Strain Fitness in Pantoea sp. MT58 around IAI47_00290

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
62,325	-		IAI47_00290	0.10	-1.4
62,325	-		IAI47_00290	0.10	-3.0
62,423	-		IAI47_00290	0.36	-2.8
62,427	-		IAI47_00290	0.37	-1.2
62,427	-		IAI47_00290	0.37	-1.5
62,427	-		IAI47_00290	0.37	-0.0
62,427	-		IAI47_00290	0.37	-1.0
62,496	-		IAI47_00290	0.55	-0.2
62,496	-		IAI47_00290	0.55	-0.6
62,496	-		IAI47_00290	0.55	-0.6
62,573	-		IAI47_00290	0.76	-1.7
62,573	-		IAI47_00290	0.76	-1.6
62,573	-		IAI47_00290	0.76	-0.2
62,573	-		IAI47_00290	0.76	-1.0
62,579	-		IAI47_00290	0.77	-1.2
62,579	-		IAI47_00290	0.77	-0.8
62,579	-		IAI47_00290	0.77	-1.4
62,579	-		IAI47_00290	0.77	-0.9
62,601	-		IAI47_00290	0.83	-0.4
62,675	-				-1.5
62,675	-				-1.7
62,697	-				+0.0
62,697	-				+0.6
62,697	-				-1.1
62,711	-				-0.6
62,711	-				-1.4
62,713	-				-0.2
62,713	-				-0.5
62,713	-				-1.8
62,713	-				-1.4
62,761	-				-1.6
62,761	-				-0.2
62,794	+				-1.2
62,813	+				-0.0
62,813	+				-1.2
62,814	-				+1.4
62,814	-				+0.4
62,818	-				+0.4
62,853	-				+1.4
62,872	+				-0.6
62,906	+				+1.0
62,907	-				-0.2
62,918	+				-0.6
62,918	+				-0.6
62,927	+				+1.1
62,927	+				+0.4
62,930	+				+1.4
62,931	-				-1.2
62,943	+				+0.7
62,943	+				+0.6
62,943	+				+0.6
62,967	-				+1.4
62,967	-				+1.4
63,044	-				+0.7
63,044	-				+2.6
63,044	-				+1.7
63,077	+				-1.7
63,077	+				-0.4
63,077	+				+1.6
63,077	+				+1.6
63,077	+				+0.0
63,078	-				-0.8
63,078	-				+0.2
63,078	-				+1.0
63,083	+				-0.6
63,084	-				+1.6
63,084	-				+0.6
63,101	+				-1.3
63,102	-				+0.4
63,104	+				-0.6
63,105	-				-0.1
63,105	-				+0.4
63,105	-				+0.6
63,118	+				-1.0
63,118	+				-0.5
63,130	-				+0.2
63,130	-				-1.2
63,132	-				+0.8
63,132	-				-0.2
63,154	-				+2.5
63,194	-				+1.0
63,303	+				-0.6
63,303	+				+0.5
63,303	+				-1.0
63,303	+				+0.1
63,304	-				+0.5
63,304	-				-1.2
63,304	-				+0.6
63,304	-				+0.5
63,304	-				+1.0
63,304	-				-0.2
63,332	+				-1.1
63,332	+				-1.8
63,333	-				+0.7
63,333	-				+0.4
63,333	-				-1.0
63,345	+				-0.5
63,345	+				-1.0
63,346	-				+0.4
63,346	-				-0.2
63,346	-				-0.2
63,357	+				-0.4
63,358	-				+3.0
63,415	+				-1.2
63,415	+				+1.0
63,416	-				-0.6
63,416	-				+0.4
63,435	+		IAI47_00295	0.13	-2.2
63,435	+		IAI47_00295	0.13	+0.1
63,435	+		IAI47_00295	0.13	-0.0
63,436	-		IAI47_00295	0.13	+0.9
63,436	-		IAI47_00295	0.13	+1.0
63,482	-		IAI47_00295	0.20	+0.9
63,535	+		IAI47_00295	0.29	-1.8