Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02905 and IAI47_02910 are separated by 399 nucleotides IAI47_02910 and IAI47_02915 are separated by 2 nucleotides
IAI47_02905: IAI47_02905 - MFS transporter, at 595,916 to 597,220
_02905
IAI47_02910: IAI47_02910 - glucuronate isomerase, at 597,620 to 599,035
_02910
IAI47_02915: IAI47_02915 - tagaturonate reductase, at 599,038 to 600,486
_02915
Position (kb) 597
598
599
600 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 596.620 kb on - strand, within IAI47_02905 at 596.620 kb on - strand, within IAI47_02905 at 596.620 kb on - strand, within IAI47_02905 at 596.620 kb on - strand, within IAI47_02905 at 596.667 kb on + strand, within IAI47_02905 at 596.667 kb on + strand, within IAI47_02905 at 596.719 kb on + strand, within IAI47_02905 at 596.719 kb on + strand, within IAI47_02905 at 596.719 kb on + strand, within IAI47_02905 at 596.719 kb on + strand, within IAI47_02905 at 596.719 kb on + strand, within IAI47_02905 at 596.719 kb on + strand, within IAI47_02905 at 596.719 kb on + strand, within IAI47_02905 at 596.720 kb on - strand, within IAI47_02905 at 596.720 kb on - strand, within IAI47_02905 at 596.720 kb on - strand, within IAI47_02905 at 596.720 kb on - strand, within IAI47_02905 at 596.720 kb on - strand, within IAI47_02905 at 596.789 kb on - strand, within IAI47_02905 at 596.789 kb on - strand, within IAI47_02905 at 596.789 kb on - strand, within IAI47_02905 at 596.789 kb on - strand, within IAI47_02905 at 596.804 kb on - strand, within IAI47_02905 at 596.804 kb on - strand, within IAI47_02905 at 596.808 kb on + strand, within IAI47_02905 at 596.808 kb on + strand, within IAI47_02905 at 596.809 kb on - strand, within IAI47_02905 at 596.809 kb on - strand, within IAI47_02905 at 596.813 kb on + strand, within IAI47_02905 at 596.814 kb on - strand, within IAI47_02905 at 596.851 kb on + strand, within IAI47_02905 at 596.851 kb on + strand, within IAI47_02905 at 596.851 kb on + strand, within IAI47_02905 at 596.851 kb on + strand, within IAI47_02905 at 597.021 kb on + strand, within IAI47_02905 at 597.022 kb on - strand, within IAI47_02905 at 597.022 kb on - strand, within IAI47_02905 at 597.046 kb on + strand, within IAI47_02905 at 597.046 kb on + strand, within IAI47_02905 at 597.046 kb on + strand, within IAI47_02905 at 597.046 kb on + strand, within IAI47_02905 at 597.046 kb on + strand, within IAI47_02905 at 597.047 kb on - strand, within IAI47_02905 at 597.047 kb on - strand, within IAI47_02905 at 597.047 kb on - strand, within IAI47_02905 at 597.047 kb on - strand, within IAI47_02905 at 597.047 kb on - strand, within IAI47_02905 at 597.048 kb on + strand, within IAI47_02905 at 597.048 kb on + strand, within IAI47_02905 at 597.048 kb on + strand, within IAI47_02905 at 597.048 kb on + strand, within IAI47_02905 at 597.049 kb on - strand, within IAI47_02905 at 597.049 kb on - strand, within IAI47_02905 at 597.049 kb on - strand, within IAI47_02905 at 597.061 kb on - strand, within IAI47_02905 at 597.061 kb on - strand, within IAI47_02905 at 597.075 kb on + strand, within IAI47_02905 at 597.075 kb on + strand, within IAI47_02905 at 597.075 kb on + strand, within IAI47_02905 at 597.075 kb on + strand, within IAI47_02905 at 597.075 kb on + strand, within IAI47_02905 at 597.075 kb on + strand, within IAI47_02905 at 597.075 kb on + strand, within IAI47_02905 at 597.075 kb on + strand, within IAI47_02905 at 597.075 kb on + strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.076 kb on - strand, within