Strain Fitness in Pantoea sp. MT58 around IAI47_02285

Experiment: Ying_Others16 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_02280 and IAI47_02285 are separated by 49 nucleotidesIAI47_02285 and IAI47_02290 are separated by 20 nucleotidesIAI47_02290 and IAI47_02295 are separated by 115 nucleotides IAI47_02280: IAI47_02280 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 472,759 to 474,060 _02280 IAI47_02285: IAI47_02285 - methionyl-tRNA formyltransferase, at 474,110 to 475,054 _02285 IAI47_02290: IAI47_02290 - peptide deformylase, at 475,075 to 475,587 _02290 IAI47_02295: IAI47_02295 - DNA-protecting protein DprA, at 475,703 to 476,827 _02295 Position (kb) 474 475 476Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 473.163 kb on + strand, within IAI47_02280at 473.164 kb on - strand, within IAI47_02280at 473.227 kb on + strand, within IAI47_02280at 473.227 kb on + strand, within IAI47_02280at 473.227 kb on + strand, within IAI47_02280at 473.228 kb on - strand, within IAI47_02280at 473.228 kb on - strand, within IAI47_02280at 473.271 kb on + strand, within IAI47_02280at 473.272 kb on - strand, within IAI47_02280at 473.272 kb on - strand, within IAI47_02280at 473.272 kb on - strand, within IAI47_02280at 473.284 kb on - strand, within IAI47_02280at 473.284 kb on - strand, within IAI47_02280at 473.302 kb on + strand, within IAI47_02280at 473.302 kb on + strand, within IAI47_02280at 473.302 kb on + strand, within IAI47_02280at 473.302 kb on + strand, within IAI47_02280at 473.302 kb on + strand, within IAI47_02280at 473.302 kb on + strand, within IAI47_02280at 473.302 kb on + strand, within IAI47_02280at 473.303 kb on - strand, within IAI47_02280at 473.303 kb on - strand, within IAI47_02280at 473.303 kb on - strand, within IAI47_02280at 473.303 kb on - strand, within IAI47_02280at 473.303 kb on - strand, within IAI47_02280at 473.303 kb on - strand, within IAI47_02280at 473.303 kb on - strand, within IAI47_02280at 473.303 kb on - strand, within IAI47_02280at 473.401 kb on + strand, within IAI47_02280at 473.402 kb on - strand, within IAI47_02280at 473.402 kb on - strand, within IAI47_02280at 473.402 kb on - strand, within IAI47_02280at 473.612 kb on - strand, within IAI47_02280at 473.634 kb on - strand, within IAI47_02280at 473.696 kb on - strand, within IAI47_02280at 473.698 kb on + strand, within IAI47_02280at 473.698 kb on + strand, within IAI47_02280at 473.698 kb on + strand, within IAI47_02280at 473.698 kb on + strand, within IAI47_02280at 473.698 kb on + strand, within IAI47_02280at 473.698 kb on + strand, within IAI47_02280at 473.698 kb on + strand, within IAI47_02280at 473.698 kb on + strand, within IAI47_02280at 473.699 kb on - strand, within IAI47_02280at 473.699 kb on - strand, within IAI47_02280at 473.699 kb on - strand, within IAI47_02280at 473.699 kb on - strand, within IAI47_02280at 473.707 kb on + strand, within IAI47_02280at 473.707 kb on + strand, within IAI47_02280at 473.708 kb on - strand, within IAI47_02280at 473.708 kb on - strand, within IAI47_02280at 473.708 kb on - strand, within IAI47_02280at 473.708 kb on - strand, within IAI47_02280at 473.708 kb on - strand, within IAI47_02280at 473.708 kb on - strand, within IAI47_02280at 473.710 kb on + strand, within IAI47_02280at 473.710 kb on + strand, within IAI47_02280at 473.711 kb on - strand, within IAI47_02280at 473.711 kb on - strand, within IAI47_02280at 473.711 kb on - strand, within IAI47_02280at 473.790 kb on + strand, within IAI47_02280at 473.790 kb on + strand, within IAI47_02280at 473.790 kb on + strand, within IAI47_02280at 473.791 kb on - strand, within IAI47_02280at 473.791 kb on - strand, within IAI47_02280at 473.791 kb on - strand, within IAI47_02280at 473.791 kb on - strand, within IAI47_02280at 473.791 kb on - strand, within IAI47_02280at 473.791 kb on - strand, within IAI47_02280at 473.791 kb on - strand, within IAI47_02280at 473.793 kb on - strand, within IAI47_02280at 473.793 kb on - strand, within IAI47_02280at 473.793 kb on - strand, within IAI47_02280at 473.793 kb on - strand, within IAI47_02280at 473.805 kb on - strand, within IAI47_02280at 473.825 kb on + strand, within IAI47_02280at 473.825 kb on + strand, within IAI47_02280at 473.826 kb on - strand, within IAI47_02280at 473.826 kb on - strand, within IAI47_02280at 473.845 kb on - strand, within IAI47_02280at 473.872 kb on - strand, within IAI47_02280at 473.872 kb on - strand, within IAI47_02280at 473.896 kb on + strand, within IAI47_02280at 473.896 kb on + strand, within IAI47_02280at 473.897 kb on - strand, within IAI47_02280at 473.901 kb on + strand, within IAI47_02280at 473.902 kb on - strand, within IAI47_02280at 473.902 kb on - strand, within IAI47_02280at 473.902 kb on - strand, within IAI47_02280at 473.902 kb on - strand, within IAI47_02280at 473.933 kb on - strandat 473.940 kb on + strandat 474.018 kb on + strandat 474.018 kb on + strandat 474.018 kb on + strandat 474.018 kb on + strandat 474.019 kb on - strandat 474.019 kb on - strandat 474.019 kb on - strandat 474.036 kb on + strandat 474.054 kb on + strandat 474.055 kb on - strandat 474.055 kb on - strandat 474.055 kb on - strandat 474.055 kb on - strandat 474.055 kb on - strandat 474.060 kb on + strandat 474.061 kb on - strandat 474.061 kb on - strandat 474.061 kb on - strandat 475.069 kb on - strandat 475.069 kb on - strandat 475.069 kb on - strandat 475.069 kb on - strandat 475.069 kb on - strandat 475.069 kb on - strandat 475.604 kb on - strandat 475.633 kb on - strandat 475.714 kb on - strandat 475.721 kb on + strandat 475.721 kb on + strandat 475.721 kb on + strandat 475.722 kb on - strandat 475.722 kb on - strandat 475.722 kb on - strandat 475.722 kb on - strandat 475.722 kb on - strandat 475.722 kb on - strandat 475.722 kb on - strandat 475.797 kb on + strandat 475.797 kb on + strandat 475.797 kb on + strandat 475.804 kb on + strandat 475.805 kb on - strandat 475.805 kb on - strandat 475.805 kb on - strandat 475.830 kb on + strand, within IAI47_02295at 475.830 kb on + strand, within