Strain Fitness in Pantoea sp. MT58 around IAI47_20700

Experiment: Ying_Nucleobase14 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20690 and IAI47_20695 are separated by 9 nucleotidesIAI47_20695 and IAI47_20700 are separated by 9 nucleotidesIAI47_20700 and IAI47_20705 are separated by 2 nucleotidesIAI47_20705 and IAI47_20710 overlap by 17 nucleotides IAI47_20690: IAI47_20690 - ASCH domain-containing protein, at 387,452 to 387,865 _20690 IAI47_20695: IAI47_20695 - HesA/MoeB/ThiF family protein, at 387,875 to 388,843 _20695 IAI47_20700: IAI47_20700 - thiazole synthase, at 388,853 to 389,608 _20700 IAI47_20705: IAI47_20705 - sulfur carrier protein ThiS, at 389,611 to 389,808 _20705 IAI47_20710: IAI47_20710 - FAD-dependent oxidoreductase, at 389,792 to 390,736 _20710 Position (kb) 388 389 390Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 387.863 kb on + strandat 387.877 kb on - strandat 387.877 kb on - strandat 387.884 kb on - strandat 387.884 kb on - strandat 387.884 kb on - strandat 387.884 kb on - strandat 388.010 kb on + strand, within IAI47_20695at 388.010 kb on + strand, within IAI47_20695at 388.010 kb on + strand, within IAI47_20695at 388.010 kb on + strand, within IAI47_20695at 388.040 kb on - strand, within IAI47_20695at 388.073 kb on - strand, within IAI47_20695at 388.073 kb on - strand, within IAI47_20695at 388.073 kb on - strand, within IAI47_20695at 388.073 kb on - strand, within IAI47_20695at 388.073 kb on - strand, within IAI47_20695at 388.120 kb on + strand, within IAI47_20695at 388.120 kb on + strand, within IAI47_20695at 388.239 kb on - strand, within IAI47_20695at 388.239 kb on - strand, within IAI47_20695at 388.239 kb on - strand, within IAI47_20695at 388.241 kb on + strand, within IAI47_20695at 388.241 kb on + strand, within IAI47_20695at 388.241 kb on + strand, within IAI47_20695at 388.241 kb on + strand, within IAI47_20695at 388.241 kb on + strand, within IAI47_20695at 388.242 kb on - strand, within IAI47_20695at 388.242 kb on - strand, within IAI47_20695at 388.242 kb on - strand, within IAI47_20695at 388.242 kb on - strand, within IAI47_20695at 388.242 kb on - strand, within IAI47_20695at 388.242 kb on - strand, within IAI47_20695at 388.298 kb on + strand, within IAI47_20695at 388.298 kb on + strand, within IAI47_20695at 388.298 kb on + strand, within IAI47_20695at 388.319 kb on - strand, within IAI47_20695at 388.389 kb on + strand, within IAI47_20695at 388.389 kb on + strand, within IAI47_20695at 388.389 kb on + strand, within IAI47_20695at 388.389 kb on + strand, within IAI47_20695at 388.390 kb on - strand, within IAI47_20695at 388.390 kb on - strand, within IAI47_20695at 388.390 kb on - strand, within IAI47_20695at 388.396 kb on + strand, within IAI47_20695at 388.396 kb on + strand, within IAI47_20695at 388.397 kb on - strand, within IAI47_20695at 388.461 kb on + strand, within IAI47_20695at 388.462 kb on - strand, within IAI47_20695at 388.462 kb on - strand, within IAI47_20695at 388.462 kb on - strand, within IAI47_20695at 388.462 kb on - strand, within IAI47_20695at 388.462 kb on - strand, within IAI47_20695at 388.465 kb on + strand, within IAI47_20695at 388.465 kb on + strand, within IAI47_20695at 388.465 kb on + strand, within IAI47_20695at 388.465 kb on + strand, within IAI47_20695at 388.466 kb on - strand, within IAI47_20695at 388.466 kb on - strand, within IAI47_20695at 388.466 kb on - strand, within IAI47_20695at 388.466 kb on - strand, within IAI47_20695at 