IAI47_02905 at 597.081 kb on + strand, within IAI47_02905 at 597.081 kb on + strand, within IAI47_02905 at 597.081 kb on + strand, within IAI47_02905 at 597.082 kb on - strand, within IAI47_02905 at 597.082 kb on - strand, within IAI47_02905 at 597.082 kb on - strand, within IAI47_02905 at 597.082 kb on - strand, within IAI47_02905 at 597.091 kb on + strand at 597.091 kb on + strand at 597.091 kb on + strand at 597.092 kb on - strand at 597.096 kb on - strand at 597.097 kb on + strand at 597.097 kb on + strand at 597.097 kb on + strand at 597.097 kb on + strand at 597.098 kb on - strand at 597.098 kb on - strand at 597.098 kb on - strand at 597.140 kb on - strand at 597.140 kb on - strand at 597.140 kb on - strand at 597.140 kb on - strand at 597.143 kb on - strand at 597.143 kb on - strand at 597.143 kb on - strand at 597.154 kb on - strand at 597.154 kb on - strand at 597.158 kb on + strand at 597.158 kb on + strand at 597.158 kb on + strand at 597.158 kb on + strand at 597.158 kb on + strand at 597.159 kb on - strand at 597.159 kb on - strand at 597.159 kb on - strand at 597.159 kb on - strand at 597.159 kb on - strand at 597.159 kb on - strand at 597.159 kb on - strand at 597.162 kb on - strand at 597.192 kb on + strand at 597.192 kb on + strand at 597.193 kb on - strand at 597.193 kb on - strand at 597.242 kb on + strand at 597.264 kb on + strand at 597.264 kb on + strand at 597.264 kb on + strand at 597.264 kb on + strand at 597.265 kb on - strand at 597.265 kb on - strand at 597.335 kb on + strand at 597.335 kb on + strand at 597.335 kb on + strand at 597.335 kb on + strand at 597.335 kb on + strand at 597.335 kb on + strand at 597.335 kb on + strand at 597.335 kb on + strand at 597.335 kb on + strand at 597.336 kb on - strand at 597.336 kb on - strand at 597.336 kb on - strand at 597.372 kb on - strand at 597.461 kb on + strand at 597.461 kb on + strand at 597.462 kb on - strand at 597.462 kb on - strand at 597.475 kb on + strand at 597.475 kb on + strand at 597.476 kb on - strand at 597.603 kb on + strand at 597.604 kb on - strand at 597.604 kb on - strand at 597.604 kb on - strand at 597.619 kb on + strand at 597.619 kb on + strand at 597.619 kb on + strand at 597.619 kb on + strand at 597.619 kb on + strand at 597.619 kb on + strand at 597.619 kb on + strand at 597.619 kb on + strand at 597.619 kb on + strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.620 kb on - strand at 597.655 kb on + strand at 597.656 kb on - strand at 597.677 kb on + strand at 597.677 kb on + strand at 597.677 kb on + strand at 597.677 kb on + strand at 597.677 kb on + strand at 597.678 kb on - strand at 597.686 kb on + strand at 597.726 kb on + strand at 597.727 kb on - strand at 597.727 kb on - strand at 597.727 kb on - strand at 597.753 kb on - strand at 597.770 kb on + strand, within IAI47_02910 at 597.770 kb on + strand, within IAI47_02910 at 597.770 kb on + strand, within IAI47_02910 at 597.770 kb on + strand, within IAI47_02910 at 597.770 kb on + strand, within IAI47_02910 at 597.770 kb on + strand, within IAI47_02910 at 597.770 kb on + strand, within IAI47_02910 at 597.771 kb on - strand, within IAI47_02910 at 597.771 kb on - strand, within IAI47_02910 at 597.771 kb on - strand, within IAI47_02910 at 597.771 kb on - strand, within IAI47_02910 at 597.797 kb on + strand, within IAI47_02910 at 597.797 kb on + strand, within IAI47_02910 at 597.798 kb on - strand, within IAI47_02910 at 597.798 kb on - strand, within IAI47_02910 at 597.798 kb on - strand, within