IAI47_02295at 475.830 kb on + strand, within IAI47_02295at 475.831 kb on - strand, within IAI47_02295at 475.853 kb on + strand, within IAI47_02295at 475.853 kb on + strand, within IAI47_02295at 475.854 kb on - strand, within IAI47_02295at 475.854 kb on - strand, within IAI47_02295at 475.854 kb on - strand, within IAI47_02295at 475.856 kb on + strand, within IAI47_02295at 475.856 kb on + strand, within IAI47_02295at 475.856 kb on + strand, within IAI47_02295at 475.857 kb on - strand, within IAI47_02295at 475.857 kb on - strand, within IAI47_02295at 475.889 kb on + strand, within IAI47_02295at 475.890 kb on - strand, within IAI47_02295at 475.890 kb on - strand, within IAI47_02295at 475.890 kb on - strand, within IAI47_02295at 475.928 kb on - strand, within IAI47_02295at 475.991 kb on + strand, within IAI47_02295at 475.991 kb on + strand, within IAI47_02295at 475.991 kb on + strand, within IAI47_02295at 475.991 kb on + strand, within IAI47_02295at 475.991 kb on + strand, within IAI47_02295at 475.992 kb on - strand, within IAI47_02295at 475.992 kb on - strand, within IAI47_02295at 475.992 kb on - strand, within IAI47_02295at 475.993 kb on + strand, within IAI47_02295at 475.993 kb on + strand, within IAI47_02295at 475.993 kb on + strand, within IAI47_02295at 475.993 kb on + strand, within IAI47_02295at 475.994 kb on - strand, within IAI47_02295at 475.994 kb on - strand, within IAI47_02295at 475.994 kb on - strand, within IAI47_02295at 476.016 kb on + strand, within IAI47_02295at 476.016 kb on + strand, within IAI47_02295at 476.016 kb on + strand, within IAI47_02295at 476.016 kb on + strand, within IAI47_02295at 476.016 kb on + strand, within IAI47_02295at 476.016 kb on + strand, within IAI47_02295at 476.016 kb on + strand, within IAI47_02295at 476.016 kb on + strand, within IAI47_02295at 476.016 kb on + strand, within IAI47_02295at 476.016 kb on + strand, within IAI47_02295at 476.017 kb on - strand, within IAI47_02295at 476.017 kb on - strand, within IAI47_02295at 476.017 kb on - strand, within IAI47_02295at 476.017 kb on - strand, within IAI47_02295at 476.017 kb on - strand, within IAI47_02295at 476.017 kb on - strand, within IAI47_02295at 476.017 kb on - strand, within IAI47_02295at 476.017 kb on - strand, within IAI47_02295at 476.017 kb on - strand, within IAI47_02295at 476.017 kb on - strand, within IAI47_02295at 476.017 kb on - strand, within IAI47_02295at 476.017 kb on - strand, within IAI47_02295at 476.017 kb on - strand, within IAI47_02295at 476.020 kb on + strand, within IAI47_02295at 476.020 kb on + strand, within IAI47_02295at 476.020 kb on + strand, within IAI47_02295at 476.020 kb on + strand, within IAI47_02295at 476.020 kb on + strand, within IAI47_02295at 476.020 kb on + strand, within IAI47_02295at 476.020 kb on + strand, within IAI47_02295at 476.021 kb on - strand, within IAI47_02295at 476.021 kb on - strand, within IAI47_02295at 476.021 kb on - strand, within IAI47_02295at 476.021 kb on - strand, within IAI47_02295at 476.031 kb on + strand, within IAI47_02295at 476.031 kb on + strand, within IAI47_02295