388.466 kb on - strand, within IAI47_20695at 388.523 kb on + strand, within IAI47_20695at 388.612 kb on + strand, within IAI47_20695at 388.687 kb on - strand, within IAI47_20695at 388.697 kb on - strand, within IAI47_20695at 388.898 kb on - strandat 388.898 kb on - strandat 388.898 kb on - strandat 388.898 kb on - strandat 389.081 kb on - strand, within IAI47_20700at 389.098 kb on + strand, within IAI47_20700at 389.099 kb on - strand, within IAI47_20700at 389.131 kb on + strand, within IAI47_20700at 389.233 kb on + strand, within IAI47_20700at 389.233 kb on + strand, within IAI47_20700at 389.235 kb on + strand, within IAI47_20700at 389.236 kb on - strand, within IAI47_20700at 389.415 kb on + strand, within IAI47_20700at 389.416 kb on + strand, within IAI47_20700at 389.416 kb on + strand, within IAI47_20700at 389.416 kb on + strand, within IAI47_20700at 389.450 kb on + strand, within IAI47_20700at 389.450 kb on + strand, within IAI47_20700at 389.450 kb on + strand, within IAI47_20700at 389.500 kb on + strand, within IAI47_20700at 389.500 kb on + strand, within IAI47_20700at 389.556 kb on + strandat 389.567 kb on - strandat 389.601 kb on + strandat 389.612 kb on + strandat 389.613 kb on - strandat 389.676 kb on - strand, within IAI47_20705at 389.793 kb on + strandat 389.794 kb on - strandat 389.881 kb on - strandat 389.940 kb on + strand, within IAI47_20710at 389.940 kb on + strand, within IAI47_20710at 389.940 kb on + strand, within IAI47_20710at 389.940 kb on + strand, within IAI47_20710at 389.940 kb on + strand, within IAI47_20710at 390.006 kb on + strand, within IAI47_20710at 390.006 kb on + strand, within IAI47_20710at 390.006 kb on + strand, within IAI47_20710at 390.007 kb on - strand, within IAI47_20710at 390.007 kb on - strand, within IAI47_20710at 390.007 kb on - strand, within IAI47_20710at 390.018 kb on - strand, within IAI47_20710at 390.018 kb on - strand, within IAI47_20710at 390.018 kb on - strand, within IAI47_20710at 390.117 kb on + strand, within IAI47_20710at 390.118 kb on - strand, within IAI47_20710at 390.118 kb on - strand, within IAI47_20710at 390.201 kb on - strand, within IAI47_20710at 390.280 kb on + strand, within IAI47_20710at 390.281 kb on + strand, within IAI47_20710at 390.281 kb on + strand, within IAI47_20710at 390.282 kb on - strand, within IAI47_20710at 390.282 kb on - strand, within IAI47_20710at 390.302 kb on + strand, within IAI47_20710at 390.302 kb on + strand, within IAI47_20710at 390.303 kb on - strand, within IAI47_20710at 390.303 kb on - strand, within IAI47_20710at 390.303 kb on - strand, within IAI47_20710at 390.303 kb on - strand, within IAI47_20710at 390.303 kb on - strand, within IAI47_20710at 390.363 kb on + strand, within IAI47_20710at 390.363 kb on + strand, within IAI47_20710at 390.364 kb on - strand, within IAI47_20710at 390.467 kb on - strand, within IAI47_20710at 390.494 kb on - strand, within IAI47_20710

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 3
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387,863 + -1.4
387,877 - -1.1
387,877 - -0.0
387,884 - +0.4
387,884 - -0.6
387,884 - -1.4
387,884 - -0.4
388,010 + IAI47_20695 0.14 -1.4
388,010 + IAI47_20695 0.14 -1.4
388,010 + IAI47_20695 0.14 -0.8
388,010 + IAI47_20695 0.14 -2.3
388,040 - IAI47_20695 0.17 +0.2
388,073 - IAI47_20695 0.20 -1.4
388,073 - IAI47_20695 0.20 -1.3
388,073 - IAI47_20695 0.20 -1.8
388,073 - IAI47_20695 0.20 -1.4
388,073 - IAI47_20695 0.20 +1.2
388,120 + IAI47_20695 0.25 +0.2
