Strain Fitness in Pantoea sp. MT58 around IAI47_01040

Experiment: Ying_Others16 rep A; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_01035 and IAI47_01040 are separated by 2 nucleotidesIAI47_01040 and IAI47_01045 are separated by 0 nucleotides IAI47_01035: IAI47_01035 - dihydroxy-acid dehydratase, at 218,926 to 220,776 _01035 IAI47_01040: IAI47_01040 - threonine ammonia-lyase, biosynthetic, at 220,779 to 222,326 _01040 IAI47_01045: IAI47_01045 - HTH-type transcriptional activator IlvY, at 222,327 to 223,208 _01045 Position (kb) 220 221 222 223Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 219.813 kb on + strand, within IAI47_01035at 219.814 kb on - strand, within IAI47_01035at 219.814 kb on - strand, within IAI47_01035at 219.814 kb on - strand, within IAI47_01035at 219.814 kb on - strand, within IAI47_01035at 219.816 kb on + strand, within IAI47_01035at 219.816 kb on + strand, within IAI47_01035at 219.843 kb on + strand, within IAI47_01035at 219.843 kb on + strand, within IAI47_01035at 219.843 kb on + strand, within IAI47_01035at 219.844 kb on - strand, within IAI47_01035at 219.844 kb on - strand, within IAI47_01035at 219.844 kb on - strand, within IAI47_01035at 219.844 kb on - strand, within IAI47_01035at 219.844 kb on - strand, within IAI47_01035at 219.861 kb on + strand, within IAI47_01035at 219.877 kb on - strand, within IAI47_01035at 219.886 kb on + strand, within IAI47_01035at 219.886 kb on + strand, within IAI47_01035at 219.887 kb on - strand, within IAI47_01035at 219.887 kb on - strand, within IAI47_01035at 219.887 kb on - strand, within IAI47_01035at 219.975 kb on + strand, within IAI47_01035at 219.975 kb on + strand, within IAI47_01035at 219.975 kb on + strand, within IAI47_01035at 219.976 kb on - strand, within IAI47_01035at 219.978 kb on + strand, within IAI47_01035at 219.978 kb on + strand, within IAI47_01035at 219.978 kb on + strand, within IAI47_01035at 219.979 kb on - strand, within IAI47_01035at 219.979 kb on - strand, within IAI47_01035at 220.016 kb on - strand, within IAI47_01035at 220.016 kb on - strand, within IAI47_01035at 220.016 kb on - strand, within IAI47_01035at 220.053 kb on + strand, within IAI47_01035at 220.053 kb on + strand, within IAI47_01035at 220.053 kb on + strand, within IAI47_01035at 220.053 kb on + strand, within IAI47_01035at 220.053 kb on + strand, within IAI47_01035at 220.054 kb on - strand, within IAI47_01035at 220.054 kb on - strand, within IAI47_01035at 220.054 kb on - strand, within IAI47_01035at 220.083 kb on + strand, within IAI47_01035at 220.083 kb on + strand, within IAI47_01035at 220.083 kb on + strand, within IAI47_01035at 220.083 kb on + strand, within IAI47_01035at 220.083 kb on + strand, within IAI47_01035at 220.083 kb on + strand, within IAI47_01035at 220.083 kb on + strand, within IAI47_01035at 220.083 kb on + strand, within IAI47_01035at 220.086 kb on + strand, within IAI47_01035at 220.087 kb on - strand, within