IAI47_02910 at 597.844 kb on + strand, within IAI47_02910 at 597.889 kb on + strand, within IAI47_02910 at 597.890 kb on - strand, within IAI47_02910 at 597.920 kb on + strand, within IAI47_02910 at 597.921 kb on - strand, within IAI47_02910 at 597.921 kb on - strand, within IAI47_02910 at 597.921 kb on - strand, within IAI47_02910 at 597.942 kb on + strand, within IAI47_02910 at 597.942 kb on + strand, within IAI47_02910 at 597.943 kb on - strand, within IAI47_02910 at 597.943 kb on - strand, within IAI47_02910 at 597.943 kb on - strand, within IAI47_02910 at 597.943 kb on - strand, within IAI47_02910 at 598.033 kb on + strand, within IAI47_02910 at 598.033 kb on + strand, within IAI47_02910 at 598.034 kb on - strand, within IAI47_02910 at 598.034 kb on - strand, within IAI47_02910 at 598.034 kb on - strand, within IAI47_02910 at 598.153 kb on + strand, within IAI47_02910 at 598.189 kb on + strand, within IAI47_02910 at 598.189 kb on + strand, within IAI47_02910 at 598.189 kb on + strand, within IAI47_02910 at 598.189 kb on + strand, within IAI47_02910 at 598.189 kb on + strand, within IAI47_02910 at 598.190 kb on - strand, within IAI47_02910 at 598.190 kb on - strand, within IAI47_02910 at 598.190 kb on - strand, within IAI47_02910 at 598.190 kb on - strand, within IAI47_02910 at 598.192 kb on + strand, within IAI47_02910 at 598.286 kb on + strand, within IAI47_02910 at 598.287 kb on - strand, within IAI47_02910 at 598.287 kb on - strand, within IAI47_02910 at 598.287 kb on - strand, within IAI47_02910 at 598.287 kb on - strand, within IAI47_02910 at 598.287 kb on - strand, within IAI47_02910 at 598.287 kb on - strand, within IAI47_02910 at 598.322 kb on - strand, within IAI47_02910 at 598.355 kb on + strand, within IAI47_02910 at 598.356 kb on - strand, within IAI47_02910 at 598.356 kb on - strand, within IAI47_02910 at 598.411 kb on + strand, within IAI47_02910 at 598.411 kb on + strand, within IAI47_02910 at 598.412 kb on - strand, within IAI47_02910 at 598.455 kb on + strand, within IAI47_02910 at 598.456 kb on - strand, within IAI47_02910 at 598.456 kb on - strand, within IAI47_02910 at 598.456 kb on - strand, within IAI47_02910 at 598.478 kb on + strand, within IAI47_02910 at 598.478 kb on + strand, within IAI47_02910 at 598.479 kb on - strand, within IAI47_02910 at 598.479 kb on - strand, within IAI47_02910 at 598.479 kb on - strand, within IAI47_02910 at 598.479 kb on - strand, within IAI47_02910 at 598.479 kb on - strand, within IAI47_02910 at 598.498 kb on - strand, within IAI47_02910 at 598.498 kb on - strand, within IAI47_02910 at 598.505 kb on + strand, within IAI47_02910 at 598.505 kb on + strand, within IAI47_02910 at 598.506 kb on - strand, within IAI47_02910 at 598.545 kb on - strand, within IAI47_02910 at 598.545 kb on - strand, within IAI47_02910 at 598.636 kb on + strand, within IAI47_02910 at 598.636 kb on + strand, within IAI47_02910 at 598.636 kb on + strand, within IAI47_02910 at 598.637 kb on - strand, within IAI47_02910 at 598.637 kb on - strand, within IAI47_02910 at 598.637 kb on - strand, within IAI47_02910 at 598.637 kb on - strand, within IAI47_02910 at 598.637 kb on - strand, within IAI47_02910 at 598.637 kb on - strand, within IAI47_02910 at 598.639 kb on + strand, within IAI47_02910 at 598.639 kb on + strand, within IAI47_02910 at 598.640 kb on - strand, within IAI47_02910 at 598.664 kb on + strand, within IAI47_02910 at 598.664 kb on + strand, within IAI47_02910 at 598.664 kb on + strand, within IAI47_02910 at 