388,120 + IAI47_20695 0.25 -1.2
388,239 - IAI47_20695 0.38 -2.8
388,239 - IAI47_20695 0.38 -2.6
388,239 - IAI47_20695 0.38 -2.9
388,241 + IAI47_20695 0.38 -2.2
388,241 + IAI47_20695 0.38 -0.5
388,241 + IAI47_20695 0.38 -2.3
388,241 + IAI47_20695 0.38 -0.4
388,241 + IAI47_20695 0.38 -2.4
388,242 - IAI47_20695 0.38 -1.1
388,242 - IAI47_20695 0.38 -0.8
388,242 - IAI47_20695 0.38 -1.8
388,242 - IAI47_20695 0.38 -2.2
388,242 - IAI47_20695 0.38 +1.7
388,242 - IAI47_20695 0.38 -4.1
388,298 + IAI47_20695 0.44 -0.4
388,298 + IAI47_20695 0.44 -3.3
388,298 + IAI47_20695 0.44 -0.8
388,319 - IAI47_20695 0.46 -1.4
388,389 + IAI47_20695 0.53 -1.4
388,389 + IAI47_20695 0.53 -2.2
388,389 + IAI47_20695 0.53 -1.8
388,389 + IAI47_20695 0.53 -1.4
388,390 - IAI47_20695 0.53 -2.6
388,390 - IAI47_20695 0.53 -1.4
388,390 - IAI47_20695 0.53 -1.4
388,396 + IAI47_20695 0.54 -1.1
388,396 + IAI47_20695 0.54 -0.8
388,397 - IAI47_20695 0.54 -2.0
388,461 + IAI47_20695 0.60 -3.2
388,462 - IAI47_20695 0.61 +0.2
388,462 - IAI47_20695 0.61 -2.6
388,462 - IAI47_20695 0.61 -3.0
388,462 - IAI47_20695 0.61 -1.9
388,462 - IAI47_20695 0.61 -2.3
388,465 + IAI47_20695 0.61 -2.4
388,465 + IAI47_20695 0.61 -2.1
388,465 + IAI47_20695 0.61 -3.6
388,465 + IAI47_20695 0.61 -1.3
388,466 - IAI47_20695 0.61 -2.3
388,466 - IAI47_20695 0.61 -1.8
388,466 - IAI47_20695 0.61 -1.8
388,466 - IAI47_20695 0.61 -0.8
388,466 - IAI47_20695 0.61 -1.8
388,523 + IAI47_20695 0.67 -1.0
388,612 + IAI47_20695 0.76 -1.6
388,687 - IAI47_20695 0.84 -2.2
388,697 - IAI47_20695 0.85 -1.3
388,898 - -2.8
388,898 - -0.8
388,898 - -1.6
388,898 - -1.4
389,081 - IAI47_20700 0.30 -2.0
389,098 + IAI47_20700 0.32 -1.0
389,099 - IAI47_20700 0.33 -2.8
389,131 + IAI47_20700 0.37 -3.2
389,233 + IAI47_20700 0.50 -3.2
389,233 + IAI47_20700 0.50 -1.8
389,235 + IAI47_20700 0.51 -1.8
389,236 - IAI47_20700 0.51 -3.7
389,415 + IAI47_20700 0.74 -2.0
389,416 + IAI47_20700 0.74 -2.0
389,416 + IAI47_20700 0.74 -2.2
389,416 + IAI47_20700 0.74 -2.0
389,450 + IAI47_20700 0.79 -0.6
389,450 + IAI47_20700 0.79 -1.2
389,450 + IAI47_20700 0.79 -1.8
389,500 + IAI47_20700 0.86 +0.7
389,500 + IAI47_20700 0.86 -1.4
389,556 + -1.8
389,567 - -3.4
389,601 + -0.8
389,612 + +0.2
389,613 - -2.3
389,676 - IAI47_20705 0.33 -2.4
389,793 + -1.8
389,794 - -2.5
389,881 - -1.4
389,940 + IAI47_20710 0.16 -1.6
389,940 + IAI47_20710 0.16 -2.2
389,940 + IAI47_20710 0.16 -1.6
389,940 + IAI47_20710 0.16 -0.8
389,940 + IAI47_20710 0.16 -3.2
390,006 + IAI47_20710 0.23 -3.0
390,006 + IAI47_20710 0.23 -1.7
390,006 + IAI47_20710 0.23 -0.3
390,007 - IAI47_20710 0.23 +0.2
390,007 - IAI47_20710 0.23 -3.3
390,007 - IAI47_20710 0.23 -2.8
390,018 - IAI47_20710 0.24 -1.4
390,018 - IAI47_20710 0.24 +1.2
390,018 - IAI47_20710 0.24 -1.2
390,117 + IAI47_20710 0.34 -1.7
390,118 - IAI47_20710 0.34 -2.4
390,118 - IAI47_20710 0.34 +0.2
390,201 - IAI47_20710 0.43 -1.8
390,280 + IAI47_20710 0.52 -3.2
390,281 + IAI47_20710 0.52 -0.8
390,281 + IAI47_20710 0.52 -3.3
390,282 - IAI47_20710 0.52 -1.3
390,282 - IAI47_20710 0.52 -0.4
390,302 + IAI47_20710 0.54 -1.4
390,302 + IAI47_20710 0.54 -2.8
390,303 - IAI47_20710 0.54 -2.8
390,303 - IAI47_20710 0.54 -2.4
390,303 - IAI47_20710 0.54 -1.4
390,303 - IAI47_20710 0.54 -1.7
390,303 - IAI47_20710 0.54 -1.6
390,363 + IAI47_20710 0.60 -2.7
390,363 + IAI47_20710 0.60 -1.8
390,364 - IAI47_20710 0.61 -0.8
390,467 - IAI47_20710 0.71 +0.2
390,494 - IAI47_20710 0.74 -2.6

Or see this region's nucleotide sequence