IAI47_01035at 220.087 kb on - strand, within IAI47_01035at 220.087 kb on - strand, within IAI47_01035at 220.087 kb on - strand, within IAI47_01035at 220.149 kb on + strand, within IAI47_01035at 220.150 kb on - strand, within IAI47_01035at 220.171 kb on + strand, within IAI47_01035at 220.172 kb on - strand, within IAI47_01035at 220.172 kb on - strand, within IAI47_01035at 220.227 kb on + strand, within IAI47_01035at 220.227 kb on + strand, within IAI47_01035at 220.227 kb on + strand, within IAI47_01035at 220.227 kb on + strand, within IAI47_01035at 220.227 kb on + strand, within IAI47_01035at 220.228 kb on - strand, within IAI47_01035at 220.228 kb on - strand, within IAI47_01035at 220.228 kb on - strand, within IAI47_01035at 220.228 kb on - strand, within IAI47_01035at 220.233 kb on + strand, within IAI47_01035at 220.234 kb on - strand, within IAI47_01035at 220.234 kb on - strand, within IAI47_01035at 220.234 kb on - strand, within IAI47_01035at 220.247 kb on + strand, within IAI47_01035at 220.248 kb on - strand, within IAI47_01035at 220.288 kb on + strand, within IAI47_01035at 220.288 kb on + strand, within IAI47_01035at 220.289 kb on - strand, within IAI47_01035at 220.310 kb on + strand, within IAI47_01035at 220.311 kb on - strand, within IAI47_01035at 220.405 kb on + strand, within IAI47_01035at 220.417 kb on + strand, within IAI47_01035at 220.417 kb on + strand, within IAI47_01035at 220.418 kb on - strand, within IAI47_01035at 220.560 kb on + strand, within IAI47_01035at 220.560 kb on + strand, within IAI47_01035at 220.581 kb on + strand, within IAI47_01035at 220.663 kb on + strandat 220.663 kb on + strandat 220.663 kb on + strandat 220.664 kb on - strandat 220.664 kb on - strandat 220.665 kb on + strandat 220.665 kb on + strandat 220.665 kb on + strandat 220.666 kb on - strandat 220.666 kb on - strandat 220.666 kb on - strandat 220.711 kb on + strandat 220.711 kb on + strandat 220.711 kb on + strandat 220.711 kb on + strandat 220.711 kb on + strandat 220.711 kb on + strandat 220.711 kb on + strandat 220.712 kb on - strandat 220.712 kb on - strandat 220.712 kb on - strandat 220.718 kb on + strandat 220.719 kb on - strandat 220.719 kb on - strandat 220.719 kb on - strandat 220.719 kb on - strandat 220.756 kb on - strandat 220.798 kb on + strandat 220.824 kb on + strandat 220.825 kb on - strandat 220.825 kb on - strandat 220.854 kb on + strandat 220.855 kb on - strandat 220.855 kb on - strandat 220.886 kb on + strandat 220.977 kb on + strand, within IAI47_01040at 220.978 kb on - strand, within IAI47_01040at 221.043 kb on - strand, within IAI47_01040at 221.206 kb on + strand, within IAI47_01040at 221.230 kb on - strand, within IAI47_01040at 221.550 kb on + strand, within IAI47_01040at 221.550 kb on + strand, within IAI47_01040at 221.551 kb on - strand, within IAI47_01040at 221.551 kb on - strand, within IAI47_01040at 221.551 kb on - strand, within IAI47_01040at 221.551 kb on - strand, within