + strand at 636.832 kb on - strand at 636.832 kb on - strand at 636.832 kb on - strand at 636.832 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 634,855 + IAI47_03070 0.15 -0.9 634,855 + IAI47_03070 0.15 +0.3 634,855 + IAI47_03070 0.15 -1.1 634,911 + IAI47_03070 0.24 -1.1 634,911 + IAI47_03070 0.24 +1.9 634,911 + IAI47_03070 0.24 +0.7 634,911 + IAI47_03070 0.24 -1.2 634,911 + IAI47_03070 0.24 -0.0 634,912 - IAI47_03070 0.24 +1.2 634,912 - IAI47_03070 0.24 -0.8 634,912 - IAI47_03070 0.24 -1.1 634,912 - IAI47_03070 0.24 -0.8 634,912 - IAI47_03070 0.24 +0.3 634,956 + IAI47_03070 0.31 -1.0 634,967 + IAI47_03070 0.33 -0.7 634,968 - IAI47_03070 0.33 +0.3 634,968 - IAI47_03070 0.33 -0.4 634,968 - IAI47_03070 0.33 -0.3 635,006 + IAI47_03070 0.40 -1.1 635,007 - IAI47_03070 0.40 -0.2 635,007 - IAI47_03070 0.40 -0.8 635,086 - IAI47_03070 0.53 -0.7 635,086 - IAI47_03070 0.53 -1.2 635,089 + IAI47_03070 0.53 -1.3 635,089 + IAI47_03070 0.53 +0.8 635,089 + IAI47_03070 0.53 +0.1 635,089 + IAI47_03070 0.53 -1.2 635,089 + IAI47_03070 0.53 -0.5 635,089 + IAI47_03070 0.53 +0.0 635,090 - IAI47_03070 0.53 +1.3 635,090 - IAI47_03070 0.53 +0.3 635,090 - IAI47_03070 0.53 -0.5 635,090 - IAI47_03070 0.53 +1.3 635,090 - IAI47_03070 0.53 -1.2 635,127 + IAI47_03070 0.60 +0.4 635,127 + IAI47_03070 0.60 -0.7 635,128 - IAI47_03070 0.60 +0.3 635,151 + IAI47_03070 0.64 -1.2 635,152 - IAI47_03070 0.64 +0.1 635,152 - IAI47_03070 0.64 -0.0 635,152 - IAI47_03070 0.64 -2.0 635,195 + IAI47_03070 0.71 -0.6 635,195 + IAI47_03070 0.71 +1.1 635,195 + IAI47_03070 0.71 +0.6 635,196 - IAI47_03070 0.71 +0.8 635,196 - IAI47_03070 0.71 +1.3 635,196 - IAI47_03070 0.71 -0.2 635,196 - +0.3 635,198 + IAI47_03070 0.71 +0.5 635,198 + IAI47_03070 0.71 -0.2 635,198 + IAI47_03070 0.71 -1.2 635,198 + IAI47_03070 0.71 -1.5 635,199 - IAI47_03070 0.71 -1.2 635,199 - IAI47_03070 0.71 -1.0 635,234 + IAI47_03070 0.77 -2.1 635,234 + IAI47_03070 0.77 +1.3 635,234 + IAI47_03070 0.77 +0.7 635,234 + IAI47_03070 0.77 -1.0 635,234 + IAI47_03070 0.77 -0.3 635,234 + IAI47_03070 0.77 -0.9 635,234 + IAI47_03070 0.77 -0.5 635,235 - IAI47_03070 0.77 +0.1 635,235 - IAI47_03070 0.77 -2.0 635,235 - IAI47_03070 0.77 +0.0 635,266 - IAI47_03070 0.83 -0.4 635,335 - -0.7 635,344 + +0.6 635,344 + +4.6 635,345 - -0.1 635,345 - -0.2 635,350 + +0.2 635,350 + -0.3 635,350 + -0.1 635,350 + -1.1 635,351 - -0.4 635,371 + -2.2 635,371 + -0.2 635,372 - -0.7 635,372 - +0.9 635,372 - -0.2 635,379 + +0.3 635,380 - +0.3 635,380 - -0.4 635,380 - -0.1 635,392 - +0.1 635,421 + -0.2 635,421 + -0.3 635,422 - +0.8 635,422 - -0.8 635,422 - +1.1 635,422 - +1.3 635,424 + +0.3 635,424 + -0.2 635,424 + -0.2 635,424 + +0.9 635,424 + +0.6 635,424 + +0.3 635,424 + -0.6 635,424 + +2.1 635,424 + +1.0 635,425 - +0.0 635,425 - -0.1 635,425 - -1.1 635,425 - +0.1 635,430 + +0.1 635,430 + -0.5 635,430 + -0.4 635,430 + -0.2 635,430 + -0.2 635,430 + +2.3 635,431 - -0.1 635,431 - -0.4 635,431 - -2.5 635,431 - -2.0 635,431 - +0.2 635,431 - +0.5 635,447 + +0.3 635,457 - +1.3 635,827 + +0.3 635,837 + -0.2 635,837 + +0.5 635,838 - +1.6 635,838 - -1.2 635,841 + -0.7 635,841 + -0.6 635,842 - +0.3 635,842 - +1.9 635,879 + +1.2 635,879 + +0.3 635,879 + -1.7 635,880 - -0.0 635,880 - +1.1 635,880 - -0.1 635,891 + -0.2 635,891 + +0.3 635,891 + -1.4 635,891 + -0.4 635,891 + +0.3 635,892 - +0.9 635,892 - -1.7 635,892 - +0.9 635,909 + +0.7 635,909 + +0.1 635,928 + +1.3 635,928 + -0.1 635,935 + -0.9 635,936 - -0.7 635,936 - -0.3 635,942 + -0.2 635,942 + +1.1 635,943 - +0.1 635,943 - +0.3 635,953 + -0.4 635,953 + -0.7 635,953 + +0.1 635,953 + +0.9 635,953 + +1.6 635,953 + +0.3 635,953 + +2.1 635,953 + -0.6 635,953 + -0.4 635,954 - -0.9 635,954 - -0.4 635,954 - -0.7 635,954 - -0.3 635,954 - +0.9 635,954 - +1.2 635,955 + -0.9 635,955 + +0.7 635,956 - +1.8 635,956 - -0.0 635,956 - -1.2 635,964 - -0.6 635,977 - -0.2 635,998 + +0.3 635,998 + -1.2 635,998 + +0.1 636,038 + +0.8 636,038 + -0.4 636,038 + -2.2 636,038 + +0.0 636,038 + -0.9 636,038 + -0.6 636,038 + +0.2 636,039 - +0.3 636,039 - -0.7 636,039 - -1.0 636,039 - +0.9 636,039 - +0.3 636,039 - +0.9 636,055 + -0.4 636,056 - -0.5 636,125 + IAI47_03080 0.12 -0.7 636,125 + IAI47_03080 0.12 -1.5 636,125 + IAI47_03080 0.12 -0.9 636,125 + IAI47_03080 0.12 -0.8 636,125 + IAI47_03080 0.12 -0.7 636,125 + IAI47_03080 0.12 -0.7 636,125 + IAI47_03080 0.12 +0.8 636,125 + IAI47_03080 0.12 -0.5 636,125 + IAI47_03080 0.12 +0.1 636,125 + IAI47_03080 0.12 -1.5 636,125 + IAI47_03080 0.12 +1.2 636,125 + IAI47_03080 0.12 +0.6 636,125 + IAI47_03080 0.12 -0.9 636,125 + IAI47_03080 0.12 -0.2 636,126 - 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Or see this region's nucleotide sequence