598.664 kb on + strand, within IAI47_02910 at 598.665 kb on - strand, within IAI47_02910 at 598.692 kb on + strand, within IAI47_02910 at 598.692 kb on + strand, within IAI47_02910 at 598.874 kb on + strand, within IAI47_02910 at 598.874 kb on + strand, within IAI47_02910 at 598.874 kb on + strand, within IAI47_02910 at 598.875 kb on - strand, within IAI47_02910 at 598.875 kb on - strand, within IAI47_02910 at 598.875 kb on - strand, within IAI47_02910 at 598.875 kb on - strand, within IAI47_02910 at 598.875 kb on - strand, within IAI47_02910 at 598.875 kb on - strand, within IAI47_02910 at 598.875 kb on - strand, within IAI47_02910 at 598.875 kb on - strand, within IAI47_02910 at 598.875 kb on - strand, within IAI47_02910 at 598.889 kb on + strand, within IAI47_02910 at 598.889 kb on + strand, within IAI47_02910 at 598.889 kb on + strand, within IAI47_02910 at 598.890 kb on - strand, within IAI47_02910 at 598.965 kb on + strand at 598.965 kb on + strand at 599.009 kb on + strand at 599.048 kb on + strand at 599.049 kb on - strand at 599.109 kb on + strand at 599.109 kb on + strand at 599.109 kb on + strand at 599.109 kb on + strand at 599.110 kb on - strand at 599.110 kb on - strand at 599.110 kb on - strand at 599.110 kb on - strand at 599.110 kb on - strand at 599.127 kb on + strand at 599.242 kb on + strand, within IAI47_02915 at 599.242 kb on + strand, within IAI47_02915 at 599.243 kb on - strand, within IAI47_02915 at 599.243 kb on - strand, within IAI47_02915 at 599.352 kb on + strand, within IAI47_02915 at 599.497 kb on + strand, within IAI47_02915 at 599.498 kb on - strand, within IAI47_02915 at 599.498 kb on - strand, within IAI47_02915 at 599.563 kb on - strand, within IAI47_02915 at 599.563 kb on - strand, within IAI47_02915 at 599.596 kb on + strand, within IAI47_02915 at 599.628 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.659 kb on + strand, within IAI47_02915 at 599.660 kb on - strand, within IAI47_02915 at 599.660 kb on - strand, within IAI47_02915 at 599.660 kb on - strand, within IAI47_02915 at 599.660 kb on - strand, within IAI47_02915 at 599.660 kb on - strand, within IAI47_02915 at 599.660 kb on - strand, within IAI47_02915 at 599.660 kb on - strand, within IAI47_02915 at 599.660 kb on - strand, within IAI47_02915 at 599.661 kb on + strand, within IAI47_02915 at 599.662 kb on - strand, within IAI47_02915 at 599.662 kb on - strand, within IAI47_02915 at 599.731 kb on + strand, within IAI47_02915 at 599.731 kb on + strand, within IAI47_02915 at 599.732 kb on - strand, within IAI47_02915 at 599.732 kb on - strand, within IAI47_02915 at 599.744 kb on - strand, within IAI47_02915 at 599.764 kb on + strand, within IAI47_02915 at 599.764 kb on + strand, within IAI47_02915 at 599.764 kb on + strand, within IAI47_02915 at 599.764 kb on + strand, within IAI47_02915 at 599.764 kb on + strand, within IAI47_02915 at 599.764 kb on + strand, within IAI47_02915 at 599.765 kb on - strand, within IAI47_02915 at 599.767 kb on + strand, within IAI47_02915 at 599.767 kb on + strand, within IAI47_02915 at 599.767 kb on + strand, within IAI47_02915 at 599.768 kb on - strand, within IAI47_02915 at 599.863 kb on + strand, within IAI47_02915 at 599.863 kb on + strand, within IAI47_02915 at 599.864 kb on - strand, within IAI47_02915 at 599.864 kb on - strand, within IAI47_02915 at 599.864 kb on - strand, within IAI47_02915 at 599.866 kb on - strand, within IAI47_02915 at 599.866 kb on - strand, within IAI47_02915 at 599.866 kb on - strand, within IAI47_02915 at 599.866 kb on - strand, within IAI47_02915 at 599.866 kb on - strand, within IAI47_02915 at 599.901 kb on + strand, within IAI47_02915 at 599.901 kb on + strand, within IAI47_02915 at 599.902 kb on - strand, within IAI47_02915 at 599.988 kb on + strand, within IAI47_02915