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
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473,163 + IAI47_02280 0.31 +1.1
473,164 - IAI47_02280 0.31 +1.3
473,227 + IAI47_02280 0.36 -2.5
473,227 + IAI47_02280 0.36 -1.0
473,227 + IAI47_02280 0.36 +0.7
473,228 - IAI47_02280 0.36 +1.1
473,228 - IAI47_02280 0.36 +0.3
473,271 + IAI47_02280 0.39 -0.2
473,272 - IAI47_02280 0.39 -1.3
473,272 - IAI47_02280 0.39 -1.0
473,272 - IAI47_02280 0.39 +1.4
473,284 - IAI47_02280 0.40 -0.3
473,284 - IAI47_02280 0.40 -0.4
473,302 + IAI47_02280 0.42 +1.5
473,302 + IAI47_02280 0.42 +0.7
473,302 + IAI47_02280 0.42 +0.3
473,302 + IAI47_02280 0.42 -0.6
473,302 + IAI47_02280 0.42 +0.3
473,302 + IAI47_02280 0.42 +0.0
473,302 + IAI47_02280 0.42 -0.7
473,303 - IAI47_02280 0.42 +0.0
473,303 - IAI47_02280 0.42 +0.3
473,303 - IAI47_02280 0.42 +0.8
473,303 - IAI47_02280 0.42 +0.3
473,303 - IAI47_02280 0.42 +0.6
473,303 - IAI47_02280 0.42 -1.1
473,303 - IAI47_02280 0.42 -1.7
473,303 - IAI47_02280 0.42 +0.8
473,401 + IAI47_02280 0.49 -0.2
473,402 - IAI47_02280 0.49 -0.4
473,402 - IAI47_02280 0.49 -0.7
473,402 - IAI47_02280 0.49 -0.0
473,612 - IAI47_02280 0.66 +0.3
473,634 - IAI47_02280 0.67 -1.4
473,696 - IAI47_02280 0.72 -0.4
473,698 + IAI47_02280 0.72 +0.1
473,698 + IAI47_02280 0.72 -1.7
473,698 + IAI47_02280 0.72 +3.0
473,698 + IAI47_02280 0.72 -1.7
473,698 + IAI47_02280 0.72 -1.1
473,698 + IAI47_02280 0.72 +0.9
473,698 + IAI47_02280 0.72 -1.3
473,698 + IAI47_02280 0.72 +0.3
473,699 - IAI47_02280 0.72 +2.3
473,699 - IAI47_02280 0.72 +2.3
473,699 - IAI47_02280 0.72 +0.2
473,699 - IAI47_02280 0.72 -0.1
473,707 + IAI47_02280 0.73 +0.1
473,707 + IAI47_02280 0.73 +0.6
473,708 - IAI47_02280 0.73 -0.4
473,708 - IAI47_02280 0.73 +0.1
473,708 - IAI47_02280 0.73 -0.3
473,708 - IAI47_02280 0.73 +0.3
473,708 - IAI47_02280 0.73 -0.9
473,708 - IAI47_02280 0.73 +4.3
473,710 + IAI47_02280 0.73 +0.3
473,710 + IAI47_02280 0.73 -1.1
473,711 - IAI47_02280 0.73 -0.3
473,711 - IAI47_02280 0.73 +1.3
473,711 - IAI47_02280 0.73 -0.9
473,790 + IAI47_02280 0.79 -1.3
473,790 + IAI47_02280 0.79 +0.0
473,790 + IAI47_02280 0.79 -0.4
473,791 - IAI47_02280 0.79 +0.5
473,791 - IAI47_02280 0.79 +0.1
473,791 - IAI47_02280 0.79 +2.3
473,791 - IAI47_02280 0.79 +0.2
473,791 - IAI47_02280 0.79 -0.5
473,791 - IAI47_02280 0.79 -0.1
473,791 - IAI47_02280 0.79 -0.4
473,793 - IAI47_02280 0.79 +1.3
473,793 - IAI47_02280 0.79 -0.2
473,793 - IAI47_02280 0.79 +1.9
473,793 - IAI47_02280 0.79 -0.3
473,805 - IAI47_02280 0.80 +0.3
473,825 + IAI47_02280 0.82 +1.3
473,825 + IAI47_02280 0.82 -0.2
473,826 - IAI47_02280 0.82 -0.3
473,826 - IAI47_02280 0.82 +0.5
473,845 - IAI47_02280 0.83 +0.9
473,872 - IAI47_02280 0.85 +2.7
473,872 - IAI47_02280 0.85 +0.3
473,896 + IAI47_02280 0.87 -0.1
473,896 + IAI47_02280 0.87 +0.9
473,897 - IAI47_02280 0.87 +1.0
473,901 + IAI47_02280 0.88 -1.7
473,902 - IAI47_02280 0.88 -0.7
473,902 - IAI47_02280 0.88 +0.0
473,902 - IAI47_02280 0.88 +0.2