IAI47_01040at 221.551 kb on - strand, within IAI47_01040at 221.551 kb on - strand, within IAI47_01040at 221.551 kb on - strand, within IAI47_01040at 221.564 kb on + strand, within IAI47_01040at 221.564 kb on + strand, within IAI47_01040at 221.565 kb on - strand, within IAI47_01040at 221.565 kb on - strand, within IAI47_01040at 221.565 kb on - strand, within IAI47_01040at 221.565 kb on - strand, within IAI47_01040at 221.673 kb on + strand, within IAI47_01040at 221.673 kb on + strand, within IAI47_01040at 221.674 kb on - strand, within IAI47_01040at 221.674 kb on - strand, within IAI47_01040at 221.675 kb on + strand, within IAI47_01040at 221.676 kb on - strand, within IAI47_01040at 221.719 kb on + strand, within IAI47_01040at 221.719 kb on + strand, within IAI47_01040at 221.719 kb on + strand, within IAI47_01040at 221.720 kb on - strand, within IAI47_01040at 221.754 kb on + strand, within IAI47_01040at 221.754 kb on + strand, within IAI47_01040at 221.755 kb on - strand, within IAI47_01040at 221.883 kb on + strand, within IAI47_01040at 221.883 kb on + strand, within IAI47_01040at 221.883 kb on + strand, within IAI47_01040at 221.883 kb on + strand, within IAI47_01040at 221.883 kb on + strand, within IAI47_01040at 221.883 kb on + strand, within IAI47_01040at 221.884 kb on - strand, within IAI47_01040at 221.884 kb on - strand, within IAI47_01040at 221.884 kb on - strand, within IAI47_01040at 221.884 kb on - strand, within IAI47_01040at 221.884 kb on - strand, within IAI47_01040at 221.889 kb on + strand, within IAI47_01040at 221.944 kb on + strand, within IAI47_01040at 222.039 kb on + strand, within IAI47_01040at 222.039 kb on + strand, within IAI47_01040at 222.039 kb on + strand, within IAI47_01040at 222.039 kb on + strand, within IAI47_01040at 222.039 kb on + strand, within IAI47_01040at 222.040 kb on - strand, within IAI47_01040at 222.040 kb on - strand, within IAI47_01040at 222.040 kb on - strand, within IAI47_01040at 222.040 kb on - strand, within IAI47_01040at 222.155 kb on + strand, within IAI47_01040at 222.156 kb on - strand, within IAI47_01040at 222.156 kb on - strand, within IAI47_01040at 222.192 kb on + strandat 222.192 kb on + strandat 222.192 kb on + strandat 222.192 kb on + strandat 222.192 kb on + strandat 222.192 kb on + strandat 222.193 kb on - strandat 222.193 kb on - strandat 222.193 kb on - strandat 222.193 kb on - strandat 222.193 kb on - strandat 222.193 kb on - strandat 222.328 kb on + strandat 222.328 kb on + strandat 222.328 kb on + strandat 222.329 kb on - strandat 222.329 kb on - strandat 222.419 kb on + strand, within IAI47_01045at 222.419 kb on + strand, within IAI47_01045at 222.420 kb on - strand, within IAI47_01045at 222.420 kb on - strand, within IAI47_01045at 222.430 kb on - strand, within IAI47_01045at 222.495 kb on - strand, within IAI47_01045at 222.540 kb on + strand, within IAI47_01045at 222.540 kb on + strand, within IAI47_01045at 222.550 kb on + strand, within IAI47_01045at 222.550 kb on + strand, within IAI47_01045at 222.550 kb on + strand, within IAI47_01045at 222.551 kb on - strand, within IAI47_01045at 222.551 kb on - strand, within IAI47_01045at 222.551 kb on - strand, within IAI47_01045at 222.629 kb on + strand, within IAI47_01045at 222.629 kb on + strand, within IAI47_01045at 222.629 kb on + strand, within IAI47_01045at 222.708 kb on + strand, within IAI47_01045at 222.709 kb on - strand, within IAI47_01045at 222.734 kb on + strand, within IAI47_01045at 222.735 kb on - strand, within IAI47_01045at 222.901 kb on + strand, within IAI47_01045at 222.901 kb on + strand, within IAI47_01045at 222.901 kb on + strand, within IAI47_01045at 222.901 kb on + strand, within IAI47_01045at 222.901 kb on + strand, within IAI47_01045at 222.901 kb on + strand, within IAI47_01045at 222.901 kb on + strand, within IAI47_01045at 222.901 kb on + strand, within IAI47_01045at 222.902 kb on - strand, within IAI47_01045at 222.902 kb on - strand, within IAI47_01045at 222.902 kb on - strand, within IAI47_01045at 222.902 kb on - strand, within IAI47_01045at 222.985 kb on + strand, within IAI47_01045at 222.985 kb on + strand, within IAI47_01045at 222.986 kb on - strand, within IAI47_01045at 223.055 kb on + strand, within IAI47_01045at 223.087 kb on - strand, within IAI47_01045at 223.201 kb on - strandat 223.258 kb on + strandat 223.292 kb on + strandat 223.292 kb on + strandat 223.292 kb on + strandat 223.292 kb on + strandat 223.292 kb on + strandat 223.292 kb on + strandat 223.292 kb on + strandat 223.292 kb on + strandat 223.292 kb on + strandat 223.293 kb on - strandat 223.293 kb on - strandat 223.293 kb on - strandat 223.293 kb on - strandat 223.293 kb on - strandat 223.293 kb on - strandat 223.293 kb on - strandat 223.293 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
remove
219,813 + IAI47_01035 0.48 -4.3
219,814 - IAI47_01035 0.48 -0.6
219,814 - IAI47_01035 0.48 +0.4
219,814 - IAI47_01035 0.48 -2.9
219,814 - IAI47_01035 0.48 -3.2
219,816 + IAI47_01035 0.48 -4.3
219,816 + IAI47_01035 0.48 -3.2
219,843 + IAI47_01035 0.50 -1.6
219,843 + IAI47_01035 0.50 -5.5
219,843 + IAI47_01035 0.50 -3.8
219,844 - IAI47_01035 0.50 -0.6
219,844 - IAI47_01035 0.50 -1.9
219,844 - IAI47_01035 0.50 -3.2
219,844 - IAI47_01035 0.50 -3.2
219,844 - IAI47_01035 0.50 -3.5
219,861 + IAI47_01035 0.51 -3.1
219,877 - IAI47_01035 0.51 -4.5
219,886 + IAI47_01035 0.52 -2.9
219,886 + IAI47_01035 0.52 -3.8
219,887 - IAI47_01035 0.52 -2.9
219,887 - IAI47_01035 0.52 -3.1
219,887 - IAI47_01035 0.52 -2.2
219,975 + IAI47_01035 0.57 -2.8
219,975 + IAI47_01035 0.57 -2.2
219,975 + IAI47_01035 0.57 -0.6
219,976 - IAI47_01035 0.57 -0.6
219,978 + IAI47_01035 0.57 -3.1
219,978 + IAI47_01035 0.57 -5.0
219,978 + IAI47_01035 0.57 -1.6
219,979 - IAI47_01035 0.57 -2.4
219,979 - IAI47_01035 0.57 -1.9
220,016 - IAI47_01035 0.59 -1.9
220,016 - IAI47_01035 0.59 -2.9
220,016 - IAI47_01035 0.59 -2.2