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 596,620 - IAI47_02905 0.54 -0.2 596,620 - IAI47_02905 0.54 -0.0 596,620 - IAI47_02905 0.54 +0.0 596,620 - IAI47_02905 0.54 -2.0 596,667 + IAI47_02905 0.58 -0.3 596,667 + IAI47_02905 0.58 +1.7 596,719 + IAI47_02905 0.62 -1.5 596,719 + IAI47_02905 0.62 +0.0 596,719 + IAI47_02905 0.62 -1.0 596,719 + IAI47_02905 0.62 -0.9 596,719 + IAI47_02905 0.62 -1.3 596,719 + IAI47_02905 0.62 -0.7 596,719 + IAI47_02905 0.62 +0.3 596,720 - IAI47_02905 0.62 +1.7 596,720 - IAI47_02905 0.62 -2.9 596,720 - IAI47_02905 0.62 +1.3 596,720 - IAI47_02905 0.62 +0.3 596,720 - IAI47_02905 0.62 -0.7 596,789 - IAI47_02905 0.67 +0.3 596,789 - IAI47_02905 0.67 +0.0 596,789 - IAI47_02905 0.67 -0.7 596,789 - IAI47_02905 0.67 -1.9 596,804 - IAI47_02905 0.68 +1.1 596,804 - IAI47_02905 0.68 +1.2 596,808 + IAI47_02905 0.68 -0.1 596,808 + IAI47_02905 0.68 +0.1 596,809 - IAI47_02905 0.68 +0.2 596,809 - IAI47_02905 0.68 -0.3 596,813 + IAI47_02905 0.69 -0.1 596,814 - IAI47_02905 0.69 -0.5 596,851 + IAI47_02905 0.72 -0.4 596,851 + IAI47_02905 0.72 +1.1 596,851 + IAI47_02905 0.72 +0.7 596,851 + IAI47_02905 0.72 +1.1 597,021 + IAI47_02905 0.85 +0.1 597,022 - IAI47_02905 0.85 -0.3 597,022 - IAI47_02905 0.85 +0.8 597,046 + IAI47_02905 0.87 +1.2 597,046 + IAI47_02905 0.87 +1.3 597,046 + IAI47_02905 0.87 +0.5 597,046 + IAI47_02905 0.87 +2.2 597,046 + IAI47_02905 0.87 -0.4 597,047 - IAI47_02905 0.87 +0.3 597,047 - IAI47_02905 0.87 +0.4 597,047 - IAI47_02905 0.87 +0.3 597,047 - IAI47_02905 0.87 +0.9 597,047 - IAI47_02905 0.87 -0.7 597,048 + IAI47_02905 0.87 -0.5 597,048 + IAI47_02905 0.87 -0.3 597,048 + IAI47_02905 0.87 +1.3 597,048 + IAI47_02905 0.87 -0.3 597,049 - IAI47_02905 0.87 +1.3 597,049 - IAI47_02905 0.87 +0.7 597,049 - IAI47_02905 0.87 -0.1 597,061 - IAI47_02905 0.88 +2.3 597,061 - IAI47_02905 0.88 -1.5 597,075 + IAI47_02905 0.89 -0.4 597,075 + IAI47_02905 0.89 +0.5 597,075 + IAI47_02905 0.89 -0.2 597,075 + IAI47_02905 0.89 -1.5 597,075 + IAI47_02905 0.89 +1.3 597,075 + IAI47_02905 0.89 +0.7 597,075 + IAI47_02905 0.89 +1.3 597,075 + IAI47_02905 0.89 -0.2 597,075 + IAI47_02905 0.89 -0.7 597,076 - IAI47_02905 0.89 +0.2 597,076 - IAI47_02905 0.89 -0.7 597,076 - IAI47_02905 0.89 +0.0 597,076 - IAI47_02905 0.89 +0.9 597,076 - IAI47_02905 0.89 +0.7 597,076 - IAI47_02905 0.89 +1.6 597,076 - IAI47_02905 0.89 -0.0 597,076 - IAI47_02905 0.89 +0.9 597,076 - IAI47_02905 0.89 -0.0 597,076 - IAI47_02905 0.89 +0.1 597,076 - IAI47_02905 0.89 -0.7 597,076 - IAI47_02905 0.89 -2.3 597,076 - IAI47_02905 0.89 -0.3 597,076 - IAI47_02905 0.89 +0.2 597,076 - IAI47_02905 0.89 -0.3 597,081 + IAI47_02905 0.89 +0.3 597,081 + IAI47_02905 0.89 -0.4 597,081 + IAI47_02905 0.89 +0.8 597,082 - IAI47_02905 0.89 -0.4 597,082 - IAI47_02905 0.89 +0.1 597,082 - IAI47_02905 0.89 -0.3 597,082 - IAI47_02905 0.89 +0.3 597,091 + -0.8 597,091 + +0.5 597,091 + -1.2 597,092 - -0.1 597,096 - +0.1 597,097 + +0.3 597,097 + +0.7 597,097 + -0.1 597,097 + -0.3 597,098 - +0.7 597,098 - +0.0 597,098 - +1.3 597,140 - -0.7 597,140 - -0.9 597,140 - +0.1 597,140 - +0.5 597,143 - -0.1 597,143 - -0.1 597,143 - +2.3 597,154 - -1.6 597,154 - 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Or see this region's nucleotide sequence