473,902 - IAI47_02280 0.88 -1.0
473,933 - +0.1
473,940 + -0.0
474,018 + +0.5
474,018 + -0.7
474,018 + +0.9
474,018 + +0.3
474,019 - +0.3
474,019 - -0.3
474,019 - +0.9
474,036 + +0.3
474,054 + +1.9
474,055 - -0.7
474,055 - +0.8
474,055 - -2.0
474,055 - -0.3
474,055 - -0.2
474,060 + -0.7
474,061 - +1.2
474,061 - -0.3
474,061 - +0.7
475,069 - +0.3
475,069 - +0.3
475,069 - -1.9
475,069 - -1.4
475,069 - -1.1
475,069 - -0.2
475,604 - +0.3
475,633 - -0.2
475,714 - +0.5
475,721 + +1.4
475,721 + -0.7
475,721 + -0.2
475,722 - +1.3
475,722 - -0.3
475,722 - -0.3
475,722 - +1.0
475,722 - -0.1
475,722 - +3.5
475,722 - +1.2
475,797 + -0.0
475,797 + -0.3
475,797 + -1.3
475,804 + -0.3
475,805 - -0.1
475,805 - +1.6
475,805 - +0.6
475,830 + IAI47_02295 0.11 +0.3
475,830 + IAI47_02295 0.11 -1.5
475,830 + IAI47_02295 0.11 +0.2
475,831 - IAI47_02295 0.11 -0.9
475,853 + IAI47_02295 0.13 -0.2
475,853 + IAI47_02295 0.13 -0.7
475,854 - IAI47_02295 0.13 -0.3
475,854 - IAI47_02295 0.13 +0.1
475,854 - IAI47_02295 0.13 +0.3
475,856 + IAI47_02295 0.14 -1.0
475,856 + IAI47_02295 0.14 +1.1
475,856 + IAI47_02295 0.14 -0.0
475,857 - IAI47_02295 0.14 +2.9
475,857 - IAI47_02295 0.14 -0.0
475,889 + IAI47_02295 0.17 +0.2
475,890 - IAI47_02295 0.17 -0.0
475,890 - IAI47_02295 0.17 -0.4
475,890 - IAI47_02295 0.17 +0.1
475,928 - IAI47_02295 0.20 -1.7
475,991 + IAI47_02295 0.26 -0.0
475,991 + IAI47_02295 0.26 +0.0
475,991 + IAI47_02295 0.26 -0.6
475,991 + IAI47_02295 0.26 -0.1
475,991 + IAI47_02295 0.26 -2.0
475,992 - IAI47_02295 0.26 +1.1
475,992 - IAI47_02295 0.26 +0.3
475,992 - IAI47_02295 0.26 -1.5
475,993 + IAI47_02295 0.26 -1.0
475,993 + IAI47_02295 0.26 +0.9
475,993 + IAI47_02295 0.26 -0.3
475,993 + IAI47_02295 0.26 -2.0
475,994 - IAI47_02295 0.26 -0.4
475,994 - IAI47_02295 0.26 +0.6
475,994 - IAI47_02295 0.26 -0.9
476,016 + IAI47_02295 0.28 +0.3
476,016 + IAI47_02295 0.28 +0.3
476,016 + IAI47_02295 0.28 +0.5
476,016 + IAI47_02295 0.28 +0.7
476,016 + IAI47_02295 0.28 +1.1
476,016 + IAI47_02295 0.28 -0.4
476,016 + IAI47_02295 0.28 +0.8
476,016 + IAI47_02295 0.28 +0.3
476,016 + IAI47_02295 0.28 -0.4
476,016 + IAI47_02295 0.28 +0.3
476,017 - IAI47_02295 0.28 +0.2
476,017 - IAI47_02295 0.28 +0.3
476,017 - IAI47_02295 0.28 +1.3
476,017 - IAI47_02295 0.28 -0.7
476,017 - IAI47_02295 0.28 +0.3
476,017 - IAI47_02295 0.28 -0.8
476,017 - IAI47_02295 0.28 -0.0
476,017 - IAI47_02295 0.28 -0.7
476,017 - IAI47_02295 0.28 -0.9
476,017 - IAI47_02295 0.28 -1.7
476,017 - IAI47_02295 0.28 +0.1
476,017 - IAI47_02295 0.28 -0.1
476,017 - IAI47_02295 0.28 +2.3
476,020 + IAI47_02295 0.28 +1.3
476,020 + IAI47_02295 0.28 -0.8
476,020 + IAI47_02295 0.28 -0.7
476,020 + IAI47_02295 0.28 -0.2
476,020 + IAI47_02295 0.28 +0.3
476,020 + IAI47_02295 0.28 -0.3
476,020 + IAI47_02295 0.28 +1.3
476,021 - IAI47_02295 0.28 -0.1
476,021 - IAI47_02295 0.28 +2.1
476,021 - IAI47_02295 0.28 -0.3
476,021 - IAI47_02295 0.28 +1.1
476,031 + IAI47_02295 0.29 +1.7
476,031 + IAI47_02295 0.29 -0.7

Or see this region's nucleotide sequence