220,053 + IAI47_01035 0.61 -1.6
220,053 + IAI47_01035 0.61 -3.1
220,053 + IAI47_01035 0.61 -4.5
220,053 + IAI47_01035 0.61 -2.4
220,053 + IAI47_01035 0.61 -2.4
220,054 - IAI47_01035 0.61 -3.2
220,054 - IAI47_01035 0.61 -2.4
220,054 - IAI47_01035 0.61 -2.9
220,083 + IAI47_01035 0.63 -2.6
220,083 + IAI47_01035 0.63 -5.4
220,083 + IAI47_01035 0.63 -2.2
220,083 + IAI47_01035 0.63 -2.8
220,083 + IAI47_01035 0.63 -2.6
220,083 + IAI47_01035 0.63 -1.2
220,083 + IAI47_01035 0.63 -2.2
220,083 + IAI47_01035 0.63 -2.4
220,086 + IAI47_01035 0.63 -2.2
220,087 - IAI47_01035 0.63 -5.0
220,087 - IAI47_01035 0.63 -2.4
220,087 - IAI47_01035 0.63 -0.6
220,087 - IAI47_01035 0.63 -2.2
220,149 + IAI47_01035 0.66 -1.9
220,150 - IAI47_01035 0.66 -2.2
220,171 + IAI47_01035 0.67 -2.8
220,172 - IAI47_01035 0.67 -3.2
220,172 - IAI47_01035 0.67 +0.4
220,227 + IAI47_01035 0.70 -4.5
220,227 + IAI47_01035 0.70 -1.2
220,227 + IAI47_01035 0.70 -1.2
220,227 + IAI47_01035 0.70 -3.6
220,227 + IAI47_01035 0.70 -0.6
220,228 - IAI47_01035 0.70 -1.2
220,228 - IAI47_01035 0.70 -1.9
220,228 - IAI47_01035 0.70 -2.8
220,228 - IAI47_01035 0.70 -0.6
220,233 + IAI47_01035 0.71 -4.5
220,234 - IAI47_01035 0.71 -3.9
220,234 - IAI47_01035 0.71 -4.6
220,234 - IAI47_01035 0.71 -1.6
220,247 + IAI47_01035 0.71 -2.6
220,248 - IAI47_01035 0.71 -4.5
220,288 + IAI47_01035 0.74 -2.6
220,288 + IAI47_01035 0.74 -1.6
220,289 - IAI47_01035 0.74 -1.6
220,310 + IAI47_01035 0.75 -1.9
220,311 - IAI47_01035 0.75 -2.8
220,405 + IAI47_01035 0.80 -3.7
220,417 + IAI47_01035 0.81 -3.4
220,417 + IAI47_01035 0.81 -1.2
220,418 - IAI47_01035 0.81 -1.2
220,560 + IAI47_01035 0.88 -2.4
220,560 + IAI47_01035 0.88 -2.8
220,581 + IAI47_01035 0.89 -2.4
220,663 + -2.4
220,663 + -1.2
220,663 + -2.4
220,664 - -1.2
220,664 - -2.4
220,665 + -4.1
220,665 + -4.3
220,665 + -2.8
220,666 - -1.2
220,666 - -2.4
220,666 - -2.8
220,711 + -1.9
220,711 + -5.3
220,711 + -2.2
220,711 + -3.1
220,711 + -2.2
220,711 + -3.3
220,711 + -4.1
220,712 - -2.2
220,712 - -2.4
220,712 - -2.8
220,718 + -2.2
220,719 - -4.5
220,719 - -3.2
220,719 - -3.3
220,719 - -1.6
220,756 - -1.9
220,798 + -3.3
220,824 + -4.7
220,825 - -2.2
220,825 - -2.8
220,854 + -4.4
220,855 - -2.9
220,855 - -1.9
220,886 + -0.6
220,977 + IAI47_01040 0.13 -3.4
220,978 - IAI47_01040 0.13 -3.9
221,043 - IAI47_01040 0.17 -1.6
221,206 + IAI47_01040 0.28 -1.6
221,230 - IAI47_01040 0.29 -2.6
221,550 + IAI47_01040 0.50 +0.4
221,550 + IAI47_01040 0.50 -0.6
221,551 - IAI47_01040 0.50 -2.4
221,551 - IAI47_01040 0.50 -1.9
221,551 - IAI47_01040 0.50 -3.1
221,551 - IAI47_01040 0.50 -1.6
221,551 - IAI47_01040 0.50 -4.1
221,551 - IAI47_01040 0.50 -4.1
221,551 - IAI47_01040 0.50 -3.1
221,564 + IAI47_01040 0.51 -2.9
221,564 + IAI47_01040 0.51 -3.5
221,565 - IAI47_01040 0.51 -2.6
221,565 - IAI47_01040 0.51 -1.6
221,565 - IAI47_01040 0.51 -1.2
221,565 - IAI47_01040 0.51 -3.4
221,673 + IAI47_01040 0.58 -2.2
221,673 + IAI47_01040 0.58 -3.8
221,674 - IAI47_01040 0.58 -0.6
221,674 - IAI47_01040 0.58 -0.6
221,675 + IAI47_01040 0.58 -4.7
221,676 - IAI47_01040 0.58 -2.8
221,719 + IAI47_01040 0.61 -4.3
221,719 + IAI47_01040 0.61 -2.9
221,719 + IAI47_01040 0.61 -2.4
221,720 - IAI47_01040 0.61 -1.2
221,754 + IAI47_01040 0.63 -3.2
221,754 + IAI47_01040 0.63 -1.2
221,755 - IAI47_01040 0.63 -4.0
221,883 + IAI47_01040 0.71 -2.4
221,883 + IAI47_01040 0.71 -2.4
221,883 + IAI47_01040 0.71 -3.2
221,883 + IAI47_01040 0.71 -3.7
221,883 + IAI47_01040 0.71 -3.2
221,883 + IAI47_01040 0.71 -1.9
221,884 - IAI47_01040 0.71 -2.9
221,884 - IAI47_01040 0.71 -2.6
221,884 - IAI47_01040 0.71 -3.2
221,884 - IAI47_01040 0.71 -0.6
221,884 - IAI47_01040 0.71 -3.2
221,889 + IAI47_01040 0.72 -3.7
221,944 + IAI47_01040 0.75 -3.2
222,039 + IAI47_01040 0.81 -1.9
222,039 + IAI47_01040 0.81 -1.9
222,039 + IAI47_01040 0.81 -2.4
222,039 + IAI47_01040 0.81 -6.2
222,039 + IAI47_01040 0.81 -3.4
222,040 - IAI47_01040 0.81 -1.6
222,040 - IAI47_01040 0.81 -1.9
222,040 - IAI47_01040 0.81 -1.9
222,040 - IAI47_01040 0.81 -3.2
222,155 + IAI47_01040 0.89 -3.2
222,156 - IAI47_01040 0.89 -2.9
222,156 - IAI47_01040 0.89 -3.6
222,192 + -2.8
222,192 + -2.2
222,192 + -2.9
222,192 + -1.6
222,192 + -3.9
222,192 + -3.7
222,193 - -2.6
222,193 - -2.4
222,193 - -2.4
222,193 - -1.2
222,193 - +0.4
222,193 - -4.0
222,328 + -1.4
222,328 + +1.0
222,328 + +0.4
222,329 - -0.6
222,329 - -0.6
222,419 + IAI47_01045 0.10 -0.9
222,419 + IAI47_01045 0.10 -0.4
222,420 - IAI47_01045 0.11 -0.9
222,420 - IAI47_01045 0.11 -1.9
222,430 - IAI47_01045 0.12 -0.6
222,495 - IAI47_01045 0.19 -0.8
222,540 + IAI47_01045 0.24 +0.6
222,540 + IAI47_01045 0.24 +1.6
222,550 + IAI47_01045 0.25 -0.0
222,550 + IAI47_01045 0.25 +0.6
222,550 + IAI47_01045 0.25 -0.9
222,551 - IAI47_01045 0.25 -0.6
222,551 - IAI47_01045 0.25 -0.6
222,551 - IAI47_01045 0.25 -0.4
222,629 + IAI47_01045 0.34 +1.2
222,629 + IAI47_01045 0.34 -0.9
222,629 + IAI47_01045 0.34 -1.0
222,708 + IAI47_01045 0.43 +0.1
222,709 - IAI47_01045 0.43 -2.7
222,734 + IAI47_01045 0.46 -2.3
222,735 - IAI47_01045 0.46 -1.3
222,901 + IAI47_01045 0.65 +0.1
222,901 + IAI47_01045 0.65 -0.4
222,901 + IAI47_01045 0.65 -0.4
222,901 + IAI47_01045 0.65 +1.4
222,901 + IAI47_01045 0.65 +1.0
222,901 + IAI47_01045 0.65 +0.6
222,901 + IAI47_01045 0.65 +0.4
222,901 + IAI47_01045 0.65 +1.0
222,902 - IAI47_01045 0.65 -2.4
222,902 - IAI47_01045 0.65 -0.9
222,902 - IAI47_01045 0.65 -1.0
222,902 - IAI47_01045 0.65 -0.8
222,985 + IAI47_01045 0.75 +1.1
222,985 + IAI47_01045 0.75 -0.3
222,986 - IAI47_01045 0.75 -1.6
223,055 + IAI47_01045 0.83 -0.4
223,087 - IAI47_01045 0.86 -1.9
223,201 - -3.0
223,258 + +0.4
223,292 + -0.0
223,292 + -0.5
223,292 + -1.8
223,292 + -0.2
223,292 + +0.4
223,292 + -1.5
223,292 + +0.4
223,292 + -1.0
223,292 + +0.4
223,293 - -2.6
223,293 - -2.4
223,293 - -1.9
223,293 - -2.2
223,293 - -2.2
223,293 - -3.4
223,293 - -2.8
223,293 - -2.2

Or see this region's nucleotide sequence